1. Remove debug output in iallgather (I have forgotten to remove it).
2. Remove an incorrect comment in description of ibcast
Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
PR #5450 addresses MPI_IN_PLACE processing for basic collective algorithms.
But in conjunction with that, we need to check for MPI_IN_PLACE in tuned paths
as well before calling ompi_datatype_type_size() as otherwise we segfault.
MPI spec also stipulates to ignore sendcount and sendtype for Alltoall and
Allgatherv operations. So, extending the check to these algorithms as well.
Signed-off-by: Aravind Gopalakrishnan <Aravind.Gopalakrishnan@intel.com>
In order for this to work, error management needs to also be added to
NBC, from separate PR
Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>
The error field of requests needs to be rearmed at start, not at create
Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>
using the standard $USER and $HOSTNAME environment variables
to make reproducible builds possible.
See https://reproducible-builds.org/ for why this is good.
This helps improve issue #3759
Signed-off-by: Bernhard M. Wiedemann <bwiedemann@suse.de>
Some compilers complain when comparing signed and unsigned. romio321
was doing just this. The check is meant to check whether a size (which
is an ADIO_Offset-- a signed number) will work with memcpy which takes
a size_t. To silence the warning I added a new type (ADIO_Size) which
is an unsigned type and cast the ADIO_Offset to this new type.
Fixes#5951
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
The monitoring PML hides it's existence from the OMPI infrastructure by
removing itself from the list of PML loaded components, remaining hidden
until MPI_Finalize.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
With this patch the best PML is selected earlier, before finalizing
the others PML. This provides a simpler mechanism to intercept and
highjack the PML (as done in the monitoring PML)
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
An implementation of R. Rabenseifner's algorithm for MPI_Iallreduce.
This algorithm is a combination of a reduce-scatter implemented with recursive vector halving
and recursive distance doubling, followed either by an allgather.
Limitations:
-- count >= 2^{\floor{\log_2 p}}
-- commutative operations only
-- intra-communicators only
Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
check for providing a data representation that is actually supported
by ompio.
Add also one check for a non-NULL pointer in mpi/c/file_set_view
for the data representation.
Also fixes parts of issue #5643
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
Several fixes to string handling:
1. strncpy() -> opal_string_copy() (because opal_string_copy()
guarantees to NULL-terminate, and strncpy() does not)
2. Simplify a few places, such as:
* Since opal_string_copy() guarantees to NULL terminate, eliminate
some memsets(), etc.
* Use opal_asprintf() to eliminate multi-step string creation
There's more work that could be done; e.g., this commit doesn't
attempt to clean up any strcpy() usage.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
this ensures that all processes are done modifying a file
before syncing. Fixes an error in the testmpio testsuite.
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
return MPI_ERR_ARG if the size of the fileview is not a
multiple of the size of the etype provided.
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
return MPI_ERR_ACCESS if the user tries to read from a file
that was opened using MPI_MODE_WRONLY
return MPI_ERR_READ_ONLY if the user tries to write a file
that was opened using MPI_MODE_RDONLY
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
While we require C99 to build Open MPI, we do not require C99 to build
user MPI applications. As such, we shouldn't have C99-style comments
(i.e., "//"-style) in mpi.h.in.
Thanks to @AdamSimpson for reporting the issue.
This commit simply converts a //-style comment to a /**/-style
comment. No code or logic changes.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
Implements recursive doubling algorithm for MPI_Iallgather.
The algorithm can be used only for power-of-two number of processes.
Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
Make sure all pending communications are done on all ranks before
closing the window. This way it will be safe to close the endpoints when
closing the component.
Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
An implementation of R. Rabenseifner's algorithm for MPI_Ireduce.
This algorithm is a combination of a reduce-scatter implemented with recursive vector halving
and recursive distance doubling, followed either by a gather.
Limitations:
-- count >= 2^{\floor{\log_2 p}}
-- commutative operations only
-- intra-communicators only
Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
OpenJDK 11 changed the default javadoc output HTML version to HTML 5
from HTML 4.01. It causes an error on building Open MPI configured
with `--enable-mpi-java` (default: disable). This fix is compatible
with older OpenJDK.
I don't know whether this problem exists with other vender's JDKs.
But this fix should be compatible with other JDKs because the new
syntax is used in other places in the same file.
Thanks to Siegmar Gross for the bug report.
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
