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Граф коммитов

1494 Коммитов

Автор SHA1 Сообщение Дата
Iain Bason
7445b23e0d Fixed a minor typo.
This commit was SVN r22706.
2010-02-24 19:05:19 +00:00
Jeff Squyres
af6f1f4b00 Add pkg-config(1) config files to Open MPI. Additionally, fix a minor
bug: libmpi_f90 had libmpi.la in its LIBADD instead of libmpi_f77.la.

Fixes trac:2244.

This commit was SVN r22704.

The following Trac tickets were found above:
  Ticket 2244 --> https://svn.open-mpi.org/trac/ompi/ticket/2244
2010-02-24 18:46:06 +00:00
Jeff Squyres
d9b6b5af0c This commit converts us to the "one big libmpi" scheme that has been
discussed extensively.  See
https://svn.open-mpi.org/trac/ompi/ticket/2092 and the RFC thread
http://www.open-mpi.org/community/lists/devel/2010/02/7447.php.

Specifically:

 * Create LT convenience libraries for OPAL and ORTE if the layer
   above them is being created (use the already-defined
   AM_CONDITIONALs to know if the project above us is being built).
 * ORTE slurps in the LT convenience library for OPAL; OMPI slurps in
   the LT convenience library for ORTE.
 * Wrapper compilers now only -l one library (e.g., ortecc only does
   -lopen-ret, and mpicc only does -lmpi).

This commit was SVN r22691.
2010-02-23 22:20:01 +00:00
Terry Dontje
cfe37fb5a1 Fixed issue with detecting root dir and used appropriate defines for solaris detection
This commit was SVN r22686.
2010-02-23 15:58:49 +00:00
Christopher Yeoh
bccafbb5df Fixes the problem where the rcache and core memory allocation can deadlock itself
This commit fixes trac:2104. Request a cmr:v1.4

This commit was SVN r22675.

The following Trac tickets were found above:
  Ticket 2104 --> https://svn.open-mpi.org/trac/ompi/ticket/2104
2010-02-22 05:12:10 +00:00
George Bosilca
3356c2e241 Don't forget to update the return value for PPC32 and PPC64.
This commit was SVN r22665.
2010-02-18 19:16:41 +00:00
George Bosilca
ab202d0f69 Add the memory and the cc to the clobber list for the cas atomics.
This commit was SVN r22664.
2010-02-18 19:15:50 +00:00
Rainer Keller
a46cecf4f2 - Use strrchr instead of loop for '/' as Nysal suggests.
This commit was SVN r22649.
2010-02-17 23:40:08 +00:00
Jeff Squyres
17f0885f12 Add proper BSD interface detection code. Fixes a long-standing
discussion on the users list (see
http://www.open-mpi.org/community/lists/users/2009/12/11526.php). 

Many thanks to Kevin Buckley who did most of the coding work, and to
Aleksej Saushev for his extreme patience in waiting for me to review
and commit this stuff.

This commit was SVN r22640.
2010-02-17 19:43:57 +00:00
Terry Dontje
2a4b1227d9 corrected an array access bug in the latest libevent merge (see #2234) that was causing Solaris binaries to loop infinitely.
This commit was SVN r22638.
2010-02-17 14:50:37 +00:00
Shiqing Fan
3a3018deef Convert the line endings for the added header files. They were changed automatically by Windows when adding new files.
This commit was SVN r22634.
2010-02-16 17:24:44 +00:00
Shiqing Fan
08ffdbe987 Changes for portable platform headers. Commit it on behalf of Ralph.
This commit was SVN r22619.
2010-02-15 22:14:59 +00:00
Shiqing Fan
0b765637d9 A type cast.
This commit was SVN r22618.
2010-02-15 10:26:02 +00:00
Ralph Castain
7a1b2a706e Add a new ring_buffer class
This commit was SVN r22615.
2010-02-14 19:20:19 +00:00
Nysal Jan
0538b1a948 Adding GPFS to the list of file systems checked
This commit was SVN r22612.
2010-02-12 14:15:39 +00:00
Rainer Keller
ea4de16561 - Check whether file is opened on network file-system.
If file does not exist, check the directory it lives in...
   Maybe used by caller, trying to open mmap() on NFS, Lustre or
   Panasas (thanks Sam).
   For now, this is used to warn about the usage of mmap on such FS.

   Please note, that Ralph mentioned the orte_no_session_dir parameter.
   The help message includes a reference to this.

   Tested on NFS and Lustre on Linux on
     smoky: mpirun --mca orte_tmpdir_base $HOME/tmp -np 2 ./mpi_stub
     jaguar: mpirun ... --mca orte_tmpdir_base /tmp/work/$USER ...

   Fixes trac:1354

   This should   cmr:v1.5   once it has soaked and is shown to work on
   Solaris

This commit was SVN r22604.

The following Trac tickets were found above:
  Ticket 1354 --> https://svn.open-mpi.org/trac/ompi/ticket/1354
2010-02-10 23:18:29 +00:00
Jeff Squyres
a89dc623b0 Brice Goglin noticed that mpi_paffinity_alone didn't seem to be doing
anything for non-MPI apps.  Oops!  (But before you freak out, gentle
reader, note that mpi_paffinity_alone for MPI apps still worked fine)
When we made the switchover somewhere in the 1.3 series to have the
orted's do processor binding, then stuff like:

  mpirun --mca mpi_paffinity_alone 1 hostname

should have bound hostname to processor 0.  But it didn't because of a
subtle startup ordering issue: the MCA param registration for
opal_paffinity_alone was in the paffinity base (vs. being in
opal/runtime/opal_params.c), but it didn't actually get registered
until after the global variable opal_paffinity_alone was checked to
see if we wanted old-style affinity bindings.  Oops.

However, for MPI apps, even though the orted didn't do the binding,
ompi_mpi_init() would notice that opal_paffinity_alone was set, yet
the process didn't seem to be bound.  So the MPI process would bind
itself (this was done to support the running-without-orteds
scenarios).  Hence, MPI apps still obeyed mpi_paffinity_alone
semantics.

But note that the error described above caused the new mpirun switch
--report-bindings to not work with mpi_paffinity_alone=1, meaning that
the orted would not report the bindings when mpi_paffinity_alone was
set to 1 (it ''did'' correctly report bindings if you used
--bind-to-core or one of the other binding options).

This commit separates out the paffinity base MCA param registration
into a small function that can be called at the Right place during the
startup sequence.

This commit was SVN r22602.
2010-02-10 22:32:00 +00:00
Rainer Keller
80136ac9e2 - We don't configure-check for errno.h and don't need errno.h here...
This commit was SVN r22587.
2010-02-09 01:12:52 +00:00
Jeff Squyres
3c8685ea8c Add a check for strtoll for libevent.
Not having this check was causing distcheck errors on the OMPI
tarball-build machine because it's still a 32-bit-default machine, so
the evutil.c code was failing some #if conditionals (since it didn't
think it had strtoll available).

