Gilles Gouaillardet
3e469662ad
trim man pages if no c++/f08/fortran
2015-10-13 10:21:42 +09:00
Ralph Castain
64bea51cdf
Update ignores for new oshmem man pages
2015-10-12 17:30:12 -07:00
Gilles Gouaillardet
66c30b2721
Add Fortran 2008 syntax to the manpages
2015-10-13 09:21:45 +09:00
Gilles Gouaillardet
291a464efb
configury: remove the --enable-mpi-profiling option
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and directly call the PMPI_* symbols from C and Fortran bindings
2015-10-13 08:52:35 +09:00
Gilles Gouaillardet
40b57ff347
fortran: only generate the correct symbol based on the compiler mangling.
2015-10-13 08:52:03 +09:00
Gilles Gouaillardet
53b952dc2b
oshmem: invoke the C PMPI_* subroutines instead of the MPI_* ones
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when profiling is built.
This prevents oshmem subroutines from being wrapped twice by third
party tools (e.g. once in oshmem and once in MPI)
see discussion starting at http://www.open-mpi.org/community/lists/devel/2015/08/17842.php
Thanks to Bert Wesarg for bringing this to our attention
2015-10-13 08:52:03 +09:00
Gilles Gouaillardet
16d65a2762
fortran/mpif-h: invoke the C PMPI_* subroutines instead of the MPI_* ones
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when profiling is built.
This prevents Fortran subroutines from being wrapped twice by third
party tools (e.g. once in Fortran and once in C)
see discussion starting at http://www.open-mpi.org/community/lists/devel/2015/08/17842.php
2015-10-13 08:52:02 +09:00
Jeff Squyres
1dfb685f8d
libevent: headers are not in $includedir
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They are in $opalincludedir. Use the neutral "$pkgincludedir", which
will get translated under the covers to opalincludedir.
2015-10-12 15:20:59 -07:00
Jeff Squyres
e8b4a4c800
wrappers: add support for opallibdir, opalincludedir
2015-10-12 15:18:31 -07:00
Jeff Squyres
eeddb7abc1
ompi_setup_mpi_fortran.m4: add more verbosity
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Add a little more to the verbose messages from d7e6daf
2015-10-12 10:26:08 -07:00
Jeff Squyres
fcb7fc6b56
Merge pull request #990 from ggouaillardet/topic/f08_vs_pmpi
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configury: do not build usempif08 is PMPI is not built
2015-10-12 13:24:22 -04:00
rhc54
db467d1c8f
Merge pull request #969 from annu13/master
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sync with PMIX master
2015-10-09 16:04:20 -07:00
annu13
cc5e1e26a5
sync with pmix master (repo_rev git69c398e)
2015-10-09 15:17:43 -07:00
Nathan Hjelm
d8dc5292ed
Merge pull request #1002 from hjelmn/ompi_coverity
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ompi: fix coverity issues
2015-10-09 12:27:41 -06:00
Jeff Squyres
f9e9b69d93
Merge pull request #1001 from igor-ivanov/master
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orte/mca/rmaps: Improve orte_rmaps_dist_device help message
2015-10-09 14:07:47 -04:00
bosilca
1310acc83f
Merge pull request #912 from bosilca/topic/coll_requests
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This patch fixes the issues identified by @ggouaillardet in the IBM tests (collectives and topologies). It also improves the memory usage of OMPI, as a communicator without collective communications will never allocate the array of requests needed to coordinate the basic collective algorithms. This ticket replaced #790 .
2015-10-09 11:27:07 -04:00
Igor Ivanov
489f27f8e9
orte/mca/rmaps: Improve orte_rmaps_dist_device help message
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See: https://github.com/open-mpi/ompi/issues/953
2015-10-09 17:58:07 +03:00
Nathan Hjelm
4cb42f8264
ompi: fix coverity issues
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Fixes CID 715741: Logically dead code
Verified. Removed dead code.
Fixes CID 1320878: Resource leak
Free proc_list before returning.
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-10-09 08:41:27 -06:00
Ryan Grant
e019203499
Merge pull request #1000 from tkordenbrock/topic/init.osc.datatypes
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osc-portals4: Initialize datatype in MPI_Get_accumulate and MPI_Rget_accumulate
2015-10-09 08:05:18 -06:00
Todd Kordenbrock
141b20d991
osc-portals4: Initialize datatype in MPI_Get_accumulate and MPI_Rget_accumulate
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Fix code paths that didn't convert the MPI datatype to the
corresponding Portals4 datatype.
Thanks to Nicolas Chevalier (@shawone) for finding this bug and
submitting a patch.
2015-10-08 12:17:19 -05:00
Jeff Squyres
76dab8002d
NEWS: Got @dmt4's real name: Dimitar Pashov
2015-10-08 09:45:56 -07:00
Jeff Squyres
7946d3d80f
NEWS: sync one more 1.10.1 bullet
2015-10-08 09:26:43 -07:00
Gilles Gouaillardet
e946c82847
Revert "coll/basic: fix segmentation fault in neighborhood collectives if the degree"
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This partially reverts commit open-mpi/ompi@76204dfafe .
2015-10-08 12:00:41 -04:00
Gilles Gouaillardet
99cca2cfd3
Revert "* comment on communicator creation in mca_topo_base_dist_graph_create(...)"
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This partially reverts commit open-mpi/ompi@27e4389259 .
2015-10-08 12:00:41 -04:00
George Bosilca
a8bdd8f668
Don't lose the pointer to the request array. Patch provided by
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@ggouaillardet.
