which is the same size as a Fortran or C integer. This resulted in configure
coming up with Fortran's MAX_INT as -2^31, which obviously isn't a positive
number. Since we found the MAX_INT using the same broken loop in a couple
places and doing it right is complicated, added a new macro that is much
more careful about sign roll-over.
During the Fortran rework between v1.6 and v1.7, the variable which
indicates whether or not Fortran is being compiled changed, so on platforms
without Fortran compilers, we were trying to determine the max value for
Fortran INTEGERS where we previously didn't. I believe this is why
bug #3374 appeared as a regression.
Finally, since the OMPI code doesn't cope with OMPI_FORTRAN_HANDLE_MAX
being negative (which was the root cause of the segfault in $3374),
add a check at the end of the OMPI_FORTRAN_GET_HANDLE_MAX macro to
ensure that OMPI_FORTRAN_HANDLE_MAX is always non-negative.
This commit was SVN r27714.
config/ directory. We split them apart a while ago in the hopes that
it would simplify things, but it didn't really (e.g., because there
were still some ompi/opal .m4 files in the top-level config/
directory, resulting in developer confusion where any given m4 macro
was defined).
So this commit consolidates them back into the top-level directory for
simplicity.
There's still (at least) two changes that would be nice to make:
1. Split any generated .m4 file (e.g., autogen-generated .m4 files)
into a separate directory somewhere so that a top-level -Iconfig/
will only get our explicitly defined macros, not the autogen stuff
(e.g., with libevent2019 needing to get the visibility macro, but
NOT all the autogen-generated inclusion of component configure.m4
files).
1. Change configure to be of the form:
{{{
# ...a small amount of preamble/setup...
OPAL_SETUP
m4_ifdef([project_orte], [ORTE_SETUP])
m4_ifdef([project_ompi], [OMPI_SETUP])
# ...a small amount of finishing stuff...
}}}
I doubt we'll ever get anything as clean as that, but that would be
the goal to shoot for.
This commit was SVN r27704.
accidentally adding component names to the OMPI_MPIEXT_ALL_SUBDIRS
variable twice; once with mpiext/ and once without. And then
prefixing all of them with mpiext/ again at the end. That wasn't
really necessary :-) -- we only need to add it once (without mpiext/)
and then prefix at the end (for consistency with the
OMPI_MPI_EXT_*_SUBDIRS handling).
This commit was SVN r26981.
did so!). Previously, I forgot to include the case of not specifying
--with-verbs -- oops! So now the OPAL_CHECK_VERBS_DIR macro will:
1. $opal_want_verbs will be set to: "yes" if --with-verbs or
--with-verbs=DIR was specified "no" if --without-verbs was
specified) "optional" if neither --with-verbs* nor --without-verbs
was specified
'''NOTE:''' --with-openib* are deprecated synonyms for --with-verbs*.
1. $opal_verbs_dir and $opal_verbs_libdir with either both be set or
both be empty.
This commit was SVN r26654.
* Add new configure command line options and deprecate some old ones:
* --with-verbs replaces --with-openib
* --with-verbs-libdir replaces --with-openib-libdir
* If you specify --with-openib[-libdir] without
--with-verbs[-libdir], you'll get a "these options have been
deprecated!" warning, but then they'll act just like
--with-verbs[--libdir].
'''Sidenote:''' Note that we are not renaming any components at this
time, nor are we renaming the top-level OMPI_CHECK_OPENIB m4 macro
(which is pretty strongly tied to the openib BTL and is bastaridzed
by the ofud BTL). Note that there will likely be more changes in
this area coming soon (next week?) when some long-standing changes
move to the SVN trunk: some openib BTL infrastructure will move to
ompi/mca/common, and its configury gets split up / refactored.
We extend our philosophy of other --with-<foo> configure options of
--with-verbs to ''all'' verbs-lovin components:
* If you specify --with-verbs, then all verbs-lovin' components must
configure successfully (or abort). This currently means: OOB ud,
BTL ofud, BTL openib.
* If you specify --with-verbs=DIR, then all verbs-lovin' component
must configure successfully (or abort), and will use DIR to find
verbs headers and libraries.
* If you specify --without-verbs, then all verbs-lovin' components
will be ignored.
This commit also fixes a problem where the --with-openib=DIR form
would not use DIR for ''all'' verbs-lovin' components (I think only
BTL openib and BTL ofud used that DIR). Now all of them do, as does
hwloc (because hwloc has some !OpenFabrics helper functions that
require ibv types from verbs.h).
There's a little new m4 infrastructure worth mentioning:
* If you create a new verbs-lovin' component (i.e., a component that
need verbs), your configure.m4 should
AC_REQUIRE([OPAL_CHECK_VERBS_DIR]).
* You can then use three global shell variables: $opal_want_verbs,
$opal_verbs_dir, $opal_verbs_libdir, which will be set as follows:
* opal_want_verbs will be "yes" and opal_verbs_dir and
opal_verbs_libdir will both be set to directory values, '''OR'''
* opal_want_verbs will be "no" and opal_verbs_dir and
opal_verbs_libdir will both be set empty
This commit was SVN r26640.
problems (i.e., don't return a value from a void() function!). Thanks
to Eugene for identifying these issues. Hopefully this will fix up
the problems Oracle is having with compiling the new Fortran stuff.
This commit was SVN r26310.
the case where we have a really ancient Fortran compiler that does not
support ISO_C_BINDING, but need to test to be sure that the new
configury works.
This commit was SVN r26290.