This commit was SVN r22577.
2010-02-08 20:55:21 +00:00
Jeff Squyres
cd5012d481 Fix "make dist: opal/event/WIN32-Code/misc.* don't exist anymore.
This commit was SVN r22562.
2010-02-05 13:42:45 +00:00
Shiqing Fan
23bb52ad05 Remove a few files from the CMakeList, that no long exist in the new libevent.
Add #ifdef for including _libevent_time.h.
Use the Windows version of function random().

This commit was SVN r22556.
2010-02-04 15:18:54 +00:00
Brian Barrett
b5e391251f Update libevent to 1.4.13
This commit was SVN r22548.
2010-02-04 05:38:30 +00:00
Ralph Castain
db1b07c02c In multiple places in the code base, we expect opal_bitmap_is_set_bit to return either true or false...not a negative error code. If the index is out of range, this is effectively a "false" condition as the bit was clearly not set by the program.
This revision is consistent with how the function was called in the OMPI code base. Will fix the test to match.

This commit was SVN r22544.
2010-02-03 19:45:22 +00:00
Shiqing Fan
7ad3d310b8 Define SIGPIPE for Windows, just for fixing the v1.4 Windows build.
cmr:v1.4.2:reviewer=jsquyres

This commit was SVN r22543.
2010-02-03 18:49:22 +00:00
Rainer Keller
0009d10c4d - This fixes the failing mpic++/mpiCC MTT tests, bailing due to not
finding symbol pthread_atfork, e.g. cxx-test-suite.

   Fixes trac:2088

   cmr:v1.5:reviewer=jsquyres

This commit was SVN r22542.

The following Trac tickets were found above:
  Ticket 2088 --> https://svn.open-mpi.org/trac/ompi/ticket/2088
2010-02-03 18:47:13 +00:00
Brian Barrett
8b4825ff37 Updates to make trunk run on Catamount again:
* Don't build the pstat component if all defines needed aren't there.
 * Update platform file to work better
 * Work around two places that depended on modex being operational

This commit was SVN r22536.
2010-02-03 05:07:40 +00:00
Jeff Squyres
007a6c7b99 Per #2201, move the user arguments up to be the first set of argv
after the compiler argv tokens.  

Not closing #2201 yet; there's still discussion on that ticket about
whether we want to do more or not.

Refs trac:2201
cmr:v1.4.2 
cmr:v1.5

This commit was SVN r22513.

The following Trac tickets were found above:
  Ticket 2201 --> https://svn.open-mpi.org/trac/ompi/ticket/2201
2010-01-29 22:51:35 +00:00
Jeff Squyres
93e930ae13 Fix minor typo
This commit was SVN r22497.
2010-01-26 23:21:00 +00:00
Josh Hursey
b749ecbab8 This commit fixes trac:2190.
Originally the patch was to improve the error message, but when digging into the code I found a subtle bug. If the daemon does not tell the HNP what CRS component it used, then the HNP tries to figure it out from the metadata (this is an uncommon case). The path the HNP used was not complete, so it was unable to find the metadata information. This patch fixes this by adding the 'snapshot_reference' to the 'snapshot_location' which completes the path for this search.

cmr:v1.4 (needs a custom patch)

cmr:v1.5

This commit was SVN r22479.

The following Trac tickets were found above:
  Ticket 2190 --> https://svn.open-mpi.org/trac/ompi/ticket/2190
2010-01-25 20:28:38 +00:00
Ralph Castain
2e2e49e46f Define a standard return value for when a thread exits.
Not sure what Windows or Solaris are looking for, so defined it all the same

This commit was SVN r22471.
2010-01-23 03:57:24 +00:00
Shiqing Fan
c29a668e37 Remove flex.exe and its license file from the tarball.
cmr:v1.4
cmr:v1.5

This commit was SVN r22469.
2010-01-22 16:40:13 +00:00
Shiqing Fan
4836e8878a Update a few more CMake scripts.
This commit was SVN r22454.
2010-01-19 17:34:55 +00:00
Jeff Squyres
596473e7ca Patch from Aleksej Saushev to properly only check for /proc/cpuinfo on Linux-based systems
This commit was SVN r22417.
2010-01-14 23:16:31 +00:00
Shiqing Fan
ad763c327d Restore several linked libraries that were deleted by mistake in r22405.
This commit was SVN r22415.

The following SVN revision numbers were found above:
  r22405 --> open-mpi/ompi@872a4047ba
2010-01-14 21:50:42 +00:00
Shiqing Fan
872a4047ba Fix the bug that caused by ADD_DEPENDENCIES() from different version of CMake.
In CMake 2.6 and earlier, this function add dependencies for targets and also link the target libraries automatically, but in CMake 2.8,this behavior has been changed, i.e. it will only add the dependencies but no link, which will cause linking errors at compilation time.

This commit was SVN r22405.
2010-01-14 18:10:20 +00:00
Ralph Castain
f0646b3603 Need separate flag for select when initializing sysinfo framework
This commit was SVN r22394.
2010-01-12 23:22:46 +00:00
Ralph Castain
b35486d945 The CM ess module needs to open the sysinfo framework and select modules prior to when others need it. Thus, setup a flag to avoid multiple open/select within that framework.
This commit was SVN r22393.
2010-01-12 22:03:49 +00:00
Jeff Squyres
d9fc4e0a9d Per http://www.open-mpi.org/community/lists/devel/2010/01/7283.php, allow MCA components to fail the component.register and component.open methods without the MCA base printing errors.
This commit was SVN r22391.
2010-01-12 19:29:12 +00:00
Brian Barrett
86d8356b13 Updates to allow OMPI to build on Cray XT platforms running Catamount
This commit was SVN r22381.
2010-01-07 18:14:03 +00:00
Jeff Squyres
dbb29663e8 Update the embedded PLPA version to v1.3.2. Since this is a 3rd
party/"vendor" import, the changes are actually far smaller than the
size of this changeset implies.  Here's a list of the changes:

 * Update the AMD license header in plpa_map.c to be less restrictive
   (see https://svn.open-mpi.org/trac/plpa/changeset/262 for details)
   -- '''this is the most/only important change of this update.'''  No
   code is changed by this; only removing a clase from a license
   header in plpa_map.c.
 * Changes to the generated {{{configure}}}, {{{config.guess}}}, and
   {{{config.sub}}} scripts (which aren't used by OMPI).
 * soname version tracking changes (which also aren't used by OMPI;
   they're only used when PLPA is built/installed in "standalone"
   mode).
 * Update the "get version" m4 (which was stolen from OMPI's m4 to
   begin with, and is only used during OMPI's autogen.sh step).
 * Update various PLPA version numbers to 1.3.2.
 * Bug fix in plpa-taskset (which is not built in the OMPI PLPA build).

