ports/openmpi
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Nathan Hjelm
63e744ffc6 osc/rdma: use only a single btl registration for local state 
This commit fixes a bug that can occur on Cray Gemini networks. If
multiple registrations are used for the local state then we looks the
atomicity guarantees. To avoid issues like this use only a single
registration handle for all local state on a node.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-22 15:51:19 -06:00
Nathan Hjelm
f690fc8fd5 osc/pt2pt: fix warnings 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-22 15:50:40 -06:00
Jeff Squyres
86270e7613 MPI_File_open: add note about allowable chars in filenames 
Thanks to @nasailja for the original text suggestion.
 2015-10-22 11:56:53 -07:00
Nathan Hjelm
e4219aa692 Merge pull request #1059 from hjelmn/osc_fixes 
osc/rdma: bug fixes
 2015-10-22 11:25:51 -06:00
Nathan Hjelm
72f8155ad2 Merge pull request #1058 from yburette/master 
mtl/ofi: Increase priority.
 2015-10-22 10:54:39 -06:00
Nathan Hjelm
97c9732bad osc/rdma: bug fixes 
This commit fixes the following:

 - CIDs 1328491, 1328492: Dead code caused by typos in a prior
   commit.

 - Fix the calculation of dynamic memory regions. This was causes
   incorrect RMA range errors when accessing the last partial page of
   an attachment.

 - Fix a SEGV when using dynamic memory windows with local state (all
   processes on the same node).

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-22 09:49:38 -06:00
yohann
889c76634e mtl/ofi: Increase priority. 2015-10-22 08:39:36 -07:00
Howard Pritchard
ce8e241922 Merge pull request #1055 from nrgraham23/java_warnings_fix 
Fix Java related warnings
 2015-10-22 08:17:45 -06:00
Nathan Hjelm
b2fa2a9bef Merge pull request #1056 from hjelmn/osc_fixes 
osc/pt2pt: reset all_sync sync object before sending complete messages
 2015-10-21 19:40:28 -06:00
Nathan Hjelm
864f88a2a3 osc/pt2pt: reset all_sync sync object before sending complete messages 
This commit fixes a bug that occurs when a post message comes in when
sending complete messages or while waiting for all outgoing messages
to flush. In that case the post message might get incorrecly
associated with the ending sync object.

References open-mpi/ompi#1012

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-21 18:30:08 -06:00
Nathaniel Graham
c4d70ab425 Fix Java related warnings 
This commit fixes java related warnings.

Fixes #881

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-10-21 17:14:25 -07:00
rhc54
0bc51375f3 Merge pull request #1004 from rppendya/rppendya_list_release 
Releasing the list items when list destructor is called
 2015-10-21 14:34:19 -07:00
Nathan Hjelm
386991d590 Merge pull request #1052 from hjelmn/osc_rdma_fixes 
osc/rdma: use standard verbosity levels
 2015-10-21 13:21:50 -06:00
rhc54
a3ba62dcb9 Merge pull request #1051 from lrrountr/dssunpack_objrelease 
Adding missing object release for the object created during unpack node stat.
 2015-10-21 12:06:35 -07:00
Nathan Hjelm
9476c7bbca osc/rdma: use standard verbosity levels 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-21 12:31:41 -06:00
yohann
abe5002ee9 mtl/ofi: remove threading and progress hints. 2015-10-21 10:25:08 -07:00
Leobardo Ruiz Rountree
a99bd035ec Adding missing object release call for the new object created during the unpack node stat call. 2015-10-21 11:27:27 -05:00
Mike Dubman
abbb74d5ef Merge pull request #1050 from yosefe/topic/ucx-reduce-priority 
ucx: reduce components priority to 5.
 2015-10-21 18:24:58 +03:00
yosefe
cc76db8d39 ucx: reduce components priority to 5. 2015-10-21 17:38:25 +03:00
Mike Dubman
d5d8429a25 Merge pull request #1048 from miked-mellanox/topic/plat_ucx 
BUILD: update mellanox platform file
 2015-10-21 14:33:51 +03:00
Mike Dubman
cdffe4f92d BUILD: update mellanox platform file 
add support for UCX
 2015-10-21 11:39:30 +03:00
Mike Dubman
8490a96f22 Merge pull request #1041 from miked-mellanox/topic/build_platform 
BUILD: add support for --with-platform-patches-dir=DIR
 2015-10-21 11:20:40 +03:00
Gilles Gouaillardet
a0782e1c7e mpi: MPI_Neighbor_all* and MPI_Ineighbor_all* do not work with 
inter communicators (fail with MPI_ERR_COMM) or non process topologies
communicators (fail with MPI_ERR_TOPOLOGY)
 2015-10-21 16:21:19 +09:00
Mike Dubman
4ea13f10f6 Merge pull request #1008 from alex-mikheev/topic/ucx_support 
UCX support for ompi and oshmem
 2015-10-21 09:33:33 +03:00
Gilles Gouaillardet
3b0b929883 ompi: MPI_IN_PLACE is not a valid argument of MPI_Neighbor_all* and MPI_Ineighbor_all* 2015-10-21 14:46:35 +09:00
Gilles Gouaillardet
256976a108 mpi: MPI_IN_PLACE is not a valid argument of MPI_All* and MPI_Iall* with an inter communicator 2015-10-21 14:46:28 +09:00
Gilles Gouaillardet
9b31530d5c man: misc fix of revamp of MPI_File_* and MPI_Register_datarep man pages 
that fixes commit open-mpi/ompi@b17c89c1e6 :
- remove unnecessary empty lines
- add USE mpi in MPI_Register_datarep

Thanks Jeff for noticing this
 2015-10-21 09:41:01 +09:00
Nathan Hjelm
763744a32c Merge pull request #1046 from hjelmn/osc_rdma_fixes 
osc/rdma: bug fixes
 2015-10-20 16:44:38 -06:00
Nathan Hjelm
b8ee05d352 osc/rdma: bug fixes 
This commit fixes several bugs in the osc/rdma component:

 - Complete aggregated requests immediately. Completion of RMA
   requests indicates local completion anyway. This fixes a hang in
   the c_reqops test.