1. New mpifort wrapper compiler: you can utilize mpif.h, use mpi, and use mpi_f08 through this one wrapper compiler
1. mpif77 and mpif90 still exist, but are sym links to mpifort and may be removed in a future release
1. The mpi module has been re-implemented and is significantly "mo' bettah"
1. The mpi_f08 module offers many, many improvements over mpif.h and the mpi module
This stuff is coming from a VERY long-lived mercurial branch (3 years!); it'll almost certainly take a few SVN commits and a bunch of testing before I get it correctly committed to the SVN trunk.
== More details ==
Craig Rasmussen and I have been working with the MPI-3 Fortran WG and Fortran J3 committees for a long, long time to make a prototype MPI-3 Fortran bindings implementation. We think we're at a stable enough state to bring this stuff back to the trunk, with the goal of including it in OMPI v1.7.
Special thanks go out to everyone who has been incredibly patient and helpful to us in this journey:
* Rolf Rabenseifner/HLRS (mastermind/genius behind the entire MPI-3 Fortran effort)
* The Fortran J3 committee
* Tobias Burnus/gfortran
* Tony !Goetz/Absoft
* Terry !Donte/Oracle
* ...and probably others whom I'm forgetting :-(
There's still opportunities for optimization in the mpi_f08 implementation, but by and large, it is as far along as it can be until Fortran compilers start implementing the new F08 dimension(..) syntax.
Note that gfortran is currently unsupported for the mpi_f08 module and the new mpi module. gfortran users will a) fall back to the same mpi module implementation that is in OMPI v1.5.x, and b) not get the new mpi_f08 module. The gfortran maintainers are actively working hard to add the necessary features to support both the new mpi_f08 module and the new mpi module implementations. This will take some time.
As mentioned above, ompi/mpi/f77 and ompi/mpi/f90 no longer exist. All the fortran bindings implementations have been collated under ompi/mpi/fortran; each implementation has its own subdirectory:
{{{
ompi/mpi/fortran/
base/ - glue code
mpif-h/ - what used to be ompi/mpi/f77
use-mpi-tkr/ - what used to be ompi/mpi/f90
use-mpi-ignore-tkr/ - new mpi module implementation
use-mpi-f08/ - new mpi_f08 module implementation
}}}
There's also a prototype 6-function-MPI implementation under use-mpi-f08-desc that emulates the new F08 dimension(..) syntax that isn't fully available in Fortran compilers yet. We did that to prove it to ourselves that it could be done once the compilers fully support it. This directory/implementation will likely eventually replace the use-mpi-f08 version.
Other things that were done:
* ompi_info grew a few new output fields to describe what level of Fortran support is included
* Existing Fortran examples in examples/ were renamed; new mpi_f08 examples were added
* The old Fortran MPI libraries were renamed:
* libmpi_f77 -> libmpi_mpifh
* libmpi_f90 -> libmpi_usempi
* The configury for Fortran was consolidated and significantly slimmed down. Note that the F77 env variable is now IGNORED for configure; you should only use FC. Example:
{{{
shell$ ./configure CC=icc CXX=icpc FC=ifort ...
}}}
All of this work was done in a Mercurial branch off the SVN trunk, and hosted at Bitbucket. This branch has got to be one of OMPI's longest-running branches. Its first commit was Tue Apr 07 23:01:46 2009 -0400 -- it's over 3 years old! :-) We think we've pulled in all relevant changes from the OMPI trunk (e.g., Fortran implementations of the new MPI-3 MPROBE stuff for mpif.h, use mpi, and use mpi_f08, and the recent Fujitsu Fortran patches).
I anticipate some instability when we bring this stuff into the trunk, simply because it touches a LOT of code in the MPI layer in the OMPI code base. We'll try our best to make it as pain-free as possible, but please bear with us when it is committed.
This commit was SVN r26283.
prototyping new MPI functionality. The C++ bindings are officially
deprecated, and are (currently) 1 vote away from being removed from
MPI-3 altogether. So let's whack the C++ stuff from mpiext.
This commit was SVN r26239.
If the profiling directory is present '/profile' then wire in the profiling stuff.
Only supports C and F77 (and kinda F90) at the moment.
This commit was SVN r26237.
OMPI supports multiple different repository systems (SVN, hg, git).
But the VERSION file has listed "want_svn" and "svn_r" as fields, even
though the actual repo system and version may not be SVN.
So search/replace those fields (and derrivative values that come from
those fields) with "want_repo_rev" and "repo_rev", respectively.
This commit was SVN r24405.
`autogen.pl` to properly handle all Sun Fortran version strings.
This commit was SVN r24080.
The following SVN revision numbers were found above:
r24076 --> open-mpi/ompi@ca0b0efada
Note: the ompi_check_libfca.m4 file had to be modified to avoid it stomping on global CPPFLAGS and the like. The file was also relocated to the ompi/config directory as it pertains solely to an ompi-layer component.
Forgive the mid-day configure change, but I know Shiqing is working the windows issues and don't want to cause him unnecessary redo work.
This commit was SVN r23966.
This merges the branch containing the revamped build system based around converting autogen from a bash script to a Perl program. Jeff has provided emails explaining the features contained in the change.
Please note that configure requirements on components HAVE CHANGED. For example. a configure.params file is no longer required in each component directory. See Jeff's emails for an explanation.
This commit was SVN r23764.
MPI_INIT and start of MPI_FINALIZE.
* Clean up MPI Extensions build system to acknowledge that OMPI's the only
project with extensions, as well as remove some build artifacts necessary
for more general components.
This commit was SVN r23616.
http://www.open-mpi.org/community/lists/devel/2010/02/7496.php
Increase the required versions of AM, AC, and LT:
* Autoconf: 2.65
* Automake: 1.11.1
* Libtool: 2.2.6b
And therefore removed a bunch of patches that we used to apply to make
older versions of these tools work.
Also updated the HACKING document to match these version numbers,
specifically mentioned Mercurial in a few places, and removed some
outdated language about running autogen.sh in subdirectories.