This commit was SVN r22367.
2010-01-06 00:44:14 +00:00
Ralph Castain
fad1ba15b0 Move the test for case-sensitive file system from ompi to opal so that all layers can have that knowledge.
Use that for the orte wrapper compilers

This commit was SVN r22348.
2009-12-29 23:26:45 +00:00
Josh Hursey
313acba4ce Move the mca_base_is_component_required() functionality to mca/base per suggestion so that it can be reused in other components.
This commit was SVN r22327.
2009-12-17 15:12:26 +00:00
George Bosilca
7ba371cd92 Correct the atomics on x86 and x86_64. Thanks to Iain for the catch,
to Eugene, Jeff, and Briand for the help. This patch is supposed to
fix several outstanding issues, notably the one on tickets #2043.

This commit was SVN r22324.
2009-12-16 22:34:56 +00:00
George Bosilca
9fa5f1d7a8 Spaces instead of tabs.
This commit was SVN r22314.
2009-12-15 18:07:33 +00:00
Josh Hursey
6e584c151f We need to check the value of {{{opal_crs_base_metadata_read_token}}} since it may segv if we have a malformed metadata file.
Bug found by Sergio Diaz Montes:
  http://www.open-mpi.org/community/lists/users/2009/11/11176.php

This commit was SVN r22290.
2009-12-09 18:41:56 +00:00
Josh Hursey
e8de64d5a0 Make sure that we release the components that do not qualify for selection. These components are never open'ed really so we never need to close them.
This will need to be applied to v1.4 and v1.5, CMRs to follow.

This commit was SVN r22288.
2009-12-09 15:45:53 +00:00
Rainer Keller
787538ae38 Correct the spelling, and try cmr:v1.5 This should succeed
This commit was SVN r22280.
2009-12-08 18:46:46 +00:00
Ralph Castain
70e385bcab Picky, picky, picky...the a-retentive amongst us wants the default value to show in ompi_info! Of all the nerve...
:-)

Okay, cleanup the prior commit so that the default component search path shows in ompi_info, and remains available in component_find.

This commit was SVN r22278.
2009-12-08 17:32:22 +00:00
George Bosilca
e55f89dda7 Add a format to stop the complaining.
This commit was SVN r22276.
2009-12-08 17:26:42 +00:00
Ralph Castain
703ec3d6ce Some minor cleanups to the handling of multi-path component find
This commit was SVN r22275.
2009-12-08 09:34:49 +00:00
Ralph Castain
0b654ba4dc Extend the mca_component_path param usage by allowing a user to add paths to the default system and user ones defined in the program. Thus, the user can specify a param value of:
"my_perfect_path":SYSTEM_DEFAULT:USER_DEFAULT

and OPAL will substitute its internally derived values for the defaults (instead of forcing the user to figure them out).

This commit was SVN r22272.
2009-12-07 20:29:28 +00:00
Jeff Squyres
16b100219d A patch from UTK to allow orte_init(), opal_init(), and associated
friends also receive &argc and &argv (George asked Jeff to Ralph to
review before committing).  The thought is that passing argv and argc
to opal/orte_init be useful to other projects outside of OMPI that are
using OPAL and/or ORTE (especially in conjunction with some other
bootstrapping code where it is helpful to modify argv).  It's such a
small thing that it's easy to apply here to make others' lives a
little easier.

Ask George for more details; I'm just the messenger.  :-)

Judging by the copyrights on this patch, it's been around for a
while.  :-)

This commit was SVN r22260.
2009-12-04 00:51:15 +00:00
Ralph Castain
a0d5c80ce0 Add a new framework for discovering local resource information such as cpu type/model, #cpus, available physical memory, etc. Two initial components (darwin and linux) are provided. This is needed to support bootstrap operations where daemons are started at node boot, and applications where initial knowledge of cpu identification is needed to guide framework component selection.
Add orte configuration option to control the use of the framework in the system. Although the code will build, it will not be active unless configured with --enable-bootstrap.

If bootstrap is enabled and the new opal_sysinfo framework can successfully determine the cpu model, pass that info to the application as an MCA param to support some work at Sun.

Also, have daemons report back the resources they find to guide process mapping in bootstrap operations (i.e., where the daemon starts at node boot as opposed to being launched at application start).

Adjust some platform files to enable these capabilities.

This commit was SVN r22244.
2009-11-30 23:11:25 +00:00
Jeff Squyres
978fb43a26 Add a Big Hairy Warning if you --enable-progress-threads
This commit was SVN r22230.
2009-11-24 23:20:37 +00:00
Shiqing Fan
6f8d0a1ab8 Update a few CMake scripts.
Add Program Database (pdb) files for installation for debug build.

This commit was SVN r22188.
2009-11-03 10:40:58 +00:00
Jeff Squyres
5e6c494269 Remove the mistaken line (confirmed by Shiqing).
This commit was SVN r22175.
2009-10-30 12:45:05 +00:00
Jeff Squyres
16f42c45a6 Ensure to have a PARAM_CONFIG_FILES (I don't know if
PARAM_WINDOWS_FILES is a mistake or not).  Fixes trac:2079.

This commit was SVN r22171.

The following Trac tickets were found above:
  Ticket 2079 --> https://svn.open-mpi.org/trac/ompi/ticket/2079
2009-10-29 22:05:26 +00:00
Shiqing Fan
48dd7ff7d0 Get rid of the shadow file for mpi.h.in on Windows.
This commit was SVN r22154.
2009-10-28 15:49:01 +00:00
Rainer Keller
4ce710a147 - The internal function may fail make_opt (e.g. OPAL_ERR_OUT_OF_RESOURCE),
pass that on to callers of opal_cmd_line_make_opt_mca().
   Thanks to Thomas Naughton III.

 - Additionally, cmd-line parameters passed in table to opal_cmd_line_create()
   may be wrong (e.g. OPAL_ERR_BAD_PARAM), which may be missed in the
   loop.

This commit was SVN r22153.
2009-10-28 15:14:31 +00:00
Terry Dontje
c6ebc7c341 rename macros ompi_check_optflags and ompi_make_stripped_flags based on comments in #2072
This commit was SVN r22151.
2009-10-28 10:51:59 +00:00
Shiqing Fan
63cdfc0ab1 Get rid of several shadow files for windows build, use the same input file as on Linux.
This commit was SVN r22145.
2009-10-27 18:22:14 +00:00
Terry Dontje
6df802424d remove duplicate setting of CFLAGS_WITHOUT_OPTFLAGS and special case DEBUGGER_FLAGS for intel compiler
This commit was SVN r22143.
2009-10-26 18:41:53 +00:00
Shiqing Fan
af0830107c Generate the compiler wrappers more nicely on Windows.
This commit was SVN r22142.
2009-10-26 13:26:06 +00:00
Ralph Castain
13d86e100b Courtesy of Ralph and Jeff:
Continue the reorganization of the configure system. Move files from the main config directory to their appropriate level-specific config directories. Modify the configure system to correctly handle compiler detection, test, and setup so that all things pertaining to opal and orte are done at the lower level, with the ompi configure system only looking at mpi-specific options.

Ensure the wrapper compilers for orte and ompi only get built when appropriate. Add support for c++ to the orte wrapper compilers, both script and non-script versions.

