http://marc.info/?l=linux-mm-commits&m=127352503417787&w=2 for more
details.
* Remove the ptmalloc memory component; replace it with a new "linux"
memory component.
* The linux memory component will conditionally compile in support
for ummunotify. At run-time, if it has ummunotify support and
finds run-time support for ummunotify (i.e., /dev/ummunotify), it
uses it. If not, it tries to use ptmalloc via the glibc memory
hooks.
* Add some more API functions to the memory framework to accomodate
the ummunotify model (i.e., poll to see if memory has "changed").
* Add appropriate calls in the rcache to the new memory APIs to see
if memory has changed, and to react accordingly.
* Add a few comments in the openib BTL to indicate why we don't need
to notify the OPAL memory framework about specific instances of
registered memory.
* Add dummy API calls in the solaris malloc component (since it
doesn't have polling/"did memory change" support).
This commit was SVN r23113.
It is okay to not have a paffinity module IF you aren't using paffinity anyway. So don't error out of MPI_Init because a paffinity module wasn't selected.
Cleanup error reporting in the odls default module to (once and for all!) eliminate messages originating in the fork'd process. Create some new error codes to allow us to pass enough info back to the parent process to provide useful error messages.
This commit was SVN r23106.
and opal_atomic_lifo_pop. Adds memory barriers to remove the race
condition
This commit was SVN r23014.
The following Trac tickets were found above:
Ticket 2355 --> https://svn.open-mpi.org/trac/ompi/ticket/2355
done this way a long time ago for the "gee whiz!" factor -- when in
reality, they really only need one-of-many-run-time priority
selection).
Changed run-time priorities to be as follows:
* darwin: 20
* linux: 20
* posix: 10
* solaris: 30
* test: 5
* windows: 20
I have a very dim (possibly untrue) recollection that Solaris needs to
have a higher priority than others just to ensure that no other is
chosen under Solaris. Make all other "native" components have a
priority of 20 (they shouldn't conflict with each other). Make the
posix fallback component have a priority of 10. Make the test
component priority 5, meaning someone can always select it, but you
can also make a "never select me" component that prioritizes itself
under test.
This commit was SVN r22997.
modify the OPAL_PAFFINITY_PROCESS_IS_BOUND macro to search the cpuset for
the maximum possible number of cpus rather than just the number of cpus
currently online. This corrects a problem where mpi_paffinity_alone was
not working properly on systems in which there can be cpu namespaces with
holes, such as on ppc64 with smt off (as discussed in #2365).
This commit was SVN r22927.
#if directives -- had to change a pair of #if conditionals in
opal/util/stacktrace.c to make the PGI compiler accept it.
This commit was SVN r22923.
The following Trac tickets were found above:
Ticket 2366 --> https://svn.open-mpi.org/trac/ompi/ticket/2366
1. fix a bug that caused an infinite loop in configure when specifying want-ft but not want-ft-thread by removing a stale reference to the opal-progress-thread option
2. add want-ft=orcm so we can build the orcm errmgr component
3. cleanup the use of "ompi_want_ft_xxx" and replace it with "opal_want_ft_xxx" so that naming conventions are preserved
This commit was SVN r22885.
Adds memory barriers to remove race condition which can
occur on PowerPC architectures (and probably others)
This commit was SVN r22880.
The following Trac tickets were found above:
Ticket 2355 --> https://svn.open-mpi.org/trac/ompi/ticket/2355
#2322.
The short version is that this patch consolidates two pieces of code
that call the back-end munmap and ensures that (if dlsym is used) the
corresponding dlsym is only invoked once and that the variable holding
the result is volatile.
This commit was SVN r22863.
The following Trac tickets were found above:
Ticket 2104 --> https://svn.open-mpi.org/trac/ompi/ticket/2104
Remove the --enable-progress-threads option as this is no longer functional, and hardcode OPAL_ENABLE_PROGRESS_THREADS to 0.
Replace the --enable-mpi-threads option with --enable-mpi-thread-multiple as this is clearer as to meaning. This option automatically turns "on" opal thread support if it wasn't already so specified. If the user specifies --disable-opal-multi-threads --enable-mpi-thread-multiple, we will error out with a message
Add a new --enable-opal-multi-threads option that turns "on" opal thread support without doing anything wrt mpi-thread-multiple
This commit was SVN r22841.