This commit was SVN r22896.
error if the file-based dloader (e.g., dlopen) fails to load a DSO for
a complex reason (e.g., unresolved symbol).
This has been widely reported upstream to the libltdl maintainers - a
general solution is difficult. This is very definitely an
OMPI-specific solution. Since our embedded libltdl is hidden behind
visibility flags, that's ok.
Note that this is a change to autogen.sh, but this commit does not
force re-running autogen.sh. You'll just get the new functionality
the next time you re-run autogen.sh.
This commit was SVN r22806.
continuation mark in column 6 is enough to split the lines, we do
the same continuation mark in column 73.
Now, while that would fit any msg., this would produce warnings when
including mpif-config.h with -Wall in gfortran and -warn in ifort.
Just get the SVN Version string short and forget it. Let's see
make check choke on that.
This additionally fixes the HG version string...
(Will mention this in ticket #2259)
This commit was SVN r22620.
* Fix typo in echo message
* Only traverse into orte/ and ompi/ if they exist (i.e., properly
handle --no-orte and --no-ompi tarballs). Note that this was only
a minor error -- before, they just output error messages and
(correctly) kept going. This fix just removes the error messages.
This commit was SVN r22353.
Continue the reorganization of the configure system. Move files from the main config directory to their appropriate level-specific config directories. Modify the configure system to correctly handle compiler detection, test, and setup so that all things pertaining to opal and orte are done at the lower level, with the ompi configure system only looking at mpi-specific options.
Ensure the wrapper compilers for orte and ompi only get built when appropriate. Add support for c++ to the orte wrapper compilers, both script and non-script versions.
This commit was SVN r22138.
Re-enable "./autogen.sh -no-ompi" again. If you -no-ompi, the entire OMPI
configury is skipped and the entire ompi/ subtree is not built. There's
some simple m4-isms that prune out the relevant parts.
I added ompi/config/, orte/config/, and opal/config/ directories. I moved a
bunch of m4 files from the top-level config/ dir into ompi/config/, and a few
into orte/config/.
Note that all 3 <project>/config directories have a config_files.m4 file. This
file contains the AC_CONFIG_FILES list for that project. The AC_CONFIG_FILES
call cannot be in an AC_DEFUN macro and conditionally called -- if it is
included at all, Autoconf will process it. Hence, these config_files.m4 files
don't AC_DEFUN -- they just have AC_CONFIG_FILES. m4_ifdef() is used to
conditionally include the files or not.
I moved a bunch of obvious OMPI-only m4 files from config/ to ompi/config/,
but I'm sure that there's more that could go. A ticket will be filed with
thoughts on future work in this area.
This commit was SVN r22113.
NOTE: the IPv6 support is currently marginally working and has problems when IPv6 headers are present but the interfaces are not configured to use that protocol, per several reports from users. It is unclear that anyone is willing/able to support this capability. Should that situation change, this change can be reconsidered.
This commit was SVN r22039.
* No need for OPAL_SIZEOF_BOOL and OPAL_SIZEOF_INT in comm_inln.h --
just use sizeof()
* Fix logic in ompi_setup_cxx.m4 to account for the case where we
''do'' have a C++ compiler (duh!!)
* Fix spelling error in a shell variable that ended up making a
bad/empty #define
This should bring the trunk back to being functional. Sorry for the
interruption, folks...
This commit was SVN r21758.
The following SVN revision numbers were found above:
r21755 --> open-mpi/ompi@90d6491737
C++ compiler in configure. If we have a C++ compiler, then the MPI
C++ bindings are built by default. If we don't have a C++ compiler,
then the MPI C++ bindings are not built by default.
--enable-mpi-cxx will now force an error if there is no C++ compiler
available. --disable-mpi-cxx (or the lack of a C++ compiler) will now
disable many of the C++ compiler checks in configure.
Note that there are a few items to clean up regarding the difference
between C's _Bool type and C++'s bool type. Right now, we assume that
they are the same. But they aren't, and they shouldn't be treated as
such. This cleanup will be forced in MPI-2.2 with the introduction of
the MPI_C_BOOL MPI datatype.
This commit was SVN r21755.
automatically pick up stdint.h by using AC_INCLUDES_DEFAULT. This is needed
for the types like int8_t which were added last week.
This commit was SVN r21721.
OMPI
and a language agnostic part in OPAL. The convertor is completely
moved into OPAL. This offers several benefits as described in RFC
http://www.open-mpi.org/community/lists/devel/2009/07/6387.php
namely:
- Fewer basic types (int* and float* types, boolean and wchar
- Fixing naming scheme to ompi-nomenclature.
- Usability outside of the ompi-layer.
- Due to the fixed nature of simple opal types, their information is
completely
known at compile time and therefore constified
- With fewer datatypes (22), the actual sizes of bit-field types may be
reduced
from 64 to 32 bits, allowing reorganizing the opal_datatype
structure, eliminating holes and keeping data required in convertor
(upon send/recv) in one cacheline...
This has implications to the convertor-datastructure and other parts
of the code.
- Several performance tests have been run, the netpipe latency does not
change with
this patch on Linux/x86-64 on the smoky cluster.
- Extensive tests have been done to verify correctness (no new
regressions) using:
1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and
ompi-ddt:
a. running both trunk and ompi-ddt resulted in no differences
(except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run
correctly).
b. with --enable-memchecker and running under valgrind (one buglet
when run with static found in test-suite, commited)
2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt:
all passed (except for the dynamic/ tests failed!! as trunk/MTT)
3. compilation and usage of HDF5 tests on Jaguar using PGI and
PathScale compilers.
4. compilation and usage on Scicortex.