This commit was SVN r22138.
2009-10-24 01:04:35 +00:00
Ralph Castain
214e26b539 Per Jeff (this work was done on a branch of mine, so I will do the commit):
Re-enable "./autogen.sh -no-ompi" again. If you -no-ompi, the entire OMPI
configury is skipped and the entire ompi/ subtree is not built. There's
some simple m4-isms that prune out the relevant parts.

I added ompi/config/, orte/config/, and opal/config/ directories. I moved a
bunch of m4 files from the top-level config/ dir into ompi/config/, and a few
into orte/config/.

Note that all 3 <project>/config directories have a config_files.m4 file. This
file contains the AC_CONFIG_FILES list for that project. The AC_CONFIG_FILES
call cannot be in an AC_DEFUN macro and conditionally called -- if it is
included at all, Autoconf will process it. Hence, these config_files.m4 files
don't AC_DEFUN -- they just have AC_CONFIG_FILES. m4_ifdef() is used to
conditionally include the files or not.

I moved a bunch of obvious OMPI-only m4 files from config/ to ompi/config/,
but I'm sure that there's more that could go. A ticket will be filed with
thoughts on future work in this area.

This commit was SVN r22113.
2009-10-20 23:44:20 +00:00
Ralph Castain
c991d155f4 Fix a minor omission in opal/util/path. If someone provides a relative path to the current working directory, without starting it with a
'.', we should still find the executable - it is in a directory beneath us.

In other words, if someone gives us "foo/bar" instead of "./foo/bar", we should still be able to find bar

This commit was SVN r22110.
2009-10-20 04:05:16 +00:00
Ralph Castain
c58a30ea10 Add two new functions:
1. check for loopback interface

2. convert tuple addresses to ip addrs + mask

This commit was SVN r22080.
2009-10-09 15:24:41 +00:00
Jeff Squyres
9afe50d886 Update Cisco copyrights for consistency
This commit was SVN r22072.
2009-10-07 22:02:32 +00:00
Jeff Squyres
d317ce0367 Fix CID 1381: don't bother checking for (NULL == p); it's overkill.
posix_memalign() will either return 0 or not, indicating success.  And
if posix_memalign() fails, it's not always going to be due to
out-of-memory -- just return ERR_IN_ERRNO.

This commit was SVN r22070.
2009-10-07 20:01:50 +00:00
Jeff Squyres
7900451e4e Fix CID 1326: for the (unlikely) case where
opal_paffinity_base_get_processor_info() returns failure.

This commit was SVN r22069.
2009-10-07 19:52:08 +00:00
Jeff Squyres
5c1af9c2ba Fix CID 1355: ensure that mca_base_param_reg_int() actually
succeeded.

This commit was SVN r22068.
2009-10-07 19:43:35 +00:00
Jeff Squyres
3b4f695009 MAP_FAILED is more POSIX-ly correct than ((void*)-1).
This commit was SVN r22063.
2009-10-07 14:20:18 +00:00
Jeff Squyres
d7db5f4c32 mmap(2) says that you must call mmap() with either MAP_SHARED or
MAP_PRIVATE.  We didn't catch this because we checked for a NULL
return, not a -1 return.  Doh!  Thanks again to Julian Seward for
continuing to track this down.

This commit was SVN r22062.
2009-10-07 12:39:01 +00:00
Jeff Squyres
977574bd45 Fix a problem noted by Julian Seward: MAKE_MEM_UNDEFINED is not the
opposite of MAKE_MEM_DEFINED. Also add in a call to NOACCESS to
(mostly) reverse the effects of MAKE_MEM_DEFINED (technically, page 0
was accessible before this, even though it's a Bad Idea to access it).

This commit was SVN r22056.
2009-10-06 17:55:49 +00:00
Jeff Squyres
932b43be04 Check to ensure that the mmap succeeded. Thanks to Julia Seward for
pointing out the problem and suggesting the fix.

This commit was SVN r22055.
2009-10-06 17:44:14 +00:00
George Bosilca
01bb4dafe0 Add a comment.
This commit was SVN r22052.
2009-10-05 17:36:11 +00:00
Jeff Squyres
0f8ac9223f Refs trac:2023, #2027.
This commit does a bunch of things:

 * Address all remaining code review items from CMR #2023:

   * Defer mmap setup to be lazy; only set it up the first time we
     invoke a collective.  In this way, we don't penalize apps that
     make lots of communicators but don't invoke collectives on them
     (per #2027).
   * Remove the extra assignments of mca_coll_sm_one (fixing a
     convertor count setup that was the real problem).
   * Remove another extra/unnecessary assignment.
   * Increase libevent polling frequency when using the RML to
     bootstrap mmap'ed memory.
   * Fix a minor procs-related memory leak in btl_sm.
 * Commit a datatype fix that George and I discovered along the way to
   fixing the coll sm.
 * Improve error messages when mmap fails, potentially trying to
   de-alloc any allocated memory when that happens.
 * Fix a previously-unnoticed confusion between extent and true_extent
   in coll sm reduce.

This commit was SVN r22049.

The following Trac tickets were found above:
  Ticket 2023 --> https://svn.open-mpi.org/trac/ompi/ticket/2023
2009-10-02 17:13:56 +00:00
Jeff Squyres
c8c3132605 Also check for posix_memalign.
This commit was SVN r22045.
2009-10-01 23:51:48 +00:00
George Bosilca
b04a42ba3b Add the format to the opal_output call.
This commit was SVN r22041.
2009-09-30 23:33:12 +00:00
Ralph Castain
84a45fea0a Add a convenience macro for assembling network addresses
This commit was SVN r22036.
2009-09-30 14:38:52 +00:00
Ralph Castain
176fdd3a83 Add a new API to the show_help system that allows external users (e.g., libraries built upon OMPI) to define their own locations for show_help files. This allows such users to exploit the rather nice features of the OPAL show_help system -without- interfering with the ability of the ORTE and OMPI layers to use show_help themselves.
Reviewed by Jeff to protect toes...and to get some good comments :-)

This commit was SVN r22026.
2009-09-29 02:07:46 +00:00
Jeff Squyres
1886d5a004 Remove the libopenmpi_malloc library; it is only necessary for
backwards compatibility in the v1.3 series.

This commit was SVN r22013.
2009-09-25 17:09:54 +00:00
Josh Hursey
5406fdfb80 Add support for sending SIGSTOP the MPI job after the checkpoint is taken (uses a BLCR feature for the option).
This commit looks larger than it really is since it includes a fair amount of code cleanup.

