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Nathaniel Graham
c4d70ab425 Fix Java related warnings 
This commit fixes java related warnings.

Fixes #881

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-10-21 17:14:25 -07:00
rhc54
a3ba62dcb9 Merge pull request #1051 from lrrountr/dssunpack_objrelease 
Adding missing object release for the object created during unpack node stat.
 2015-10-21 12:06:35 -07:00
yohann
abe5002ee9 mtl/ofi: remove threading and progress hints. 2015-10-21 10:25:08 -07:00
Leobardo Ruiz Rountree
a99bd035ec Adding missing object release call for the new object created during the unpack node stat call. 2015-10-21 11:27:27 -05:00
Mike Dubman
abbb74d5ef Merge pull request #1050 from yosefe/topic/ucx-reduce-priority 
ucx: reduce components priority to 5.
 2015-10-21 18:24:58 +03:00
yosefe
cc76db8d39 ucx: reduce components priority to 5. 2015-10-21 17:38:25 +03:00
Mike Dubman
d5d8429a25 Merge pull request #1048 from miked-mellanox/topic/plat_ucx 
BUILD: update mellanox platform file
 2015-10-21 14:33:51 +03:00
Mike Dubman
cdffe4f92d BUILD: update mellanox platform file 
add support for UCX
 2015-10-21 11:39:30 +03:00
Mike Dubman
8490a96f22 Merge pull request #1041 from miked-mellanox/topic/build_platform 
BUILD: add support for --with-platform-patches-dir=DIR
 2015-10-21 11:20:40 +03:00
Gilles Gouaillardet
a0782e1c7e mpi: MPI_Neighbor_all* and MPI_Ineighbor_all* do not work with 
inter communicators (fail with MPI_ERR_COMM) or non process topologies
communicators (fail with MPI_ERR_TOPOLOGY)
 2015-10-21 16:21:19 +09:00
Mike Dubman
4ea13f10f6 Merge pull request #1008 from alex-mikheev/topic/ucx_support 
UCX support for ompi and oshmem
 2015-10-21 09:33:33 +03:00
Gilles Gouaillardet
3b0b929883 ompi: MPI_IN_PLACE is not a valid argument of MPI_Neighbor_all* and MPI_Ineighbor_all* 2015-10-21 14:46:35 +09:00
Gilles Gouaillardet
256976a108 mpi: MPI_IN_PLACE is not a valid argument of MPI_All* and MPI_Iall* with an inter communicator 2015-10-21 14:46:28 +09:00
Gilles Gouaillardet
9b31530d5c man: misc fix of revamp of MPI_File_* and MPI_Register_datarep man pages 
that fixes commit open-mpi/ompi@b17c89c1e6 :
- remove unnecessary empty lines
- add USE mpi in MPI_Register_datarep

Thanks Jeff for noticing this
 2015-10-21 09:41:01 +09:00
Nathan Hjelm
763744a32c Merge pull request #1046 from hjelmn/osc_rdma_fixes 
osc/rdma: bug fixes
 2015-10-20 16:44:38 -06:00
Nathan Hjelm
b8ee05d352 osc/rdma: bug fixes 
This commit fixes several bugs in the osc/rdma component:

 - Complete aggregated requests immediately. Completion of RMA
   requests indicates local completion anyway. This fixes a hang in
   the c_reqops test.

 - Correctly mark Rget_accumulate requests.

 - Set the local base flag correctly on the local peer.

 - Clear or set the no locks flag on the window if the value is
   changed by MPI_Win_set_info.

 - Actually update the target when using MPI_OP_REPLACE.

Fixes open-mpi/ompi#1010

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-20 15:27:15 -06:00
Ryan Grant
f60c506c68 Merge pull request #999 from tkordenbrock/topic/add.triggered.gather 
coll-portals4: add gather and igather implementations that use Portals4 triggered operations
 2015-10-20 14:59:09 -06:00
Nathan Hjelm
40845d36bc Merge pull request #1045 from hjelmn/openib_fixes 
btl/openib: fix argument type for internal atomic function
 2015-10-20 14:32:59 -06:00
Nathan Hjelm
1427a47408 Merge pull request #1044 from hjelmn/opal_keval_fix 
opal/keyval: reset buffer pointer/size in finalize
 2015-10-20 13:55:47 -06:00
Nathan Hjelm
55d24ee7a3 btl/openib: fix argument type for internal atomic function 
This was fixed on my btl 3.0 branch but the changeset got lost in a
rebase. Fixes issues with lock ups when using osc/rdma.

References open-mpi/ompi#1010

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-20 13:47:28 -06:00
Nathan Hjelm
6d3041335f opal/keyval: reset buffer pointer/size in finalize 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-20 13:10:44 -06:00
yosefe
a313588337 ompi: Add UCX PML. 2015-10-20 19:46:06 +03:00
yosefe
502dc8aaa4 add pml-specific field in OMPI datatype. 
PML UCX will use it to cache a handle for UCX datatype.
 2015-10-20 19:46:06 +03:00
Alex Mikheev
f2b501a862 oshmem: Add UCX spml. 2015-10-20 19:46:02 +03:00
Alex Mikheev
b020b628fc oshmem/memheap: optimized mkey lookup. 
Fast path lookup is done in inline funcion.
 2015-10-20 19:45:51 +03:00
yosefe
bd3f4c8cc7 spml/memheap: add support for mkey unpack. 2015-10-20 19:45:50 +03:00
Alex Mikheev
8fa14386ea spml_ikrit: fixes typo in .h file. 2015-10-20 19:36:41 +03:00
Mike Dubman
14d7fcbe2d BUILD: add support for --with-platform-patches-dir=DIR 
sync with https://github.com/open-mpi/ompi-release/pull/662
 2015-10-20 17:14:15 +03:00
Jeff Squyres
630d6bf800 Merge pull request #1038 from kawashima-fj/pr/man-correction 
man: Various manpage corrections
 2015-10-20 06:40:05 -04:00
KAWASHIMA Takahiro
7ab464fbb4 Revert "man: Remove unnecessary spaces in front of parameters." 
This reverts commit 3253a30ab2.