- Please note, that for the heterogeneous case, (-m32 compiled
binaries/ompi), neither
ompi-trunk, nor ompi-ddt branch would successfully launch.
This commit was SVN r21641.
Tests based on preprocessor CPP output, won't help either, as they
don't spit out nice computed numerical values, but rather the
#define itselve.
This commit was SVN r21364.
produced object file does not contain external sumbols -- bad for the
configure tests to find out external symbols.
The only way to check for Fortran naming convention is to rid of
-ipo and -fast in case of ifort...
Thanks to Michel Devel for bringing this up.
This commit was SVN r21363.
Yes, friends, our favorite PCIE BTL has resurfaced as mgmt vacillates over its existence. This is an updated version that actually mostly works, in its final stages of debugging.
Some generalization still remains to be done...
This commit was SVN r21358.
not end up in OPAL
- Will post an updated patch for the OMPI_ALIGNMENT_ parts (within C).
This commit was SVN r21342.
The following SVN revision numbers were found above:
r21330 --> open-mpi/ompi@95596d1814
into the OPAL namespace, eliminating cases like opal/util/arch.c
testing for ompi_fortran_logical_t.
As this is processor- and compiler-related information
(e.g. does the compiler/architecture support REAL*16)
this should have been on the OPAL layer.
- Unifies f77 code using MPI_Flogical instead of opal_fortran_logical_t
- Tested locally (Linux/x86-64) with mpich and intel testsuite
but would like to get this week-ends MTT output
- PLEASE NOTE: configure-internal macro-names and
ompi_cv_ variables have not been changed, so that
external platform (not in contrib/) files still work.
This commit was SVN r21330.
well..)
- As Jeff suggested, for m4 macros, dont use _ OPAL, but
rather OPAL_ prefix
- Set the variable before AC_SUBST, so that replacement happens
in f77 header-file, too.
This commit was SVN r21316.
MPI_MAX_PROCESSOR_NAME
MPI_MAX_ERROR_STRING
MPI_MAX_OBJECT_NAME
MPI_MAX_INFO_KEY
MPI_MAX_INFO_VAL
MPI_MAX_PORT_NAME
MPI_MAX_DATAREP_STRING
Defaults stay as theyr currently are -- and now give an explanation on the
min/max values being used in a central place...
m4-macro _OPAL_WITH_OPTION_MIN_MAX_VALUE may be benefical in other parts
of the configure system.
- We need some of these in the lower level OPAL for an upcoming commit!
All other levels base their values on them.
This commit was SVN r21292.
Thereby move
--with-openib-control-hdr-padding from opal_configure_options.m4
to
--enable-openib-control-hdr-padding in ompi_check_openib.m4
This commit was SVN r21287.
has not been created yet by configure (happens only
when mpi.h and other .in-files are being created...)
Therefore mkdir -p it...
This commit was SVN r21278.
functionality (per MPI-2.1). This warning can be toggled using
--enable-mpi-interface-warning (default OFF), but can be
selectively turned on passing
mpicc -DOMPI_WANT_MPI_INTERFACE_WARNING
Using icc, gcc < 4.5, warnings (such as in mpi2basic_tests) show:
type_vector.c:83: warning: ‘MPI_Type_hvector’ is deprecated
(declared at /home/../usr/include/mpi.h:1379)
Using gcc-4.5 (gcc-svn) these show up as:
type_vector.c:83: warning: ‘MPI_Type_hvector’ is deprecated
(declared at /home/../usr/include/mpi.h:1379):
MPI_Type_hvector is superseded by MPI_Type_create_hvector in MPI-2.0
Jeff and I propose to turn such warnings on with Open MPI-1.7 by default.
- Detection of user-level compiler is handled using the preprocessor
checks of GASnet's other/portable_platform.h (thanks to Paul Hargrove
and Dan Bonachea) adapted into ompi/include/mpi_portable_platform.h
(see comments).
The OMPI-build time detection is output (Familyname and Version)
with ompi_info.
This functionality (actually any upcoming __attribute__) are turned
off, if a different compiler (and version) is being detected.
- Note, that any warnings regarding (user-compiler!=build-compiler)
as discussed in the RFC are _not_ included for now.
- Tested on Linux with --enable-mpi-interface-warning on
Linux, gcc-4.5 (deprecated w/ specific msg)
Linux, gcc-4.3 (deprecated w/o specific msg)
Linux, pathscale 3.1 (deprecated w/o specific msg)
Linux, icc-11.0 (deprecated w/o specific msg)
Linux, PGI-8.0.6 accepts __deprecated__ but does not issue a warning,
further investigation needed...
This commit was SVN r21262.
OMPI_* to OPAL_*. This allows opal layer to be used more independent
from the whole of ompi.
NOTE: 9 "svn mv" operations immediately follow this commit.
This commit was SVN r21180.
linker option when there is no visibility attribute support thus no visible
external variables. This is to get around a Sun Studio compiler version that
doesn't recognize the visibility attribute but recognizes the -xldscope option.
This commit was SVN r20902.
Add two new configure options that specify:
1. when to add padding to the openib control header - this *only* happens when the configure option is specified
2. when to use the dr-like checksum as opposed to the memcpy checksum. Not selectable at runtime - to eliminate performance impacts, this is a configure-only option
Also removed an unused checksum version from opal/util/crc.h.
The new component still needs a little cleanup and some sync with recent ob1 bug fixes. It was created as a separate module to avoid performance hits in ob1 itself, though most of the code is duplicative. The component is only selectable by either specifying it directly, or configuring with the dr-like checksum -and- setting -mca pml_csum_enable_checksum 1.
Modify the LANL platform files to take advantage of the new module.
This commit was SVN r20846.