The SIGSTOP/SIGCONT+checkpointing work uses some of the functionality in r20391. Basic use case below (note that the checkpoint generated is useable as usual if the stopped application is terminated).
{{{
shell 1) mpirun -np 2 -am ft-enable-cr my-app
... running ...

shell 2) ompi-checkpoint --stop -v MPIRUN_PID
[localhost:001300] [  0.00 /   0.20]                 Requested - ...
[localhost:001300] [  0.00 /   0.20]                   Pending - ...
[localhost:001300] [  0.01 /   0.21]                   Running - ...
[localhost:001300] [  1.01 /   1.22]                   Stopped - ompi_global_snapshot_1234.ckpt
Snapshot Ref.: 0 ompi_global_snapshot_1234.ckpt

shell 2) killall -CONT mpirun

... Application Continues execution in shell 1 ...
}}}

Other items in this commit are mostly cleanup that has been sitting off-trunk for too long:
 * Add a new {{{opal_crs_base_ckpt_options_t}}} type that encapsulates the various options that could be passed to the CRS. Currently only TERM and STOP, but this makes adding others ''much'' easier.
 * Eliminate ORTE_SNAPC_CKPT_STATE_PENDING_TERM, since it served a redundant purpose with the new options type.
 * Lay some basic ground work for some future features.

This commit was SVN r21995.

The following SVN revision numbers were found above:
  r20391 --> open-mpi/ompi@0704b98668
2009-09-22 18:26:12 +00:00
Eugene Loh
67bac2fe31 Fix paffinity_linux_module.c. The set and get functions transferred cpu
masks between the mask argument and a local PLPA mask.  There were three
problems:
1) The "get" function computed the number of bits as sizeof(mask),
   which is the size of the pointer to the mask rather than the mask
   itself.  So, only 4 bits were copied with m32 and 8 bits with m64.
   There are actually 1024 bits.
2) The "get" and "set" functions both copied a number of bits computed
   from the sizeof() mask, but sizeof() reports the number of bytes.
   We have to multiply by 8 to get the number of bits.
3) These two functions check to make sure tha the mask argument is not
   bigger than the PLPA mask.  But, the set function copies a number
   of bits in the PLPA mask, which is conceivably greater than the
   number of bits in the mask argument.  So, accesses to the mask
   argument may overrun that argument.
Problems 1 and 2 meant that one would encounter errors when the number of
cores exceeded 4 (with -m32) or 8 (with -m64).  Problem 3 probably caused
no errors.

This commit was SVN r21993.
2009-09-22 16:00:37 +00:00
Ralph Castain
7765c71428 Add a macro for formatting IP addresses for printing
This commit was SVN r21985.
2009-09-22 00:53:54 +00:00
George Bosilca
b18ca686ae Correct the pointer math when we copy the opal_datatype_t object. In addition
don't set the ref count to 1, it has been already set by the call to OBJ_NEW
when the type was allocated. This fixes ticket #2014.

This commit was SVN r21976.
2009-09-18 20:05:22 +00:00
Ralph Castain
2028017554 Modify the paffinity system to handle binding directives that are "soft" - i.e., when someone directs that we bind if the system supports it. This allows community members to distribute OMPI with default MCA param files that direct general binding policies, without having the distributed software fail if the system cannot support those policies.
The new options work by adding an ":if-avail" qualifier to the "bind-to-socket" and "bind-to-core" MCA params. If the system does not support this capability, the job will launch anyway. Without the qualifier, the job will abort with an error message indicating that the required functionality is not supported on this system.

This commit was SVN r21975.
2009-09-18 19:48:42 +00:00
Rainer Keller
5983aeb753 - This fixes trac:2014:
As noted in http://www.open-mpi.org/community/lists/devel/2009/08/6741.php,
   we do not correctly free a dupped predefined datatype.
   The fix is a bit more involving. See ticket for details.
   Tested with ibm tests and mpi_test_suite (though there's two "old" failures
   zero5.c and zero6.c)

   Thanks to Lisandro Dalcin for bringing this up.

This commit was SVN r21929.

The following Trac tickets were found above:
  Ticket 2014 --> https://svn.open-mpi.org/trac/ompi/ticket/2014
2009-09-02 17:34:01 +00:00
Jeff Squyres
2fa048b0e0 Make the paffinity test component only build when you --enable-debug
(or have a developer build where that's enabled for you by default).

This commit was SVN r21928.
2009-09-02 11:23:54 +00:00
Ralph Castain
388c65fd80 Add missing include file
This commit was SVN r21924.
2009-09-01 13:31:54 +00:00
Ralph Castain
888f3c3afe Extend the paffinity test module to allow users to specify the number of sockets and cores - provides an extended ability to mimic archs.
This commit was SVN r21912.
2009-08-29 03:35:39 +00:00
Ralph Castain
3c4f28b22c Modify the paffinity test module to take a param indicating whether or not to mimic being externally bound
This commit was SVN r21908.
2009-08-28 02:31:01 +00:00
Shiqing Fan
4119497c5a Use select() for Windows events by default.
For some historical reasons, we didn't use select() for the Windows events. Now it could be merged back to have a better performance on Windows.

This commit was SVN r21899.
2009-08-27 08:11:56 +00:00
Shiqing Fan
1b6db85988 Complete the support for building on UNC path.
This commit was SVN r21897.
2009-08-27 07:57:26 +00:00
Ralph Castain
7cc045f9c5 Check return codes when init'ing the paffinity framework to avoid segfaulting
This commit was SVN r21884.
2009-08-26 01:58:15 +00:00
Ralph Castain
2178f995b9 Add a new "test" module to the paffinity framework that mimics a system that supports affinity when running on a Mac for development purposes. Only active if specifically called out.
This commit was SVN r21881.
2009-08-26 01:55:30 +00:00
Josh Hursey
1fc454103a MTT found a linking problem with the previous fix (r21860). This commit cleans up the configure.m4 a bit so that is works as expected. Tested with static and shared builds, but MTT should have a pass at it before it moved to v1.3 (I'll attach a custom patch to ticket #2004 for v1.3).
Additionally this commit fixes trac:1658
Refs trac:2004

This commit was SVN r21866.

The following SVN revision numbers were found above:
  r21860 --> open-mpi/ompi@7f31473bd7

The following Trac tickets were found above:
  Ticket 1658 --> https://svn.open-mpi.org/trac/ompi/ticket/1658
  Ticket 2004 --> https://svn.open-mpi.org/trac/ompi/ticket/2004
2009-08-21 20:07:18 +00:00
Josh Hursey
7f31473bd7 Fix the CFLAGS argument to the BLCR component.
Due to a typo (probably cut/paste error) the CFLAGS/CPPFLAGS/LDFLAGS/LIBS arguments were not propogated to the BLCR component.

This changes a few {{{crs_blcr_check_}}} to {{{crs_blcr_save}}}, which they should have been all along.

This needs to be applied to v1.3 as well :/

This commit was SVN r21860.
2009-08-20 21:28:19 +00:00
Rainer Keller
8e1b23779f - Replace combinations of
#if defined (c_plusplus)
          defined (__cplusplus)
   followed by
      extern "C" {
   and the closing counterpart by BEGIN_C_DECLS and END_C_DECLS.