Aleksej Saushev.
Dont use bash or bashism in shell scripts
We should use Posix' setpgid(0,0), which is equivalent to setpgrp().
This commit was SVN r22829.
Many of the OPAL_ENABLE_FT should be OPAL_ENABLE_FT_CR, so fix those.
The OPAL Layer INC should call opal_output on restart so that it can refresh the string it prints to reflect the current pid/hostname which may have changed.
This commit was SVN r22824.
bug: libmpi_f90 had libmpi.la in its LIBADD instead of libmpi_f77.la.
Fixes trac:2244.
This commit was SVN r22704.
The following Trac tickets were found above:
Ticket 2244 --> https://svn.open-mpi.org/trac/ompi/ticket/2244
discussed extensively. See
https://svn.open-mpi.org/trac/ompi/ticket/2092 and the RFC thread
http://www.open-mpi.org/community/lists/devel/2010/02/7447.php.
Specifically:
* Create LT convenience libraries for OPAL and ORTE if the layer
above them is being created (use the already-defined
AM_CONDITIONALs to know if the project above us is being built).
* ORTE slurps in the LT convenience library for OPAL; OMPI slurps in
the LT convenience library for ORTE.
* Wrapper compilers now only -l one library (e.g., ortecc only does
-lopen-ret, and mpicc only does -lmpi).
This commit was SVN r22691.
discussion on the users list (see
http://www.open-mpi.org/community/lists/users/2009/12/11526.php).
Many thanks to Kevin Buckley who did most of the coding work, and to
Aleksej Saushev for his extreme patience in waiting for me to review
and commit this stuff.
This commit was SVN r22640.
If file does not exist, check the directory it lives in...
Maybe used by caller, trying to open mmap() on NFS, Lustre or
Panasas (thanks Sam).
For now, this is used to warn about the usage of mmap on such FS.
Please note, that Ralph mentioned the orte_no_session_dir parameter.
The help message includes a reference to this.
Tested on NFS and Lustre on Linux on
smoky: mpirun --mca orte_tmpdir_base $HOME/tmp -np 2 ./mpi_stub
jaguar: mpirun ... --mca orte_tmpdir_base /tmp/work/$USER ...
Fixes trac:1354
This should cmr:v1.5 once it has soaked and is shown to work on
Solaris
This commit was SVN r22604.
The following Trac tickets were found above:
Ticket 1354 --> https://svn.open-mpi.org/trac/ompi/ticket/1354
anything for non-MPI apps. Oops! (But before you freak out, gentle
reader, note that mpi_paffinity_alone for MPI apps still worked fine)
When we made the switchover somewhere in the 1.3 series to have the
orted's do processor binding, then stuff like:
mpirun --mca mpi_paffinity_alone 1 hostname
should have bound hostname to processor 0. But it didn't because of a
subtle startup ordering issue: the MCA param registration for
opal_paffinity_alone was in the paffinity base (vs. being in
opal/runtime/opal_params.c), but it didn't actually get registered
until after the global variable opal_paffinity_alone was checked to
see if we wanted old-style affinity bindings. Oops.
However, for MPI apps, even though the orted didn't do the binding,
ompi_mpi_init() would notice that opal_paffinity_alone was set, yet
the process didn't seem to be bound. So the MPI process would bind
itself (this was done to support the running-without-orteds
scenarios). Hence, MPI apps still obeyed mpi_paffinity_alone
semantics.
But note that the error described above caused the new mpirun switch
--report-bindings to not work with mpi_paffinity_alone=1, meaning that
the orted would not report the bindings when mpi_paffinity_alone was
set to 1 (it ''did'' correctly report bindings if you used
--bind-to-core or one of the other binding options).
This commit separates out the paffinity base MCA param registration
into a small function that can be called at the Right place during the
startup sequence.
This commit was SVN r22602.
Not having this check was causing distcheck errors on the OMPI
tarball-build machine because it's still a 32-bit-default machine, so
the evutil.c code was failing some #if conditionals (since it didn't
think it had strtoll available).
This commit was SVN r22577.
finding symbol pthread_atfork, e.g. cxx-test-suite.
Fixes trac:2088
cmr:v1.5:reviewer=jsquyres
This commit was SVN r22542.