This macro is a wrapper around OMPI_SETUP_PACKAGE, and provides common
functionality that I found myself doing in multiple components.
Someone may want to convince me that we should just wrap this all in
OMPI_SETUP_PACKAGE, but I did it first as a separate macro because so
many other places are already using OMPI_SETUP_PACKAGE and I didn't
want to update all of them.
This macro does the following:
* Assumes that this component should be built by default if all
headers and libraries can be found
* Adds --with-<name> and --with-<name>-libdir options to configure
* Sanity checks directory names given to the above options (i.e., look
for a token file in each, but only if the directory argument is
given)
* Assumes that if --with-<name> is supplied and we can't build the
component, it's a fatal error.
* Assumes that if --with-<name> is NOT supplied and we can't build the
component, it's NOT a fatal error.
* Run OMPI_CHECK_PACKAGE (check for the specific presence of header
files and/or libraries) to determine if the package is available
* Set <framework>_<component>_WRAPPER_EXTRA_LDFLAGS
* Set <framework>_<component>_WRAPPER_EXTRA_LIBS
* Set and AC_SUBST <framework>_<component>_CPPFLAGS
* Set and AC_SUBST <framework>_<component>_CFLAGS
* Set and AC_SUBST <framework>_<component>_LDFLAGS
* Set and AC_SUBST <framework>_<component>_LIBS
This commit was SVN r20746.
However, there is a bug in the config/ompi_check_pcie.m4 that I found this morning which causes those components to always attempt to build. This fixes it so the trunk will build again.
This commit was SVN r20737.
* Significantly improve the check to see if REAL*16 === the back-end
C type (i.e., not just in size, but also in representation)
* Add a check to see if Intel compiler's _Quad type === REAL*16
* Ensure that on the Sun SPARC with the Sun compilers, we get long
double === REAL*16
This commit was SVN r20513.
The following Trac tickets were found above:
Ticket 1603 --> https://svn.open-mpi.org/trac/ompi/ticket/1603
explicitly specified. This bug has escaped for a long time because
OMPI_CHECK_WITHDIR wasn't working properly until recently (r20289);
the fact that the wrong header file was specified was irrelevant
because OMPI_CHECK_WITHDIR was broken and the wrong header filename
was effectively ignored.
This commit was SVN r20301.
The following SVN revision numbers were found above:
r20289 --> open-mpi/ompi@ebaf6d5e61
versions of config.guess and config.sub right now due to some git
vulnerability. So make the script a bit more resilient to ensure that
what we get from ftp.gnu.org is actually runnable.
This commit was SVN r20300.
MCA m4 macro in configure.params (or, more likely, you copied the
configure.params file from another component and forgot to change the
m4 macro name in the file) instead of just aborting with a cryptic
message.
This commit was SVN r20181.
and components from the home directory for platforms that are bad at
reading in files from home directory at scale (like Red Storm)
This commit was SVN r20069.
If someone specifies a directory for a config option, then we should respect that designation and error out if the directory isn't found. Implemented first for the --with-openib options.
This commit was SVN r20045.
* Use the (undocumented) `solaris_use_stlport4` libtool variable to
turn off any Cstd/stlport4 linkage. This allows Open MPI to be C++
STL agnostic.
* Patch `config/libtool.m4` in autogen.sh for a bug in Libtool's
detection of the Sun Studio Fortran compiler. See the below e-mail
thread for more details:
http://www.open-mpi.org/community/lists/devel/2008/11/4920.php
This commit was SVN r20036.
* Add OMPI_F77_CHECK_REAL16_C_EQUV test whether REAL*16 is bit
equivalent to long double. AC_DEFINE OMPI_REAL16_MATCHES_C with
result (0 or 1).
* Update ompi_info to only show real16 support if
OMPI_REAL16_MATCHES_C is 1.
* Update DDT to only support REAL16 and COMPLEX32 if
1==OMPI_REAL16_MATCHES_C.
* MPI Op function pointer tabls will have NULL for the REAL16 and
COMPLEX32 entries if 0==OMPI_REAL16_MATCHES_C.
* Slightly cleaned up OMPI_F77_GET_ALIGNMENT and OMPI_F77_CHECK m4
tests (use OMPI_VAR_SCOPE_PUSH/POP).
This commit was SVN r19948.
The following Trac tickets were found above:
Ticket 1603 --> https://svn.open-mpi.org/trac/ompi/ticket/1603
<infiniband/driver.h> cannot be included because it will fail to
compile. So per advice from Roland, in that case, just put manually
include the one ibv_*() prototype that we need. Use an undocumented
feature of AC_CHECK_HEADERS to check for <infiniband/driver.h> that I
was told on the autoconf mailing list (see the comment for more
details).
This commit was SVN r19857.
svn merge -r 19823:19821 https://svn.open-mpi.org/svn/ompi/trunk ./
I copied the config directory in another location, and the original
.svn directory was replaced by the Open MPI one ... As a result my
first commit, applied the changes on the Open MPI trunk instead of
the other project.
This commit was SVN r19824.
(this was missed in #1585). Also, fix a long-standing problem that
the F90 wrapper compilers were using the F77 wrapper compiler flags.
This commit was SVN r19819.
compilers as well. Not doing this was causing problems with
MPI::ERRORS_THROW_EXCEPTIONS with gcc in 32 bit (but not 64 bit!).
* Ensure that the C and Fortran compilers actually like the C++
exceptions flags. If not, currently just abort. Let's see if
anyone complains about this -- I doubt they will because a) C++
exception support is not enabled by default, and b) I think C++
exceptions really only make sense within the same compiler family.
This commit was SVN r19783.