   Notable exceptions are:
    - opal/include/opal_config_bottom.h:
      This is our generated code, that itself defines BEGIN_C_DECL and
      END_C_DECL
    - ompi/mpi/cxx/mpicxx.h:
      Here we do not include opal_config_bottom.h:                                 
    - Belongs to external code:                                                    
      opal/mca/backtrace/darwin/MoreBacktrace/MoreDebugging/MoreBacktrace.c        
      opal/mca/backtrace/darwin/MoreBacktrace/MoreDebugging/MoreBacktrace.h        
    - opal/include/opal/prefetch.h:
      Has C++ specific macros that are protected:                                  

    - Had #if ... } #endif  _and_ END_C_DECLS (aka end up with 2x
      END_C_DECLS)
      ompi/mca/btl/openib/btl_openib.h
    - opal/event/event.h has #ifdef __cplusplus as BEGIN_C_DECLS...
    - opal/win32/ompi_process.h: had extern "C"\n {...
      opal/win32/ompi_process.h: dito
    - ompi/mca/btl/pcie/btl_pcie_lex.l: needed to add *_C_DECLS
      ompi/mpi/f90/test/align_c.c: dito
    - ompi/debuggers/msgq_interface.h: used #ifdef __cplusplus
    - ompi/mpi/f90/xml/common-C.xsl: Amend

   Tested on linux using --with-openib and --with-mx

   The following do not contain either opal_config.h, orte_config.h or
   ompi_config.h
   (but possibly other header files, that include one of the above):
      ompi/mca/bml/r2/bml_r2_ft.h
      ompi/mca/btl/gm/btl_gm_endpoint.h
      ompi/mca/btl/gm/btl_gm_proc.h
      ompi/mca/btl/mx/btl_mx_endpoint.h
      ompi/mca/btl/ofud/btl_ofud_endpoint.h
      ompi/mca/btl/ofud/btl_ofud_frag.h
      ompi/mca/btl/ofud/btl_ofud_proc.h
      ompi/mca/btl/openib/btl_openib_mca.h
      ompi/mca/btl/portals/btl_portals_endpoint.h
      ompi/mca/btl/portals/btl_portals_frag.h
      ompi/mca/btl/sctp/btl_sctp_endpoint.h
      ompi/mca/btl/sctp/btl_sctp_proc.h
      ompi/mca/btl/tcp/btl_tcp_endpoint.h
      ompi/mca/btl/tcp/btl_tcp_ft.h
      ompi/mca/btl/tcp/btl_tcp_proc.h
      ompi/mca/btl/template/btl_template_endpoint.h
      ompi/mca/btl/template/btl_template_proc.h
      ompi/mca/btl/udapl/btl_udapl_eager_rdma.h
      ompi/mca/btl/udapl/btl_udapl_endpoint.h
      ompi/mca/btl/udapl/btl_udapl_mca.h
      ompi/mca/btl/udapl/btl_udapl_proc.h
      ompi/mca/mtl/mx/mtl_mx_endpoint.h
      ompi/mca/mtl/mx/mtl_mx.h
      ompi/mca/mtl/psm/mtl_psm_endpoint.h
      ompi/mca/mtl/psm/mtl_psm.h
      ompi/mca/pml/cm/pml_cm_component.h
      ompi/mca/pml/csum/pml_csum_comm.h
      ompi/mca/pml/dr/pml_dr_comm.h
      ompi/mca/pml/dr/pml_dr_component.h
      ompi/mca/pml/dr/pml_dr_endpoint.h
      ompi/mca/pml/dr/pml_dr_recvfrag.h
      ompi/mca/pml/example/pml_example.h
      ompi/mca/pml/ob1/pml_ob1_comm.h
      ompi/mca/pml/ob1/pml_ob1_component.h
      ompi/mca/pml/ob1/pml_ob1_endpoint.h
      ompi/mca/pml/ob1/pml_ob1_rdmafrag.h
      ompi/mca/pml/ob1/pml_ob1_recvfrag.h
      ompi/mca/pml/v/pml_v_output.h
      opal/include/opal/prefetch.h
      opal/mca/timer/aix/timer_aix.h
      opal/util/qsort.h
      test/support/components.h

This commit was SVN r21855.

The following SVN revision numbers were found above:
  r2 --> open-mpi/ompi@58fdc18855
2009-08-20 11:42:18 +00:00
Ralph Castain
aca3e71ccd Don't declare us "bound" if the cpu mask is completely zero
This commit was SVN r21839.
2009-08-19 18:55:06 +00:00
Shiqing Fan
2a05de0dda Update a few comments of how OMPI uses Windows registry.
This commit was SVN r21828.
2009-08-18 16:32:45 +00:00
Rainer Keller
c3226b36b7 - It's BUS_ADRERR, not BUSADRERR...
- Fix typos.

This commit was SVN r21808.
2009-08-12 13:07:04 +00:00
Shiqing Fan
bce2f44154 Update related .windows files with proper compiling properties, in order to have a successful DSO build.
This commit was SVN r21805.
2009-08-12 08:55:58 +00:00
Shiqing Fan
fb4be6fad7 First step to enable DSO build on Windows.
- add a cmake module for searching libltdl libraries and headers
  - a configure option to enable DSO build, default OFF.
  - update a few source files for including correct header
    and loading correct mca libraries path/suffix.

This commit was SVN r21804.
2009-08-12 08:52:48 +00:00
George Bosilca
52c722352d The COMPLEX are back. Due to some compilers flags right now the
support for _Complex is disabled until we figure out the correct
black magic. So instead of using this nice C99 feature, we use the
a strcture with a double type, the same approach that worked pretty
well for the last couple of years. 

Switching from one mode to the other is done using the 
OPAL_USE_[FLOAT|DOUBLE|LONG_DOUBLE]__COMPLEX macros defined in
opal_datatype_internal.h at line 442.

This commit was SVN r21800.
2009-08-11 18:44:06 +00:00
Ralph Castain
1dc12046f1 Modify the OMPI paffinity and mapping system to support socket-level mapping and binding. Mostly refactors existing code, with modifications to the odls_default module to support the new capabilities.
Adds several new mpirun options:

* -bysocket - assign ranks on a node by socket. Effectively load balances the procs assigned to a node across the available sockets. Note that ranks can still be bound to a specific core within the socket, or to the entire socket - the mapping is independent of the binding.

* -bind-to-socket - bind each rank to all the cores on the socket to which they are assigned.

* -bind-to-core - currently the default behavior (maintained from prior default)

* -npersocket N - launch N procs for every socket on a node. Note that this implies we know how many sockets are on a node. Mpirun will determine its local values. These can be overridden by provided values, either via MCA param or in a hostfile

Similar features/options are provided at the board level for multi-board nodes.

Documentation to follow...

This commit was SVN r21791.
2009-08-11 02:51:27 +00:00
Rainer Keller
76469ea64a - Change the property of a few files, that obviously
don't need to be svn:executable...