The following Trac tickets were found above:
Ticket 2088 --> https://svn.open-mpi.org/trac/ompi/ticket/2088
* Don't build the pstat component if all defines needed aren't there.
* Update platform file to work better
* Work around two places that depended on modex being operational
This commit was SVN r22536.
after the compiler argv tokens.
Not closing #2201 yet; there's still discussion on that ticket about
whether we want to do more or not.
Refs trac:2201
cmr:v1.4.2
cmr:v1.5
This commit was SVN r22513.
The following Trac tickets were found above:
Ticket 2201 --> https://svn.open-mpi.org/trac/ompi/ticket/2201
Originally the patch was to improve the error message, but when digging into the code I found a subtle bug. If the daemon does not tell the HNP what CRS component it used, then the HNP tries to figure it out from the metadata (this is an uncommon case). The path the HNP used was not complete, so it was unable to find the metadata information. This patch fixes this by adding the 'snapshot_reference' to the 'snapshot_location' which completes the path for this search.
cmr:v1.4 (needs a custom patch)
cmr:v1.5
This commit was SVN r22479.
The following Trac tickets were found above:
Ticket 2190 --> https://svn.open-mpi.org/trac/ompi/ticket/2190
In CMake 2.6 and earlier, this function add dependencies for targets and also link the target libraries automatically, but in CMake 2.8,this behavior has been changed, i.e. it will only add the dependencies but no link, which will cause linking errors at compilation time.
This commit was SVN r22405.
party/"vendor" import, the changes are actually far smaller than the
size of this changeset implies. Here's a list of the changes:
* Update the AMD license header in plpa_map.c to be less restrictive
(see https://svn.open-mpi.org/trac/plpa/changeset/262 for details)
-- '''this is the most/only important change of this update.''' No
code is changed by this; only removing a clase from a license
header in plpa_map.c.
* Changes to the generated {{{configure}}}, {{{config.guess}}}, and
{{{config.sub}}} scripts (which aren't used by OMPI).
* soname version tracking changes (which also aren't used by OMPI;
they're only used when PLPA is built/installed in "standalone"
mode).
* Update the "get version" m4 (which was stolen from OMPI's m4 to
begin with, and is only used during OMPI's autogen.sh step).
* Update various PLPA version numbers to 1.3.2.
* Bug fix in plpa-taskset (which is not built in the OMPI PLPA build).
This commit was SVN r22367.
to Eugene, Jeff, and Briand for the help. This patch is supposed to
fix several outstanding issues, notably the one on tickets #2043.
This commit was SVN r22324.
:-)
Okay, cleanup the prior commit so that the default component search path shows in ompi_info, and remains available in component_find.
This commit was SVN r22278.
"my_perfect_path":SYSTEM_DEFAULT:USER_DEFAULT
and OPAL will substitute its internally derived values for the defaults (instead of forcing the user to figure them out).
This commit was SVN r22272.
friends also receive &argc and &argv (George asked Jeff to Ralph to
review before committing). The thought is that passing argv and argc
to opal/orte_init be useful to other projects outside of OMPI that are
using OPAL and/or ORTE (especially in conjunction with some other
bootstrapping code where it is helpful to modify argv). It's such a
small thing that it's easy to apply here to make others' lives a
little easier.
Ask George for more details; I'm just the messenger. :-)
Judging by the copyrights on this patch, it's been around for a
while. :-)
This commit was SVN r22260.
Add orte configuration option to control the use of the framework in the system. Although the code will build, it will not be active unless configured with --enable-bootstrap.
If bootstrap is enabled and the new opal_sysinfo framework can successfully determine the cpu model, pass that info to the application as an MCA param to support some work at Sun.
Also, have daemons report back the resources they find to guide process mapping in bootstrap operations (i.e., where the daemon starts at node boot as opposed to being launched at application start).
Adjust some platform files to enable these capabilities.
This commit was SVN r22244.
PARAM_WINDOWS_FILES is a mistake or not). Fixes trac:2079.
This commit was SVN r22171.
The following Trac tickets were found above:
Ticket 2079 --> https://svn.open-mpi.org/trac/ompi/ticket/2079
pass that on to callers of opal_cmd_line_make_opt_mca().
Thanks to Thomas Naughton III.