2015-10-08 12:00:41 -04:00
George Bosilca
88492a1e12
Consistently use the request array for all modules (single array stored
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in the base).
Correctly deal with persistent requests (they must be always freed when
they are stored in the request array associated with the communicator).
Always use MPI_STATUS_IGNORE for single request waiting functions.
2015-10-08 12:00:41 -04:00
George Bosilca
01b32caf98
Update the basic module to dynamically allocate the right
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number of requests.
Remove unnecessary fields.We don't need these fields.
2015-10-08 12:00:41 -04:00
George Bosilca
a324602174
Never allocate a temporary array for the requests. Instead rely on the
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module_data to hold one with the largest necessary size. This array is
only allocated when needed, and it is released upon communicator
destruction.
2015-10-08 12:00:41 -04:00
Jeff Squyres
8cc39f7192
NEWS: sync with v1.10.1 bullets
2015-10-08 07:44:09 -07:00
Ryan Grant
8134ba76f1
Merge pull request #998 from tkordenbrock/topic/fix.incorrect.ompi_proc.cast
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Looks good to me.
mtl-portals4: fix bug in the Portals4 get_peer family
2015-10-08 08:38:16 -06:00
Ryan Grant
4addab8e16
Merge pull request #997 from tkordenbrock/topic/fix.debug.msg
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coll-portals4: allreduce: remove extra %d from error message.
2015-10-08 08:36:30 -06:00
Nathan Hjelm
90db00e37f
Merge pull request #996 from hjelmn/openib_progress_thread
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btl/openib: remove extra threads
2015-10-08 07:31:27 -06:00
Todd Kordenbrock
88d79efd9f
mtl-portals4: fix bug in the Portals4 get_peer family
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The Portals4 get_peer family incorrectly cast the ompi_proc_t to
ptl_process_t and returned that as the peer. The ptl_process_t is
actually found in the endpoint array. This commit fixes the
Portals4 get_peer family to return the dereferenced endpoint
pointer.
2015-10-08 07:57:48 -05:00
Todd Kordenbrock
f33b0c1cdf
coll-portals4: allreduce: remove extra %d from error message.
2015-10-08 07:57:33 -05:00
Jeff Squyres
1929bb02ff
Merge pull request #993 from miked-mellanox/topic/platform_patches_arg
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BUILD: add --with-platform-patches-dir=DIR
2015-10-08 07:00:55 -05:00
rhc54
232f97a80c
Merge pull request #968 from JohnWestlund/master
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simplify use of sockaddr* structs to work around buffer overflow warning
2015-10-07 17:42:19 -07:00
Gilles Gouaillardet
d7e6daf75f
configury: do not build usempif08 is PMPI is not built
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this is a revamp of commit open-mpi/ompi@2d1a8fa920
Thanks Jeff for the review !
2015-10-08 09:04:07 +09:00
Rolf vandeVaart
fffb05be0b
Merge pull request #994 from rolfv/pr/add-volatile-where-needed
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Add volatile to workaround GCC optimization bug in 4.9.2 and greater.
2015-10-07 19:15:22 -04:00
Nathan Hjelm
b8af310efa
btl/openib: remove extra threads
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This commit removes the service and async event threads from the
openib btl. Both threads are replaced by opal progress thread
support. The run_in_main function is now supported by allocating an
event and adding it to the sync event base. This ensures that the
requested function is called as part of opal_progress.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-07 12:30:41 -06:00
Rolf vandeVaart
952d01db70
Add volatile to workaround GCC optimization bug in 4.9.2 and greater. Thanks to oere for fix
2015-10-07 12:56:58 -04:00
Mike Dubman
a120fe4a14
BUILD: add --with-platform-patches-dir=DIR flag to configure
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allow to override default patch dir to arbitrary.
2015-10-07 16:18:48 +03:00
Mike Dubman
c391df7536
Merge pull request #992 from miked-mellanox/topic/platform_patches_arg
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BUILD - patch_dir can be specified in configure
2015-10-07 13:19:31 +03:00
Mike Dubman
eb883ae98f
BUILD: allow specifying platform patch_dir from cmd line
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before:
patch_dir=$PLATFORM.patches
after
patch_dir can be specified as ./configure <....> patch_dir=/usr/local/site_ompi_v_x.y_patches/
if not specified - use default
2015-10-07 09:31:49 +03:00
Mike Dubman
75c7e89c61
Merge pull request #991 from bureddy/master
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HCOLL: Enable alltoall interface
2015-10-07 09:01:02 +03:00
Devendar Bureddy
72f98ccf6c
HCOLL: Enable alltoall interface
2015-10-07 08:00:04 +03:00
Howard Pritchard
7c935a2206
Merge pull request #983 from hppritcha/topic/alps_odls_fix
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odls/alps: close the directory
2015-10-06 14:12:07 -06:00
Howard Pritchard
d899320574
odls/alps: close the directory
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Close the /proc/self/fd dir after checking for open fds.
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-10-06 11:13:44 -07:00
Nathan Hjelm
c124fd4a0b
Merge pull request #977 from hjelmn/ompi_win_free
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win: free windows in ompi_win_finalize
2015-10-06 10:11:28 -06:00
Nathan Hjelm
d7205f90f1
win: free windows in ompi_win_finalize
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This commit frees any outstanding windows at ompi_win_finalize. If
ompi_debug_show_handle_leaks is set a warning message is printed out
indicating that a window is still allocated.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-06 09:25:51 -06:00
Nathan Hjelm
81757d411a
Merge pull request #955 from hjelmn/mpool_update
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opal/mpool: add support for passing access flags to register
2015-10-06 08:42:56 -06:00