This commit was SVN r21786.
2009-08-11 01:40:00 +00:00
Josh Hursey
bd6426d3dd This is a minor cleanup of the configure.m4 (per suggestion from Jeff).
Refs trac:1987
The patch for v1.3 attached to Ticket #1987 already includes this change.

I did not have a chance to commit this last night, so sorry for the delay.

This commit was SVN r21777.

The following Trac tickets were found above:
  Ticket 1987 --> https://svn.open-mpi.org/trac/ompi/ticket/1987
2009-08-07 23:38:54 +00:00
Rainer Keller
3f727f0e61 - Until either r21763 is backed out, unconstify complex types.
Complex should either be a struct of float on the ompi-layer
   or as C99 float _complex in opal.
   unconstify to not break windows / the mpi* wrappers.

This commit was SVN r21770.

The following SVN revision numbers were found above:
  r21763 --> open-mpi/ompi@668f001351
2009-08-06 14:42:47 +00:00
Josh Hursey
063f5b2ff6 After talking through the patch with Jeff, we have a couple more fixes to r21766 that should also go over to v1.3 in Ticket #1987.
* Check for {{{dlfcn.h}}} in the self component's configure.m4 (also clean up the .m4 a bit.
 * Adjust the priority of the BLCR component so that the self component has a higher priority (if the application went to the trouble of writing the routines, why not use them.) The 'self' component checks for the appropriate functions during query, so it know if it -can- be used during component selection.
 * Adjust some copyrights that I missed before
 * Fix a warning when casing the result of dlsym() into a function pointer. There is a bit of pointer magic to make this happen (thanks to the following website, and RedHat EL 4 man pages for illustrating it:
  http://www.opengroup.org/onlinepubs/009695399/functions/dlsym.html

Passing to Jeff for a final review of the patch before moving to v1.3.

This commit was SVN r21768.

The following SVN revision numbers were found above:
  r21766 --> open-mpi/ompi@91e52d062b
2009-08-05 22:07:37 +00:00
Josh Hursey
91e52d062b Fix the 'self' CRS component.
Due to the visibility patch to libltdl in r21731, this module can no longer access or use the libltdl interfaces directly. Instead just use the dlopen/dlsym/dlclose functions directly. This is a portability implication here, but for the moment it does not seem to bite us.

Also in this patch, cleanup some of the 'self' specific code paths.
 * opal-restart need not special case the 'self' component since it can now interact with it as if it were a normal component.
 * Cleanup the initialization of the cmd line arguments in opal-restart.
 * Make sure to mark opal-restart as a 'tool', but do so by setting the global variable directly instead of setting the environment variable, which could be inherited by the application.
 * Most of the functions in the 'self' component should not be used by a command line tool (exception being 'restart'), so make sure that if we accidently call them then errors are returned.
 * Increase the priority of the 'none' component to be above that of 'self' when being selected in a command line tool. This allows for both mpirun and opal-restart to work correctly with the 'self' module.

This commit was SVN r21766.

The following SVN revision numbers were found above:
  r21731 --> open-mpi/ompi@0278b86456
2009-08-05 16:21:51 +00:00
George Bosilca
668f001351 Add support for complex (complex8, complex16 and complex32) in the
opal datatype engine. These types are created from two consecutive 
basic types (float, double and long double).

This commit was SVN r21763.
2009-08-04 23:42:32 +00:00
Jeff Squyres
90d6491737 Since ompi_info is no longer written in C++, we no longer require a
C++ compiler in configure.  If we have a C++ compiler, then the MPI
C++ bindings are built by default.  If we don't have a C++ compiler,
then the MPI C++ bindings are not built by default.

--enable-mpi-cxx will now force an error if there is no C++ compiler
available.  --disable-mpi-cxx (or the lack of a C++ compiler) will now
disable many of the C++ compiler checks in configure.

Note that there are a few items to clean up regarding the difference
between C's _Bool type and C++'s bool type.  Right now, we assume that
they are the same.  But they aren't, and they shouldn't be treated as
such.  This cleanup will be forced in MPI-2.2 with the introduction of
the MPI_C_BOOL MPI datatype.

This commit was SVN r21755.
2009-08-04 11:54:01 +00:00
George Bosilca
5155eaf945 The opal datatype engine should _ALWAYS_ be initialized. Therefore move the
call to opal_datatype_init in the opal_util_init.

This commit was SVN r21754.
2009-08-03 16:46:33 +00:00
Jeff Squyres
98b0a7af3d Per http://www.open-mpi.org/community/lists/devel/2009/08/6555.php,
add an lt_dlerror() in the error output one of the error cases.

This commit was SVN r21751.
2009-08-03 16:29:52 +00:00
Jeff Squyres
9455eb804f Oops -- fix the type.
This commit was SVN r21750.
2009-08-03 16:26:15 +00:00
Jeff Squyres
7b1f65095b Update to match the current code and be a bit more explicit (since
others are currently looking at this code).

This commit was SVN r21746.
2009-07-30 12:45:59 +00:00
Jeff Squyres
cb653bc4e8 Change the test memalign() call to use an alignment of 4 so that some
debuggers stop complaining. :-)

This commit was SVN r21744.
2009-07-29 20:33:38 +00:00
Jeff Squyres
69139e4171 Print a warning if someone tries to set opal_ptmalloc2_disable via an
MCA parameter file.

This commit was SVN r21743.
2009-07-29 20:05:56 +00:00
Jeff Squyres
d12db20089 This function actually returns an int, not a bool (OPAL_SUCCESS or
OPAL_ERROR).  Also add a line to the docs describing that it's ok to
pass in NULL for the source_file.

This commit was SVN r21742.
2009-07-29 19:52:18 +00:00
Jeff Squyres
c7376ae053 Start using Libtool's shared library versioning scheme. See lengthy
note in VERSION file.

NOTE: the versions will ''always'' be 0:0:0 on the SVN trunk and
developer branches.  They will only have meaningful values (starting
with 0:0:0 in 1.3.4) on release branches.  Only RM's will modify these
values immediately preceeding a release.

This commit was SVN r21729.
2009-07-23 21:35:17 +00:00
Ralph Castain
c459615f8f When someone specifies a rank-file slot-list of N:*, stop the loop at the proper place (we were going through the loop one too many times).
Thanks to Eugene for spotting it.

This commit was SVN r21728.
2009-07-23 17:51:15 +00:00
Jeff Squyres
bfd689f0ef Per discussion on the mailing list, backing out r21723.
This commit was SVN r21725.

The following SVN revision numbers were found above:
  r21723 --> open-mpi/ompi@2250be582d
2009-07-22 00:02:00 +00:00
Jeff Squyres
38faae6eab Ignore this component until it can be fixed properly.
This commit was SVN r21724.
2009-07-21 22:35:45 +00:00
Iain Bason
2250be582d Added autodetect installdirs component. Currently supports Solaris and Linux.
* Installation directories will be inferred from the actual location
  of the shared library that contains the component.

* OPAL_PREFIX and other environment variables allow users to override
  the inferred directories.  They should no longer be necessary in
  most cases, though.

