ports/openmpi
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Howard Pritchard
3521a0f9ff Merge pull request #1016 from hppritcha/topic/fix_issue_1005 
btl/ugni: fix very poor aries bw problem
 2015-10-14 10:10:28 -06:00
Nathan Hjelm
06dd9ec317 bump mpi version to 3.1 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-14 09:52:30 -06:00
Jeff Squyres
5d97d7b5d5 Merge pull request #1017 from jsquyres/pr/fix-cr-exits 
dynamics: fix OPAL_CR_EXIT_LIBRARY()
 2015-10-14 05:45:05 -04:00
Howard Pritchard
eaba98ce5d btl/ugni: fix very poor aries bw problem 
The handling of RDMA get alignment in ugni BTL for Aries
(cray xc) was wrong, resulting in very poor bandwidth
for ugni BTL on aries.

Verified using osu_bw now gives sensible bandwidth on
Aries.

Fixes #1005

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-10-13 16:01:17 -05:00
Jeff Squyres
62351f442a help: remove stale help messages and files 
Found by contrib/check-help-strings.pl.
 2015-10-13 16:50:20 -04:00
Jeff Squyres
a4adee5329 dynamics: fix OPAL_CR_EXIT_LIBRARY() 
Noticed that these were wrong will working on a different pull
request.  Submit these fixes indepdent of other changes, just to keep
things separated.
 2015-10-13 10:57:33 -07:00
Todd Kordenbrock
7c738fb657 coll-portals4: add gather and igather implementations that use Portals4 triggered operations 
This commit adds implementations of gather and igather using
Portals4 triggered operations.  The default algorithm is linear,
but binomial can be selected using an MCA parameter -
coll_portals4_use_binomial_gather_algorithm.
 2015-10-13 11:26:35 -05:00
Jeff Squyres
71dfba9ed3 Merge pull request #845 from ggouaillardet/topic/pmpi_vs_mpi 
Remove --enable-mpi-profile configure option (i.e., always build PMPI bindings)
 2015-10-13 12:13:10 -04:00
Jeff Squyres
77583b14d4 Merge pull request #1013 from jsquyres/pr/opalincludedir 
Fix libevent / hwloc includedir --with-devel-headers stuff
 2015-10-13 09:35:01 -04:00
Jeff Squyres
9045d6de00 proc.c: fix some compiler warnings 
Eliminate unused variables and fix a signed/unsigned comparison issue.
 2015-10-13 09:34:18 -04:00
Jeff Squyres
12e796dcaf hwloc: headers are not in $includedir 
They are in $opalincludedir.  Use the neutral "$pkgincludedir", which
will get translated under the covers to opalincludedir.
 2015-10-13 05:59:52 -07:00
Jeff Squyres
f0741b8f2e Merge pull request #962 from ggouaillardet/topic/f08_manpages 
Add Fortran 2008 syntax to the manpages
 2015-10-13 06:19:53 -04:00
Gilles Gouaillardet
a88b4a741f configury: fix a typo in OPAL_CHECK_PACKAGE comment 
no code change
 2015-10-13 14:15:06 +09:00
Gilles Gouaillardet
645310612b configury: replace ompi_check_openib_happy with opal_check_openib_happy 2015-10-13 14:12:52 +09:00
Gilles Gouaillardet
3e469662ad trim man pages if no c++/f08/fortran 2015-10-13 10:21:42 +09:00
Ralph Castain
64bea51cdf Update ignores for new oshmem man pages 2015-10-12 17:30:12 -07:00
Gilles Gouaillardet
66c30b2721 Add Fortran 2008 syntax to the manpages 2015-10-13 09:21:45 +09:00
Gilles Gouaillardet
291a464efb configury: remove the --enable-mpi-profiling option 
and directly call the PMPI_* symbols from C and Fortran bindings
 2015-10-13 08:52:35 +09:00
Gilles Gouaillardet
40b57ff347 fortran: only generate the correct symbol based on the compiler mangling. 2015-10-13 08:52:03 +09:00
Gilles Gouaillardet
53b952dc2b oshmem: invoke the C PMPI_* subroutines instead of the MPI_* ones 
when profiling is built.
This prevents oshmem subroutines from being wrapped twice by third
party tools (e.g. once in oshmem and once in MPI)
see discussion starting at http://www.open-mpi.org/community/lists/devel/2015/08/17842.php