Because Gilles' b17c89c1 committed a few hours ago has the same change,
my RP branch had a conflict.
 2015-10-20 15:32:45 +09:00
KAWASHIMA Takahiro
373a94a3f1 man: Revert my MPI_File_iwrite_shared manpage change. 
This reverts commit 2226cdb3da
and                 d9c93c9f5d.

Because Gilles' b17c89c1 committed a few hours ago has the same change,
my RP branch had a conflict.
 2015-10-20 14:41:22 +09:00
Gilles Gouaillardet
2bd77ed4f9 mpi: fail with MPI_ERR_INTERN if MPI_IN_PLACE is used with MPI_I*alltoall* 
currently, MPI fails with MPI_ERR_ARG. This is counter intuitive since
MPI_IN_PLACE is a legitimate parameter. MPI_IN_PLACE might not be correctly
implemented by all the non blocking modules (libnbc, ...) so fail with
MPI_ERR_INTERN for the time being.
 2015-10-20 14:12:33 +09:00
Gilles Gouaillardet
b17c89c1e6 man: revamp MPI_File_* and MPI_Register_datarep man pages 
- suggest USE mpi instead of INCLUDE 'mpif.h'
- fix indentation
Thanks Jeff for pointing this issue.
 2015-10-20 13:12:12 +09:00
KAWASHIMA Takahiro
d9c93c9f5d man: Add const that is removed accidentally in 2226cdb. 2015-10-20 08:49:10 +09:00
Nathan Hjelm
9602484568 Merge pull request #1040 from hjelmn/mtl_priority 
Change how cm's priority is calculated
 2015-10-19 14:18:36 -06:00
Nathan Hjelm
53f6b57c0a pml/cm: use the priority of the mtl component 
This commit changes the priority of mtl components to be relative to
pml/ob1 and updates the mtl interface to expose this priority. cm now
sets its own priority based on the priority of the selected mtl
component.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-19 12:32:42 -06:00
Nathan Hjelm
8b5810f7f7 mca/base: add priority output to mca_base_select 
The mca_base_select function uses returned priorities to select the
best component/module. This priority may be of use to the caller so
pass that information back in an optional argument. If the priority is
not needed pass NULL.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-19 12:32:41 -06:00
Nathan Hjelm
bedd80214e pml/ob1: remove priority check 
This commit removes code that checks the ob1 priority vs the previous
priority. The previous priority is meaningless here and may only cause
ob1 to disable itself when it shouldn't.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-19 12:32:41 -06:00
Nathan Hjelm
2fd176ac7f cm: fix selection priority 
This patch removes a priority check that disables cm if the previous
pml had higher priority. The check was incorrect as coded and is
unnecessary as we finalize all but one pml anyway.

Fixes open-mpi/ompi#1035

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-19 12:32:26 -06:00
igor-ivanov
71ec545e2e Merge pull request #1037 from rhc54/topic/singleton 
Fix singleton operations when running under a SLURM allocation.
 2015-10-19 13:58:21 +03:00
Gilles Gouaillardet
0f23037775 coll/base: fix memory allocation in mca_coll_base_alltoall_intra_basic_inplace 2015-10-19 16:47:59 +09:00
KAWASHIMA Takahiro
7fef70c9b8 man: Add MPI_DIST_GRAPH in MPI_TOPO_TEST manpage. 
`MPI_DIST_GRAPH` was added in MPI-2.2.
 2015-10-19 15:24:12 +09:00
KAWASHIMA Takahiro
d3a29e364c man: Change 'MPI ADDRESS KIND' to 'MPI_ADDRESS_KIND'. 
(underscores instead of spaces)
 2015-10-19 15:11:06 +09:00
KAWASHIMA Takahiro
dcd14103d5 man: Remove unnecessary spaces in Fortran syntax. 
Similar lines of other routines have no space.
 2015-10-19 15:04:50 +09:00
KAWASHIMA Takahiro
34c3b5d74d man: Correct the kind of ADDRESS parameter of MPI_GET_ADDRESS. 2015-10-19 15:01:30 +09:00
KAWASHIMA Takahiro
3253a30ab2 man: Remove unnecessary spaces in front of parameters. 2015-10-19 14:48:23 +09:00
KAWASHIMA Takahiro
2226cdb3da man: Correct the routine name of MPI_FILE_IWRITE_SHARED. 2015-10-19 14:44:49 +09:00
KAWASHIMA Takahiro
bffc7b6c8f man: Add man of MPI_Message_{c2f,f2c} and MPI_Op_commutative. 
These routines were added in MPI-2.2 but were missing in OMPI man pages.
 2015-10-19 13:49:40 +09:00
KAWASHIMA Takahiro
9942d5a933 man: MPI_IBARRIER has two output parameters. 2015-10-19 13:46:03 +09:00
KAWASHIMA Takahiro
953c95e9bb man: Update description of MPI_IN_PLACE of MPI_Exscan. 
MPI-2.2 added MPI_IN_PLACE support for MPI_Exscan.
 2015-10-19 13:46:03 +09:00