* Any directories that cannot be inferred will fall back to whatever
  is provided by the config installdirs component.

This commit was SVN r21723.
2009-07-21 20:19:38 +00:00
Shiqing Fan
4c3ea7a0d2 Add a missing header for defining O_BINARY on windows.
This commit was SVN r21719.
2009-07-20 09:00:58 +00:00
Aurelien Bouteiller
9cc2557f9c fixed a typo. oapl instead of opal
This commit was SVN r21711.
2009-07-17 22:20:53 +00:00
George Bosilca
03a0b04ab8 Get rid of all unused functions.
This commit was SVN r21704.
2009-07-16 19:53:07 +00:00
George Bosilca
3e971e61f3 The system headers are supposed to be protected by #ifdef and not by #if.
This commit was SVN r21700.
2009-07-16 18:27:33 +00:00
Shiqing Fan
957cdceb20 Another OMPI->OPAL renaming.
This commit was SVN r21659.
2009-07-14 06:54:17 +00:00
Shiqing Fan
f991c87c6a A few structures that need to be exported for Windows.
This commit was SVN r21658.
2009-07-14 06:53:42 +00:00
George Bosilca
a934b9d975 Add the Open MPI specific part based on a patch from Manuel. Add the
sparc and alpha. A manpage patch is also included. This partially fixes
ticket #1973.

This commit was SVN r21654.
2009-07-13 20:01:12 +00:00
George Bosilca
81c16ac317 Add missing header.
This commit was SVN r21653.
2009-07-13 19:40:31 +00:00
Shiqing Fan
503f2817b3 Corresponding changes to r21641 and r21642 for Windows.
- Add a CMake macro for checking OPAL_MAX_XXX values, re-written from OPAL_WITH_OPTION_MIN_MAX_VALUE m4 function. 
- Definition prefix changes and additional datatype alignments checking.
- Finish the datatype splitting on Windows too. :-)

This commit was SVN r21649.

The following SVN revision numbers were found above:
  r21641 --> open-mpi/ompi@6c5532072a
  r21642 --> open-mpi/ompi@c971c09eb6
2009-07-13 17:39:41 +00:00
Shiqing Fan
2f552eb8c1 Missing C_DECLS.
This commit was SVN r21648.
2009-07-13 17:31:42 +00:00
Rainer Keller
6c5532072a - Split the datatype engine into two parts: an MPI specific part in
OMPI
   and a language agnostic part in OPAL. The convertor is completely
   moved into OPAL.  This offers several benefits as described in RFC
   http://www.open-mpi.org/community/lists/devel/2009/07/6387.php
   namely:
    - Fewer basic types (int* and float* types, boolean and wchar
    - Fixing naming scheme to ompi-nomenclature.
    - Usability outside of the ompi-layer.
 - Due to the fixed nature of simple opal types, their information is
   completely
   known at compile time and therefore constified
 - With fewer datatypes (22), the actual sizes of bit-field types may be
   reduced
   from 64 to 32 bits, allowing reorganizing the opal_datatype
   structure, eliminating holes and keeping data required in convertor
   (upon send/recv) in one cacheline...
   This has implications to the convertor-datastructure and other parts
   of the code.
 - Several performance tests have been run, the netpipe latency does not
   change with
   this patch on Linux/x86-64 on the smoky cluster.
 - Extensive tests have been done to verify correctness (no new
   regressions) using:
   1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and
    ompi-ddt:
    a. running both trunk and ompi-ddt resulted in no differences
       (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run
       correctly).
    b. with --enable-memchecker and running under valgrind (one buglet
       when run with static found in test-suite, commited)
   2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt:
      all passed (except for the dynamic/ tests failed!! as trunk/MTT)
   3. compilation and usage of HDF5 tests on Jaguar using PGI and
      PathScale compilers.
   4. compilation and usage on Scicortex.
 - Please note, that for the heterogeneous case, (-m32 compiled
   binaries/ompi), neither
   ompi-trunk, nor ompi-ddt branch would successfully launch.

This commit was SVN r21641.
2009-07-13 04:56:31 +00:00
Jeff Squyres
d7d07e0720 Improve the help messages from r20706.
This commit was SVN r21616.

The following SVN revision numbers were found above:
  r20706 --> open-mpi/ompi@248bbb8a2f
2009-07-09 11:58:31 +00:00
George Bosilca
2570a15651 Add a TODO bullet for later processing ...
This commit was SVN r21611.
2009-07-07 17:27:47 +00:00
George Bosilca
b85e3636f3 Cope with the case where IPv6 headers are not available.
This commit was SVN r21593.
2009-07-02 18:00:26 +00:00
Ralph Castain
d3fb39073f Initialize a variable to ensure we get the correct number of bound processors
This commit was SVN r21590.
2009-07-02 17:48:04 +00:00
Shiqing Fan
0e09cb650e The kernel index of the network interface wasn't set on Windows, it really caused a lot of problems.
This commit was SVN r21587.
2009-07-02 14:44:41 +00:00
Shiqing Fan
22666721a5 Fix a typo.
This commit was SVN r21584.
2009-07-02 08:49:22 +00:00
Shiqing Fan
c8284907c4 Another header for using _getch on Windows.
This commit was SVN r21537.
2009-06-26 13:07:08 +00:00
Shiqing Fan
77f33d182b Add another definition for deprecated UNIX function on Windows, silent the warnings.
This commit was SVN r21507.
2009-06-24 18:14:23 +00:00
Jeff Squyres
246caafe06 Correct the logic of the check for the env variable
OMPI_MCA_memory_ptmalloc2_disable and also add an explicit check for
FAKEROOTKEY (see http://bugs.debian.org/531522).

This commit was SVN r21489.
2009-06-20 11:22:06 +00:00
Jeff Squyres
f42727707b Per http://bugs.debian.org/531522, add an MCA param/environment
variable to allow the disabling of the ptmalloc2 component at init
time.

This commit was SVN r21479.
2009-06-19 10:50:23 +00:00
Jeff Squyres
6777f01380 Also look for /dev/ipath
This commit was SVN r21410.
2009-06-11 00:35:21 +00:00
Ralph Castain
f966d9f972 Fix visibility issues with opal_graph functions.
Fix the carto test so it can compile - need to update input file so it can run

This commit was SVN r21403.
2009-06-09 15:02:57 +00:00
Ralph Castain
c3c1ab1337 Correct a comment in paffinity.h about what paffinity_get returns - it was inaccurate.
Revamp the affinity detection/set procedure in mpi_init to correctly detect when we have already been bound to processors, given the revised understanding of paffinity_get. Add a new paffinity macro to make checking for already bound a little nicer.

This commit was SVN r21402.
2009-06-09 14:33:35 +00:00
Josh Hursey
70333b9441 Some components were still using OMPI_*_VERSION instead of OPAL_*_VERSION, so convert them over (Jeff is taking care of PLPA, so that is not included here).
This commit was SVN r21384.
2009-06-05 15:34:59 +00:00