Commit from a long-standing Mercurial tree that ended up incorporating a lot of things:
* A few fixes for CPC interface changes in all the CPCs
* Attempts (but not yet finished) to fix shutdown problems in the IB CM CPC
* #1319: add CTS support (i.e., initiator guarantees to send first message; automatically activated for iWARP over the RDMA CM CPC)
* Some variable and function renamings to make this be generic (e.g., alloc_credit_frag became alloc_control_frag)
* CPCs no longer post receive buffers; they only post a single receive buffer for the CTS if they use CTS. Instead, the main BTL now posts the main sets of receive buffers.
* CPCs allocate a CTS buffer only if they're about to make a connection
* RDMA CM improvements:
* Use threaded mode openib fd monitoring to wait for for RDMA CM events
* Synchronize endpoint finalization and disconnection between main thread and service thread to avoid/fix some race conditions
* Converted several structs to be OBJs so that we can use reference counting to know when to invoke destructors
* Make some new OBJ's have opal_list_item_t's as their base, thereby eliminating the need for the local list_item_t type
* Renamed many variables to be internally consistent
* Centralize the decision in an inline function as to whether this process or the remote process is supposed to be the initiator
* Add oodles of OPAL_OUTPUT statements for debugging (hard-wired to output stream -1; to be activated by developers if they want/need them)
* Use rdma_create_qp() instead of ibv_create_qp()
* openib fd monitoring improvements:
* Renamed a bunch of functions and variables to be a little more obvious as to their true function
* Use pipes to communicate between main thread and service thread
* Add ability for main thread to invoke a function back on the service thread
* Ensure to set initiator_depth and responder_resources properly, but putting max_qp_rd_ataom and ma_qp_init_rd_atom in the modex (see rdma_connect(3))
* Ensure to set the source IP address in rdma_resolve() to ensure that we select the correct OpenFabrics source port
* Make new MCA param: openib_btl_connect_rdmacm_resolve_timeout
* Other improvements:
* btl_openib_device_type MCA param: can be "iw" or "ib" or "all" (or "infiniband" or "iwarp")
* Somewhat improved error handling
* Bunches of spelling fixes in comments, VERBOSE, and OUTPUT statements
* Oodles of little coding style fixes
* Changed shutdown ordering of btl; the device is now an OBJ with ref counting for destruction
* Added some more show_help error messages
* Change configury to only build IBCM / RDMACM if we have threads (because we need a progress thread)
This commit was SVN r19686.
The following Trac tickets were found above:
Ticket 1210 --> https://svn.open-mpi.org/trac/ompi/ticket/1210
(related to the presence of posix threads and ptmalloc2) is now a
little outdated: since we don't build ptmalloc2 as part of libopal
anymore, the openib BTL's requirements are not directly tied to
ptmalloc2's anymore. Specifically, I altered the test to:
1. At compile time, if no threads are found, the ptmalloc2 component
is going to be built, '''and the ptmalloc2 component is going to be
inside libopal,''' then refuse to build the openib BTL.
1. At run time, if no threads were available at compile time and the
ptmalloc2 component is part of the process, then refuse to use the
openib BTL.
Fixes trac:1537.
This commit was SVN r19652.
The following Trac tickets were found above:
Ticket 1537 --> https://svn.open-mpi.org/trac/ompi/ticket/1537
versions, dates and build names.
Fixes trac:1387
Big thanks to Jeff and Brian for help and oversight.
This commit was SVN r19120.
The following Trac tickets were found above:
Ticket 1387 --> https://svn.open-mpi.org/trac/ompi/ticket/1387
Update the ESS API so we can update the stored arch's should the modex include that info. Update ompi/proc to check/set the arch for remote procs, and add that function call to mpi_init right after the modex is done.
Setup to allow other grpcomm modules to decide whether or not to add the arch to the modex, and to detect if other entries have been made. If not, then the modex can just fall through. Begin setting up some logic in the "basic" module to handle different arch situations.
For now, default to the "bad" module so we will work in all situations, even though we may be sending around more info than we really require.
This fixes ticket #1340
This commit was SVN r18673.
Some minor changes to help facilitate debugger support so that both mpirun and yod can operate with it. Still to be completed.
This commit was SVN r18664.
is still to use the C based wrapper compilers (which have many more features
and are more well tested). The Perl compilers are enabled with the option
--enable-script-wrapper-compilers, which also ignores the option
--disable-binaries (ie --enable-script-wrapper-compilers --disable-binaries
will result in perl-based wrapper compilers being installed, but no other
binaries being installed).
This commit was SVN r18655.
Reviewed by Jeff Squyres
This change fixes trac:1316.
This commit was SVN r18548.
The following Trac tickets were found above:
Ticket 1316 --> https://svn.open-mpi.org/trac/ompi/ticket/1316
time, 27 May 2008 -- not web archived as of this commit), do the
following:
* move libtoolize earlier in the process
* remove most of acinclude.m4; instead, use "aclocal -I config" at
the top-level to have it automatically pull in any relevant .m4
file
* add patch for ifort shared library support for LT 2.2.4
(http://lists.gnu.org/archive/html/bug-libtool/2008-05/msg00049.html);
will likely be unnecessary in future LT versions
This commit was SVN r18515.
to allow explicit grouping of hot functions into similar code
sections upon link-time. Should decrease TLB misses (iff the code-
section is really too large)...
Candidates for __opal_attribute_hot__ are MPI_Isend MPI_Irecv,
MPI_Wait, MPI_Waitall
Candidates for __opal_attribute_cold__ are MPI_Init, MPI_Finalize and
MPI_Abort...
This commit was SVN r18421.
compiler warnings starting with -Wno- to recognize (if there are no
other warnings.
Try it with Your favorite warning, such as -Wno-britney will not
fail, while it will be recognized as faulty, if You also pass on with
-Wno-britney -Wspears....