Thanks to Bert Wesarg for bringing this to our attention
 2015-10-13 08:52:03 +09:00
Gilles Gouaillardet
16d65a2762 fortran/mpif-h: invoke the C PMPI_* subroutines instead of the MPI_* ones 
when profiling is built.
This prevents Fortran subroutines from being wrapped twice by third
party tools (e.g. once in Fortran and once in C)
see discussion starting at http://www.open-mpi.org/community/lists/devel/2015/08/17842.php
 2015-10-13 08:52:02 +09:00
Jeff Squyres
1dfb685f8d libevent: headers are not in $includedir 
They are in $opalincludedir.  Use the neutral "$pkgincludedir", which
will get translated under the covers to opalincludedir.
 2015-10-12 15:20:59 -07:00
Jeff Squyres
e8b4a4c800 wrappers: add support for opallibdir, opalincludedir 2015-10-12 15:18:31 -07:00
Jeff Squyres
eeddb7abc1 ompi_setup_mpi_fortran.m4: add more verbosity 
Add a little more to the verbose messages from d7e6daf.
 2015-10-12 10:26:08 -07:00
Jeff Squyres
fcb7fc6b56 Merge pull request #990 from ggouaillardet/topic/f08_vs_pmpi 
configury: do not build usempif08 is PMPI is not built
 2015-10-12 13:24:22 -04:00
rhc54
db467d1c8f Merge pull request #969 from annu13/master 
sync with PMIX master
 2015-10-09 16:04:20 -07:00
annu13
cc5e1e26a5 sync with pmix master (repo_rev git69c398e) 2015-10-09 15:17:43 -07:00
Nathan Hjelm
d8dc5292ed Merge pull request #1002 from hjelmn/ompi_coverity 
ompi: fix coverity issues
 2015-10-09 12:27:41 -06:00
Jeff Squyres
f9e9b69d93 Merge pull request #1001 from igor-ivanov/master 
orte/mca/rmaps: Improve orte_rmaps_dist_device help message
 2015-10-09 14:07:47 -04:00
Raghavendra Pendyala
7579ae3086 Releasing the list items when list destructor is called 2015-10-09 10:49:44 -07:00
bosilca
1310acc83f Merge pull request #912 from bosilca/topic/coll_requests 
This patch fixes the issues identified by @ggouaillardet in the IBM tests (collectives and topologies). It also improves the memory usage of OMPI, as a communicator without collective communications will never allocate the array of requests needed to coordinate the basic collective algorithms. This ticket replaced #790.
 2015-10-09 11:27:07 -04:00
Igor Ivanov
489f27f8e9 orte/mca/rmaps: Improve orte_rmaps_dist_device help message 
See: https://github.com/open-mpi/ompi/issues/953
 2015-10-09 17:58:07 +03:00
Nathan Hjelm
4cb42f8264 ompi: fix coverity issues 
Fixes CID 715741: Logically dead code

Verified. Removed dead code.

Fixes CID 1320878: Resource leak

Free proc_list before returning.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2015-10-09 08:41:27 -06:00
Ryan Grant
e019203499 Merge pull request #1000 from tkordenbrock/topic/init.osc.datatypes 
osc-portals4: Initialize datatype in MPI_Get_accumulate and MPI_Rget_accumulate
 2015-10-09 08:05:18 -06:00
Todd Kordenbrock
141b20d991 osc-portals4: Initialize datatype in MPI_Get_accumulate and MPI_Rget_accumulate 
Fix code paths that didn't convert the MPI datatype to the
corresponding Portals4 datatype.

Thanks to Nicolas Chevalier (@shawone) for finding this bug and
submitting a patch.
 2015-10-08 12:17:19 -05:00
Jeff Squyres
76dab8002d NEWS: Got @dmt4's real name: Dimitar Pashov 2015-10-08 09:45:56 -07:00
Jeff Squyres
7946d3d80f NEWS: sync one more 1.10.1 bullet 2015-10-08 09:26:43 -07:00
Gilles Gouaillardet
e946c82847 Revert "coll/basic: fix segmentation fault in neighborhood collectives if the degree" 
This partially reverts commit open-mpi/ompi@76204dfafe.
 2015-10-08 12:00:41 -04:00
Gilles Gouaillardet
99cca2cfd3 Revert "* comment on communicator creation in mca_topo_base_dist_graph_create(...)" 
This partially reverts commit open-mpi/ompi@27e4389259.
 2015-10-08 12:00:41 -04:00
George Bosilca
a8bdd8f668 Don't lose the pointer to the request array. Patch provided by 
@ggouaillardet.
 2015-10-08 12:00:41 -04:00
George Bosilca
88492a1e12 Consistently use the request array for all modules (single array stored 
in the base).
Correctly deal with persistent requests (they must be always freed when
they are stored in the request array associated with the communicator).
Always use MPI_STATUS_IGNORE for single request waiting functions.
 2015-10-08 12:00:41 -04:00
George Bosilca
01b32caf98 Update the basic module to dynamically allocate the right 
number of requests.

Remove unnecessary fields.We don't need these fields.
 2015-10-08 12:00:41 -04:00
George Bosilca
a324602174 Never allocate a temporary array for the requests. Instead rely on the 
module_data to hold one with the largest necessary size. This array is
only allocated when needed, and it is released upon communicator
destruction.
 2015-10-08 12:00:41 -04:00
Jeff Squyres
8cc39f7192 NEWS: sync with v1.10.1 bullets 2015-10-08 07:44:09 -07:00
Ryan Grant
8134ba76f1 Merge pull request #998 from tkordenbrock/topic/fix.incorrect.ompi_proc.cast 
Looks good to me.

mtl-portals4: fix bug in the Portals4 get_peer family
 2015-10-08 08:38:16 -06:00
Ryan Grant
4addab8e16 Merge pull request #997 from tkordenbrock/topic/fix.debug.msg 
coll-portals4: allreduce: remove extra %d from error message.
 2015-10-08 08:36:30 -06:00
Nathan Hjelm
90db00e37f Merge pull request #996 from hjelmn/openib_progress_thread 
btl/openib: remove extra threads
 2015-10-08 07:31:27 -06:00
Todd Kordenbrock
88d79efd9f mtl-portals4: fix bug in the Portals4 get_peer family 
The Portals4 get_peer family incorrectly cast the ompi_proc_t to
ptl_process_t and returned that as the peer.  The ptl_process_t is
actually found in the endpoint array.  This commit fixes the
Portals4 get_peer family to return the dereferenced endpoint
pointer.
 2015-10-08 07:57:48 -05:00
Todd Kordenbrock
f33b0c1cdf coll-portals4: allreduce: remove extra %d from error message. 2015-10-08 07:57:33 -05:00
Jeff Squyres
1929bb02ff Merge pull request #993 from miked-mellanox/topic/platform_patches_arg 
BUILD: add --with-platform-patches-dir=DIR
 2015-10-08 07:00:55 -05:00