ports/openmpi
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Gilles Gouaillardet
2c94a3a6f3 coll/libnbc: fix race condition with multi threaded apps 
protect the mca_coll_libnbc_component.active_requests list with
the new mca_coll_libnbc_component.lock mutex.

Thanks Jie Hu for the report

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-21 10:21:47 +09:00
Gilles Gouaillardet
19bdd1d626 oshmem/memheap: initialize common symbol mca_memheap_base_map 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-21 09:32:27 +09:00
Ralph Castain
8ecb240955 Use quiet print for debug 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-11-19 11:47:27 -08:00
Ralph Castain
14b4698890 Fix executable mode 2016-11-19 11:44:19 -08:00
Ralph Castain
fb644abd1e Add a couple of helper tools to prepare git commits by removing all trailing blank lines, and replacing tabs with indents. These tools default to looking only at modified files, but can also be used to scan the entire directory tree via the --all option. 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-11-19 11:44:19 -08:00
Howard Pritchard
3da7f02724 Merge pull request #2435 from jijo733/error-correction 
error correction to the MPI_file operations thread safety lock
 2016-11-19 09:24:48 -07:00
rhc54
4cf1c444cb Merge pull request #2440 from rhc54/topic/ofi 
Update OFI/rml component - still .opal_ignore'd
 2016-11-18 19:37:23 -07:00
Ralph Castain
eb67c2fd44 Update OFI/rml component - still .opal_ignore'd 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-11-18 14:54:26 -08:00
rhc54
ae6884804e Merge pull request #2438 from rhc54/topic/dbgr 
Bring the v2.0.x debugger patch up to the master branch
 2016-11-18 15:42:46 -07:00
Howard Pritchard
44f4663d0d Merge pull request #2432 from hppritcha/topic/fix_info_etc_w_alps 
pmix/cray: set some envars for MPI_INFO_ENV object
 2016-11-18 14:23:53 -07:00
Ralph Castain
9c6c2fa61d Bring the v2.0.x debugger patch up to the master branch 
Ensure the personality gets set as specified by user, or defaults to
"ompi"

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-11-18 12:45:45 -08:00
Jijo Varghese
25e138ea1d error correction to the MPI_file operations thread safety lock 
Signed-off-by: Jijo Varghese <jijo733@gmail.com>
 2016-11-17 08:18:49 -05:00
Howard Pritchard
de3de131af pmix/cray: set some envars for MPI_INFO_ENV object 
Enhance the cray pmix component to set some OMPI internal
env. variables used to set some key/value pairs
on the MPI_INFO_ENV object.  This allows more of the
ompi-tests ibm unit tests to pass when using aprun/srun
direct launch and Cray PMI.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2016-11-16 17:37:52 -06:00
Joshua Ladd
184148d26a Merge pull request #2431 from jladd-mlnx/topic/add_devie_cx5 
Add the ConnectX-5 device ID to openib BTL.
 2016-11-16 17:30:55 -05:00
Joshua Ladd
4907085c6f Add the ConnectX-5 device ID to openib BTL. 
Signed-off-by: Joshua Ladd <jladd.mlnx@gmail.com>
 2016-11-16 21:42:37 +02:00
Gilles Gouaillardet
bd364d29f7 osc/sm: plug an other memory leak in ompi_osc_sm_free 
Fixes open-mpi/ompi@f1b473ee63

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-14 23:19:07 -07:00
Gilles Gouaillardet
f1b473ee63 osc/sm: plug a memory leak in ompi_osc_sm_free 
Thanks Joseph Schuchart for the report.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-14 22:22:43 -07:00
Gilles Gouaillardet
8ef538adeb Merge pull request #2398 from bosilca/topic/tcp_endpoints_mutex 
Protect the tcp_endpoints list from concurrent accesses.
 2016-11-14 22:13:29 -07:00
Joshua Ladd
9a79da729f Merge pull request #2354 from alex-mikheev/topic/oshmem_mkey_cache 
ikrit spml cleanup, mkey cache and assorted bug fixes
 2016-11-14 17:22:13 -05:00
Josh Hursey
bcc8230501 Merge pull request #2410 from jjhursey/topic/fix-dist-graph-coll 
topo/base: Fix module reference in collective call
 2016-11-14 14:29:00 -06:00
Howard Pritchard
fb5ccd3618 Merge pull request #2404 from osvegis/topic/java_paper 
Update java paper reference.
 2016-11-14 11:35:45 -07:00
Joshua Hursey
5a8b2f7431 topo/base: Fix module reference in collective call 
Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
 2016-11-14 11:34:54 -06:00
Jeff Squyres
8d2c98e616 Merge pull request #2408 from hppritcha/manpage_typo 
fix minor typo in MPI_Comm_connect man page
 2016-11-14 09:38:38 -07:00
Howard Pritchard
3923bf8151 fix minor type in MPI_Comm_connect man page 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2016-11-14 05:52:45 -07:00
Gilles Gouaillardet
fc776e3fa5 coll: code cleanup 
- instead of coll_base_comm_get_reqs(2) for irecv/isend, use only
   one request allocated in the stack and do a irecv/send

 - instead of ompi_request_wait_all(2), simpy ompi_request_wait

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-13 22:35:33 -07:00
Gilles Gouaillardet
99d30353af coll: Don't allocate space for zero requests 
Refs #2402

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-13 22:20:58 -07:00
Oscar Vega-Gisbert
891272f556 Update java paper reference. 
Signed-off-by: Oscar Vega-Gisbert
 2016-11-13 22:05:18 +01:00
George Bosilca
725277bc26 Don't allocate space for the requests if the 
underlying topology has no neighbors.