 - Correctly mark Rget_accumulate requests.

 - Set the local base flag correctly on the local peer.

 - Clear or set the no locks flag on the window if the value is
   changed by MPI_Win_set_info.

 - Actually update the target when using MPI_OP_REPLACE.

Fixes open-mpi/ompi#1010

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-20 15:27:15 -06:00
Ryan Grant
f60c506c68 Merge pull request #999 from tkordenbrock/topic/add.triggered.gather 
coll-portals4: add gather and igather implementations that use Portals4 triggered operations
 2015-10-20 14:59:09 -06:00
Nathan Hjelm
40845d36bc Merge pull request #1045 from hjelmn/openib_fixes 
btl/openib: fix argument type for internal atomic function
 2015-10-20 14:32:59 -06:00
Raghavendra Pendyala
720fa860ee changing the destruct function of list release API to release list items 
caused a bug in oshmem application. Fixing the bug with this patch
 2015-10-20 12:58:23 -07:00
Nathan Hjelm
1427a47408 Merge pull request #1044 from hjelmn/opal_keval_fix 
opal/keyval: reset buffer pointer/size in finalize
 2015-10-20 13:55:47 -06:00
Nathan Hjelm
55d24ee7a3 btl/openib: fix argument type for internal atomic function 
This was fixed on my btl 3.0 branch but the changeset got lost in a
rebase. Fixes issues with lock ups when using osc/rdma.

References open-mpi/ompi#1010

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-20 13:47:28 -06:00
Nathan Hjelm
6d3041335f opal/keyval: reset buffer pointer/size in finalize 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-20 13:10:44 -06:00
yosefe
a313588337 ompi: Add UCX PML. 2015-10-20 19:46:06 +03:00
yosefe
502dc8aaa4 add pml-specific field in OMPI datatype. 
PML UCX will use it to cache a handle for UCX datatype.
 2015-10-20 19:46:06 +03:00
Alex Mikheev
f2b501a862 oshmem: Add UCX spml. 2015-10-20 19:46:02 +03:00
Alex Mikheev
b020b628fc oshmem/memheap: optimized mkey lookup. 
Fast path lookup is done in inline funcion.
 2015-10-20 19:45:51 +03:00
yosefe
bd3f4c8cc7 spml/memheap: add support for mkey unpack. 2015-10-20 19:45:50 +03:00
Alex Mikheev
8fa14386ea spml_ikrit: fixes typo in .h file. 2015-10-20 19:36:41 +03:00
Mike Dubman
14d7fcbe2d BUILD: add support for --with-platform-patches-dir=DIR 
sync with https://github.com/open-mpi/ompi-release/pull/662
 2015-10-20 17:14:15 +03:00
Jeff Squyres
630d6bf800 Merge pull request #1038 from kawashima-fj/pr/man-correction 
man: Various manpage corrections
 2015-10-20 06:40:05 -04:00
KAWASHIMA Takahiro
7ab464fbb4 Revert "man: Remove unnecessary spaces in front of parameters." 
This reverts commit 3253a30ab2.

Because Gilles' b17c89c1 committed a few hours ago has the same change,
my RP branch had a conflict.
 2015-10-20 15:32:45 +09:00
KAWASHIMA Takahiro
373a94a3f1 man: Revert my MPI_File_iwrite_shared manpage change. 
This reverts commit 2226cdb3da
and                 d9c93c9f5d.

Because Gilles' b17c89c1 committed a few hours ago has the same change,
my RP branch had a conflict.
 2015-10-20 14:41:22 +09:00
Gilles Gouaillardet
2bd77ed4f9 mpi: fail with MPI_ERR_INTERN if MPI_IN_PLACE is used with MPI_I*alltoall* 
currently, MPI fails with MPI_ERR_ARG. This is counter intuitive since
MPI_IN_PLACE is a legitimate parameter. MPI_IN_PLACE might not be correctly
implemented by all the non blocking modules (libnbc, ...) so fail with
MPI_ERR_INTERN for the time being.
 2015-10-20 14:12:33 +09:00
Gilles Gouaillardet
b17c89c1e6 man: revamp MPI_File_* and MPI_Register_datarep man pages 
- suggest USE mpi instead of INCLUDE 'mpif.h'
- fix indentation
Thanks Jeff for pointing this issue.
 2015-10-20 13:12:12 +09:00
KAWASHIMA Takahiro
d9c93c9f5d man: Add const that is removed accidentally in 2226cdb. 2015-10-20 08:49:10 +09:00
Nathan Hjelm
9602484568 Merge pull request #1040 from hjelmn/mtl_priority 
Change how cm's priority is calculated
 2015-10-19 14:18:36 -06:00
Nathan Hjelm
53f6b57c0a pml/cm: use the priority of the mtl component 
This commit changes the priority of mtl components to be relative to
pml/ob1 and updates the mtl interface to expose this priority. cm now
sets its own priority based on the priority of the selected mtl
component.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-19 12:32:42 -06:00