This commit was SVN r18070.
Greatly reduce the number of "foo" -> "opal_foo" symbol renames in the
libevent source, and instead greatly expand the event_rename.h file
that uses preprocessor macros to make all public symbols be
"opal_foo".
This commit was SVN r17923.
Some MPI C interface files saw some spacing changes to conform to the coding standards of Open MPI.
Changed MPI C interface files to use {{{OPAL_CR_ENTER_LIBRARY()}}} and {{{OPAL_CR_EXIT_LIBRARY()}}} instead of just {{{OPAL_CR_TEST_CHECKPOINT_READY()}}}. This will allow the checkpoint/restart system more flexibility in how it is to behave.
Fixed the configure check for {{{--enable-ft-thread}}} so it has a know dependance on {{{--enable-mpi-thread}}} (and/or {{{--enable-progress-thread}}}).
Added a line for Checkpoint/Restart support to {{{ompi_info}}}.
Added some options to choose at runtime whether or not to use the checkpoint polling thread. By default, if the user asked for it to be compiled in, then it is used. But some users will want the ability to toggle its use at runtime.
There are still some places for improvement, but the feature works correctly. As always with Checkpoint/Restart, it is compiled out unless explicitly asked for at configure time. Further, if it was configured in, then it is not used unless explicitly asked for by the user at runtime.
This commit was SVN r17516.
* Include all the stuff that is necessary for running autogen.sh in a
distribution tarball.
* Remove from config/Makefile.am's EXTRA_DIST that which is
automatically included in the tarball in recent versions of
Automake (i.e., all the m4 files that are acincluded).
* Make ROMIO's configure script look for something that is actually
included in the tarball.
Fixes trac:1025.
This commit was SVN r17505.
The following Trac tickets were found above:
Ticket 1025 --> https://svn.open-mpi.org/trac/ompi/ticket/1025
for dynamic selection of cpc methods based on what is available. It
also allows for inclusion/exclusions of methods. It even futher allows
for modifying the priorities of certain cpc methods to better determine
the optimal cpc method.
This patch also contains XRC compile time disablement (per Jeff's
patch).
At a high level, the cpc selections works by walking through each cpc
and allowing it to test to see if it is permissable to run on this
mpirun. It returns a priority if it is permissable or a -1 if not. All
of the cpc names and priorities are rolled into a string. This string
is then encapsulated in a message and passed around all the ompi
processes. Once received and unpacked, the list received is compared
to a local copy of the list. The connection method is chosen by
comparing the lists passed around to all nodes via modex with the list
generated locally. Any non-negative number is a potentially valid
connection method. The method below of determining the optimal
connection method is to take the cross-section of the two lists. The
highest single value (and the other side being non-negative) is selected
as the cpc method.
svn merge -r 16948:17128 https://svn.open-mpi.org/svn/ompi/tmp-public/openib-cpc/ .
This commit was SVN r17138.
<prog>`}}} in `configure`. It is preferable to simply using {{{`which
<prog>`}}} because backticks (`) (aka backquotes) invoke a sub-shell
which may source a "noisy" `~/.whatever` file, and we do not want the
error messages to be part of the assignment in {{{foo=`which
<prog>`}}}.
This commit was SVN r16955.
cover the case where a subdirectory is also built that needs to be
removed.
Note that there are other macros that we don't control (AC, AM, and/or
LT) that also exhibit this problem that we cannot fix. :-\
Fixes trac:1180.
This commit was SVN r16669.
The following Trac tickets were found above:
Ticket 1180 --> https://svn.open-mpi.org/trac/ompi/ticket/1180
methods (in order of precedence):
1. #pragma ident <ident string> (e.g., Intel and Sun)
1. #ident <ident string> (e.g., GCC)
1. static const char ident[] = <ident string> (all others)
By default, the ident string used is the standard Open MPI version string. Only
the following libraries will get the embedded version strings (e.g., DSOs will
not):
* libmpi.so
* libmpi_cxx.so
* libmpi_f77.so
* libopen-pal.so
* libopen-rte.so
* Added two new configure options:
* `--with-package-name="STRING"` (defaults to "Open MPI username@hostname
Distribution"). `STRING` is displayed by `ompi_info` next to the "Package"
heading.
* `--with-ident-string="STRING"` (defaults to the standard Open MPI version
string - e.g., X.Y.Zr######). `%VERSION%` will expand to the Open MPI
version string if it is supplied to this configure option.
This commit was SVN r16644.
{{{
OMPI_VAR_SCOPE_PUSH([var1 var2 var3])
...use $var1 $var1 and $var3
OMPI_VAR_SCOPE_PUSH([var4 var5 var6])
...use $var1 $var1 and $var3
...use $var4 $var5 and $var6
OMPI_VAR_SCOPE_POP
...use $var1 $var1 and $var3
OMPI_VAR_SCOPE_POP
}}}
The PUSH macro does a simple sanity check to ensure that the variables
listed are not already set with other values. If they are set, it
will abort configure, assuming that this is a programming error. If
none of the names are set as environment variables containing values,
the names are saved for later POP'ing. The POP will unset all the
variables from a corresponding PUSH.
As the names imply, these macros effect a stack-like behavior. So a
POP must correspond to a PUSH, etc.
These macros are intended to be simple sanity checks for OMPI
configure programmers, and also help keep the environment clean by
unsetting variables when they are no longer used.
This commit was SVN r16592.
config/ompi_check_visibility.m4 (OMPI_CHECK_VISIBILITY):
Rename ompi_vc_cc_fvisibility to ompi_cv_cc_fvisibility, so
that it will be cached.
This commit was SVN r16435.
1. --with-sge, always builds
2. --without-sge, never builds
3. if neither is specified, build if and only if either SGE_ROOT is set or "qrsh" is found in the path
This commit was SVN r16422.