This commit fixes issue #2402.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
 2016-11-12 18:01:09 -05:00
Howard Pritchard
aaf95c0713 Merge pull request #2403 from hppritcha/topic/fix_pmix_typoe 
pmix: fix a typo in a help file
 2016-11-12 14:14:28 -07:00
Howard Pritchard
703b464c03 pmix: fix a typo in a help file 
Fixes #2391

Thanks to @njoly for reporting

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2016-11-12 11:49:15 -07:00
George Bosilca
d0dddef53d
Protect the tcp_endpoints list from concurrent accesses. 
Thanks Gilles for your help.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
 2016-11-11 00:06:03 -05:00
Alex Mikheev
864904e8ab
oshmem: ucx: check status only if configured --with-oshmem-param-check 
Current standard says that behaviour in the case of error is undefined

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-10 11:29:03 +02:00
Alex Mikheev
48a7a0bbb9
oshmem: lock: call opal_progress only when busy waiting 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-10 11:27:24 +02:00
Alex Mikheev
bf61961f8b
oshmem: code review fixes 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-08 15:11:59 +02:00
Alex Mikheev
f133d9b6c8
oshmem: fixes comiplation errors in sshmem 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-08 15:11:07 +02:00
Gilles Gouaillardet
a49422fe84 btl/tcp: get rid of the MCA_BTL_TCP_SUPPORT_PROGRESS_THREAD macro 
since pthreads are now mandatory, the MCA_BTL_TCP_SUPPORT_PROGRESS_THREAD
is always true and hence can be safely removed

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-08 14:00:05 +09:00
Gilles Gouaillardet
11dc86f26b cleanup: always #include <pthread.h> 
pthreads are now mandatory, so there is no more need to

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-08 13:07:45 +09:00
Joshua Ladd
1bf238efb8 Merge pull request #2377 from alex-mikheev/topic/oshmem_f_13_fix 
oshmem: removes fortran shmem_put() because v1.3 does not have it
 2016-11-07 15:22:43 -05:00
Nysal Jan K A
3126a984a8 Merge pull request #2374 from AboorvaDevarajan/topic/powerpc_conf_update 
powerpc: Add support for powerpcle in timer/pstat.
 2016-11-07 18:03:50 +05:30
Alex Mikheev
18301429a0 oshmem: removes fortran shmem_put() because v1.3 does not have it 
picked from the 64a8f64afd351e37e7d80a080e495c082b56517c

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-07 13:47:57 +02:00
Aboorva Devarajan
fb8e074583 powerpc: Add support for powerpcle in timer/pstat. 
Signed-off-by: Aboorva Devarajan <abodevar@in.ibm.com>
 2016-11-07 02:35:44 -05:00
Gilles Gouaillardet
7a2894f1e0 event/libevent2022: cleanup dependencies to the embedded libevent lib 
configury force event/libevent2022 to be built as a static module,
so simplify Makefile.am

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-07 14:57:52 +09:00
Gilles Gouaillardet
023d18abae pml/ob1: mca_pml_ob1_recv must have memchecker mark the buffer as defined upon success 
this is generally done in mca_pml_ob1_recv_request_free(), but this is not invoked
in via mca_pml_ob1_recv(), so do it manually

Thanks Yvan Fournier for the report

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-07 13:10:15 +09:00
Alex Mikheev
ff5095e533 OSHMEM: adds support for mkey caching by spml 
It improves cpu cache hit ratio.

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-06 11:56:43 +02:00
Alex Mikheev
5c2f807ef8 OSHMEM: fixes verbosity log level cal 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-06 11:56:42 +02:00
Alex Mikheev
7caa736533 OSHMEM: fixes potential deadlock in shmem_lock() 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-06 11:56:42 +02:00
Alex Mikheev
defcc3ddc1 OSHMEM: spml ikrit: get/put request cleanup 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-06 11:56:41 +02:00
Alex Mikheev
61bd59a369 OSHMEM: fixes addr_acessible() 
check every possible transport

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-06 11:56:41 +02:00
Alex Mikheev
23c3dc8345 OSHMEM: mxm: optimize mxm_peer layout. 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-06 11:56:40 +02:00
Alex Mikheev
df74d549dc OSHMEM: spml ikrit: changes mxm_peers layout 
use single array instead of array of pointers

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-06 11:56:39 +02:00