- Additionally, cmd-line parameters passed in table to opal_cmd_line_create()
may be wrong (e.g. OPAL_ERR_BAD_PARAM), which may be missed in the
loop.
This commit was SVN r22153.
Continue the reorganization of the configure system. Move files from the main config directory to their appropriate level-specific config directories. Modify the configure system to correctly handle compiler detection, test, and setup so that all things pertaining to opal and orte are done at the lower level, with the ompi configure system only looking at mpi-specific options.
Ensure the wrapper compilers for orte and ompi only get built when appropriate. Add support for c++ to the orte wrapper compilers, both script and non-script versions.
This commit was SVN r22138.
Re-enable "./autogen.sh -no-ompi" again. If you -no-ompi, the entire OMPI
configury is skipped and the entire ompi/ subtree is not built. There's
some simple m4-isms that prune out the relevant parts.
I added ompi/config/, orte/config/, and opal/config/ directories. I moved a
bunch of m4 files from the top-level config/ dir into ompi/config/, and a few
into orte/config/.
Note that all 3 <project>/config directories have a config_files.m4 file. This
file contains the AC_CONFIG_FILES list for that project. The AC_CONFIG_FILES
call cannot be in an AC_DEFUN macro and conditionally called -- if it is
included at all, Autoconf will process it. Hence, these config_files.m4 files
don't AC_DEFUN -- they just have AC_CONFIG_FILES. m4_ifdef() is used to
conditionally include the files or not.
I moved a bunch of obvious OMPI-only m4 files from config/ to ompi/config/,
but I'm sure that there's more that could go. A ticket will be filed with
thoughts on future work in this area.
This commit was SVN r22113.
'.', we should still find the executable - it is in a directory beneath us.
In other words, if someone gives us "foo/bar" instead of "./foo/bar", we should still be able to find bar
This commit was SVN r22110.
posix_memalign() will either return 0 or not, indicating success. And
if posix_memalign() fails, it's not always going to be due to
out-of-memory -- just return ERR_IN_ERRNO.
This commit was SVN r22070.
MAP_PRIVATE. We didn't catch this because we checked for a NULL
return, not a -1 return. Doh! Thanks again to Julian Seward for
continuing to track this down.
This commit was SVN r22062.
opposite of MAKE_MEM_DEFINED. Also add in a call to NOACCESS to
(mostly) reverse the effects of MAKE_MEM_DEFINED (technically, page 0
was accessible before this, even though it's a Bad Idea to access it).
This commit was SVN r22056.
This commit does a bunch of things:
* Address all remaining code review items from CMR #2023:
* Defer mmap setup to be lazy; only set it up the first time we
invoke a collective. In this way, we don't penalize apps that
make lots of communicators but don't invoke collectives on them
(per #2027).
* Remove the extra assignments of mca_coll_sm_one (fixing a
convertor count setup that was the real problem).
* Remove another extra/unnecessary assignment.
* Increase libevent polling frequency when using the RML to
bootstrap mmap'ed memory.
* Fix a minor procs-related memory leak in btl_sm.
* Commit a datatype fix that George and I discovered along the way to
fixing the coll sm.
* Improve error messages when mmap fails, potentially trying to
de-alloc any allocated memory when that happens.
* Fix a previously-unnoticed confusion between extent and true_extent
in coll sm reduce.
This commit was SVN r22049.
The following Trac tickets were found above:
Ticket 2023 --> https://svn.open-mpi.org/trac/ompi/ticket/2023
This commit looks larger than it really is since it includes a fair amount of code cleanup.
The SIGSTOP/SIGCONT+checkpointing work uses some of the functionality in r20391. Basic use case below (note that the checkpoint generated is useable as usual if the stopped application is terminated).
{{{
shell 1) mpirun -np 2 -am ft-enable-cr my-app
... running ...
shell 2) ompi-checkpoint --stop -v MPIRUN_PID
[localhost:001300] [ 0.00 / 0.20] Requested - ...
[localhost:001300] [ 0.00 / 0.20] Pending - ...
[localhost:001300] [ 0.01 / 0.21] Running - ...
[localhost:001300] [ 1.01 / 1.22] Stopped - ompi_global_snapshot_1234.ckpt
Snapshot Ref.: 0 ompi_global_snapshot_1234.ckpt
shell 2) killall -CONT mpirun
... Application Continues execution in shell 1 ...