The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component.
This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done:
As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in.
In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in.
The incoming changes revamp these procedures in three ways:
1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step.
The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic.
Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure.
2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed.
The size of this data has been reduced in three ways:
(a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes.
To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose.
(b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction.
(c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using.
While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly.
3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup.
It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging.
Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future.
There are a few minor additional changes in the commit that I'll just note in passing:
* propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details.
* requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details.
* cleanup of some stale header files
This commit was SVN r16364.
static builds for OMPI components that required extra LIBS or LDFLAGS
(e.g., the openib BTL).
Fixes trac:1155.
This commit was SVN r16314.
The following SVN revision numbers were found above:
r15900 --> open-mpi/ompi@50941ec389
The following Trac tickets were found above:
Ticket 1155 --> https://svn.open-mpi.org/trac/ompi/ticket/1155
Minor change to ompi_mca.m4 to move AC_CONFIG_FILES(framework/makefile) in autogen process (instead of configure process), where we still now the actual framework path (instead of guessing using $project/mca/$framework).
This have shown no side effects in our testing. Let us know if this breaks one of your components in some exotic context.
This commit was SVN r16146.
used at nce (up to one unique collective module per collective function).
Matches r15795:15921 of the tmp/bwb-coll-select branch
This commit was SVN r15924.
The following SVN revisions from the original message are invalid or
inconsistent and therefore were not cross-referenced:
r15795
r15921
only static libraries. Previously, we were linking the libraries into
directly into the common, btl, and mtl code. This seemed to work fine
for me on my Opteron Fedora box, but caused Lisa some issues (PtlNIInit
would succeed, but the network handle would fail when used with
PtlEQAlloc).
Instead, link the portals libraries directly into libmpi and not at
all into the common, btl, or mtl components. THen use some linker
tricks to force the linker to bring in the public interface for the
reference implementation (which thankfully is pretty small).
This commit was SVN r15902.
disable the building of the udapl BTL on Linux by default. On every
other OS, the udapl configury will attempt to find udapl's
header/library files, etc. by default.
You can specify --with-udapl on the configure command line (on any OS)
to force OMPI to try to configure/build udapl (i.e., look for udapl's
header/library files, etc.).
This commit was SVN r15894.
1. Galen's fine-grain control of queue pair resources in the openib
BTL.
1. Pasha's new implementation of asychronous HCA event handling.
Pasha's new implementation doesn't take much explanation, but the new
"multifrag" stuff does.
Note that "svn merge" was not used to bring this new code from the
/tmp/ib_multifrag branch -- something Bad happened in the periodic
trunk pulls on that branch making an actual merge back to the trunk
effectively impossible (i.e., lots and lots of arbitrary conflicts and
artifical changes). :-(
== Fine-grain control of queue pair resources ==
Galen's fine-grain control of queue pair resources to the OpenIB BTL
(thanks to Gleb for fixing broken code and providing additional
functionality, Pasha for finding broken code, and Jeff for doing all
the svn work and regression testing).
Prior to this commit, the OpenIB BTL created two queue pairs: one for
eager size fragments and one for max send size fragments. When the
use of the shared receive queue (SRQ) was specified (via "-mca
btl_openib_use_srq 1"), these QPs would use a shared receive queue for
receive buffers instead of the default per-peer (PP) receive queues
and buffers. One consequence of this design is that receive buffer
utilization (the size of the data received as a percentage of the
receive buffer used for the data) was quite poor for a number of
applications.
The new design allows multiple QPs to be specified at runtime. Each
QP can be setup to use PP or SRQ receive buffers as well as giving
fine-grained control over receive buffer size, number of receive
buffers to post, when to replenish the receive queue (low water mark)
and for SRQ QPs, the number of outstanding sends can also be
specified. The following is an example of the syntax to describe QPs
to the OpenIB BTL using the new MCA parameter btl_openib_receive_queues:
{{{
-mca btl_openib_receive_queues \
"P,128,16,4;S,1024,256,128,32;S,4096,256,128,32;S,65536,256,128,32"
}}}
Each QP description is delimited by ";" (semicolon) with individual
fields of the QP description delimited by "," (comma). The above
example therefore describes 4 QPs.
The first QP is:
P,128,16,4
Meaning: per-peer receive buffer QPs are indicated by a starting field
of "P"; the first QP (shown above) is therefore a per-peer based QP.
The second field indicates the size of the receive buffer in bytes
(128 bytes). The third field indicates the number of receive buffers
to allocate to the QP (16). The fourth field indicates the low
watermark for receive buffers at which time the BTL will repost
receive buffers to the QP (4).
The second QP is:
S,1024,256,128,32
Shared receive queue based QPs are indicated by a starting field of
"S"; the second QP (shown above) is therefore a shared receive queue
based QP. The second, third and fourth fields are the same as in the
per-peer based QP. The fifth field is the number of outstanding sends
that are allowed at a given time on the QP (32). This provides a
"good enough" mechanism of flow control for some regular communication
patterns.
QPs MUST be specified in ascending receive buffer size order. This
requirement may be removed prior to 1.3 release.
This commit was SVN r15474.
VxWorks. Still some issues remaining, I'm sure.
Refs trac:1010
This commit was SVN r15320.
The following Trac tickets were found above:
Ticket 1010 --> https://svn.open-mpi.org/trac/ompi/ticket/1010
types and add STOP_AT_FIRST_PRIORITY type for framework configuration,
which allows all components at the highest priority that succeeds to
succeed
* Use STOP_AT_FIRST_PRIORITY type for gpr framework, so that the null
component isn't built when the replica and proxy components are
available.
This commit was SVN r15286.