}}}
Other items in this commit are mostly cleanup that has been sitting off-trunk for too long:
* Add a new {{{opal_crs_base_ckpt_options_t}}} type that encapsulates the various options that could be passed to the CRS. Currently only TERM and STOP, but this makes adding others ''much'' easier.
* Eliminate ORTE_SNAPC_CKPT_STATE_PENDING_TERM, since it served a redundant purpose with the new options type.
* Lay some basic ground work for some future features.
This commit was SVN r21995.
The following SVN revision numbers were found above:
r20391 --> open-mpi/ompi@0704b98668
masks between the mask argument and a local PLPA mask. There were three
problems:
1) The "get" function computed the number of bits as sizeof(mask),
which is the size of the pointer to the mask rather than the mask
itself. So, only 4 bits were copied with m32 and 8 bits with m64.
There are actually 1024 bits.
2) The "get" and "set" functions both copied a number of bits computed
from the sizeof() mask, but sizeof() reports the number of bytes.
We have to multiply by 8 to get the number of bits.
3) These two functions check to make sure tha the mask argument is not
bigger than the PLPA mask. But, the set function copies a number
of bits in the PLPA mask, which is conceivably greater than the
number of bits in the mask argument. So, accesses to the mask
argument may overrun that argument.
Problems 1 and 2 meant that one would encounter errors when the number of
cores exceeded 4 (with -m32) or 8 (with -m64). Problem 3 probably caused
no errors.
This commit was SVN r21993.
don't set the ref count to 1, it has been already set by the call to OBJ_NEW
when the type was allocated. This fixes ticket #2014.
This commit was SVN r21976.
The new options work by adding an ":if-avail" qualifier to the "bind-to-socket" and "bind-to-core" MCA params. If the system does not support this capability, the job will launch anyway. Without the qualifier, the job will abort with an error message indicating that the required functionality is not supported on this system.
This commit was SVN r21975.
As noted in http://www.open-mpi.org/community/lists/devel/2009/08/6741.php,
we do not correctly free a dupped predefined datatype.
The fix is a bit more involving. See ticket for details.
Tested with ibm tests and mpi_test_suite (though there's two "old" failures
zero5.c and zero6.c)
Thanks to Lisandro Dalcin for bringing this up.
This commit was SVN r21929.
The following Trac tickets were found above:
Ticket 2014 --> https://svn.open-mpi.org/trac/ompi/ticket/2014
For some historical reasons, we didn't use select() for the Windows events. Now it could be merged back to have a better performance on Windows.
This commit was SVN r21899.
Due to a typo (probably cut/paste error) the CFLAGS/CPPFLAGS/LDFLAGS/LIBS arguments were not propogated to the BLCR component.
This changes a few {{{crs_blcr_check_}}} to {{{crs_blcr_save}}}, which they should have been all along.
This needs to be applied to v1.3 as well :/
This commit was SVN r21860.
#if defined (c_plusplus)
defined (__cplusplus)
followed by
extern "C" {
and the closing counterpart by BEGIN_C_DECLS and END_C_DECLS.
Notable exceptions are:
- opal/include/opal_config_bottom.h:
This is our generated code, that itself defines BEGIN_C_DECL and
END_C_DECL
- ompi/mpi/cxx/mpicxx.h:
Here we do not include opal_config_bottom.h:
- Belongs to external code:
opal/mca/backtrace/darwin/MoreBacktrace/MoreDebugging/MoreBacktrace.c
opal/mca/backtrace/darwin/MoreBacktrace/MoreDebugging/MoreBacktrace.h
- opal/include/opal/prefetch.h:
Has C++ specific macros that are protected:
- Had #if ... } #endif _and_ END_C_DECLS (aka end up with 2x
END_C_DECLS)
ompi/mca/btl/openib/btl_openib.h
- opal/event/event.h has #ifdef __cplusplus as BEGIN_C_DECLS...
- opal/win32/ompi_process.h: had extern "C"\n {...
opal/win32/ompi_process.h: dito
- ompi/mca/btl/pcie/btl_pcie_lex.l: needed to add *_C_DECLS
ompi/mpi/f90/test/align_c.c: dito
- ompi/debuggers/msgq_interface.h: used #ifdef __cplusplus
- ompi/mpi/f90/xml/common-C.xsl: Amend
Tested on linux using --with-openib and --with-mx
The following do not contain either opal_config.h, orte_config.h or
ompi_config.h
(but possibly other header files, that include one of the above):
ompi/mca/bml/r2/bml_r2_ft.h
ompi/mca/btl/gm/btl_gm_endpoint.h
ompi/mca/btl/gm/btl_gm_proc.h
ompi/mca/btl/mx/btl_mx_endpoint.h
ompi/mca/btl/ofud/btl_ofud_endpoint.h
ompi/mca/btl/ofud/btl_ofud_frag.h
ompi/mca/btl/ofud/btl_ofud_proc.h
ompi/mca/btl/openib/btl_openib_mca.h
ompi/mca/btl/portals/btl_portals_endpoint.h
ompi/mca/btl/portals/btl_portals_frag.h
ompi/mca/btl/sctp/btl_sctp_endpoint.h
ompi/mca/btl/sctp/btl_sctp_proc.h
ompi/mca/btl/tcp/btl_tcp_endpoint.h
ompi/mca/btl/tcp/btl_tcp_ft.h
ompi/mca/btl/tcp/btl_tcp_proc.h
ompi/mca/btl/template/btl_template_endpoint.h
ompi/mca/btl/template/btl_template_proc.h
ompi/mca/btl/udapl/btl_udapl_eager_rdma.h
ompi/mca/btl/udapl/btl_udapl_endpoint.h
ompi/mca/btl/udapl/btl_udapl_mca.h
ompi/mca/btl/udapl/btl_udapl_proc.h
ompi/mca/mtl/mx/mtl_mx_endpoint.h
ompi/mca/mtl/mx/mtl_mx.h
ompi/mca/mtl/psm/mtl_psm_endpoint.h
ompi/mca/mtl/psm/mtl_psm.h
ompi/mca/pml/cm/pml_cm_component.h
ompi/mca/pml/csum/pml_csum_comm.h
ompi/mca/pml/dr/pml_dr_comm.h
ompi/mca/pml/dr/pml_dr_component.h
ompi/mca/pml/dr/pml_dr_endpoint.h
ompi/mca/pml/dr/pml_dr_recvfrag.h
ompi/mca/pml/example/pml_example.h
ompi/mca/pml/ob1/pml_ob1_comm.h
ompi/mca/pml/ob1/pml_ob1_component.h
ompi/mca/pml/ob1/pml_ob1_endpoint.h
ompi/mca/pml/ob1/pml_ob1_rdmafrag.h
ompi/mca/pml/ob1/pml_ob1_recvfrag.h
ompi/mca/pml/v/pml_v_output.h
opal/include/opal/prefetch.h
opal/mca/timer/aix/timer_aix.h
opal/util/qsort.h
test/support/components.h
This commit was SVN r21855.
The following SVN revision numbers were found above:
r2 --> open-mpi/ompi@58fdc18855
- add a cmake module for searching libltdl libraries and headers
- a configure option to enable DSO build, default OFF.
- update a few source files for including correct header
and loading correct mca libraries path/suffix.
This commit was SVN r21804.
support for _Complex is disabled until we figure out the correct
black magic. So instead of using this nice C99 feature, we use the
a strcture with a double type, the same approach that worked pretty
well for the last couple of years.
Switching from one mode to the other is done using the
OPAL_USE_[FLOAT|DOUBLE|LONG_DOUBLE]__COMPLEX macros defined in
opal_datatype_internal.h at line 442.
This commit was SVN r21800.
Adds several new mpirun options:
* -bysocket - assign ranks on a node by socket. Effectively load balances the procs assigned to a node across the available sockets. Note that ranks can still be bound to a specific core within the socket, or to the entire socket - the mapping is independent of the binding.
* -bind-to-socket - bind each rank to all the cores on the socket to which they are assigned.
* -bind-to-core - currently the default behavior (maintained from prior default)
* -npersocket N - launch N procs for every socket on a node. Note that this implies we know how many sockets are on a node. Mpirun will determine its local values. These can be overridden by provided values, either via MCA param or in a hostfile
Similar features/options are provided at the board level for multi-board nodes.
Documentation to follow...
This commit was SVN r21791.
