ports/openmpi
ports/openmpi
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Gilles Gouaillardet
45336d0bea libnbc: fix iallgather[v] 
In order to optimize for MPI_IN_PLACE, data is sent from the receive buffer.
consequently, it should be sent with the receive type and count.

Thanks Josh Hursey for the report and test case

Refs open-mpi/ompi#2256
 2016-10-21 10:24:25 +09:00
rhc54
2d94845f90 Merge pull request #2257 from rhc54/topic/pmixext3 
Cleanup external PMIx v3 component for copy/paste errors - component and module require unique names
 2016-10-20 12:04:38 -05:00
Ralph Castain
2f966bf3bf Cleanup external PMIx v3 component for copy/paste errors - component and module require unique names 2016-10-20 09:11:46 -07:00
Joshua Ladd
9538f4d715 Merge pull request #2255 from alex-mikheev/topic/oshmem_v1.3_cpr_updates 
OSHMEM: updates copyrights in fortran fetch/set
 2016-10-20 09:06:44 -04:00
Alex Mikheev
6c798fe08d OSHMEM: updates copyrights in fortran fetch/set 
(cherry picked from commit f5297ccdb277208a96aaffd72a6454afe712fdb4)
 2016-10-20 15:09:27 +03:00
rhc54
4237f1192e Merge pull request #2225 from ggouaillardet/topic/port_in_hostfile 
add support for port=<port> in a hostfile for plm/rsh
 2016-10-19 10:26:01 -05:00
Gilles Gouaillardet
1846c2d8ad plm/rsh: use an alternate port if the ORTE_NODE_PORT attribute is set 2016-10-19 16:18:52 +09:00
Gilles Gouaillardet
40424c9d0f orte/util/hostfile: add the port=<port> option 
add the option to pass an alternate port to plm
for example
node0 port=2222
directs the plm (via the ORTE_NODE_PORT) attribute to use
the non default port 2222 (e.g. ssh -p 2222 node0 ...)
 2016-10-19 15:04:01 +09:00
Gilles Gouaillardet
73ea87800b orte/util: add the ORTE_NODE_PORT attribute 
this can be used to direct the plm component to use an alternate port
(e.g. ssh -p 2222 ...)
 2016-10-19 15:04:01 +09:00
Gilles Gouaillardet
e78fcc4db9 coll/base: fix ompi_coll_base_{gather,scatter}_intra_binomial 
receive type is only relevant for root with gather,
send type is only relevant for root with scatter,
so do not access these types on a non root task
 2016-10-19 14:05:22 +09:00
Gilles Gouaillardet
cb76d93b4e ompi_wrapper_script: fix $extra_ldflags 
use @OMPI_PKG_CONFIG_LDFLAGS@ instead of @OMPI_WRAPPER_EXTRA_LDFLAGS@
so @{libdir} is substitued with ${libdir}

Thanks Manesh Nanavalla for the report
 2016-10-19 09:57:55 +09:00
rhc54
2826da727a Merge pull request #2244 from rhc54/topic/pmixext 
Create PMIx v3 external component
 2016-10-18 16:46:18 -05:00
Ralph Castain
8113a8d1b0 Now that we are hiding symbols in the internal PMIx component, we cannot reuse that component for integration to the external PMIx master as the symbols don't match. So create a new "ext3x" component and copy the PMIx v3 integration over there. 
Also, remove a couple of build-product files from the pmix3x component.
 2016-10-18 13:15:32 -07:00
rhc54
1884aa68e5 Merge pull request #2240 from rhc54/topic/badapp 
Properly report failure to launch when someone mis-types the name of the application
 2016-10-18 13:08:06 -05:00
Ralph Castain
16540c7422 Properly report failure to launch when someone mis-types the name of the application 
Fixes #2233
 2016-10-18 10:09:30 -07:00
Ralph Castain
7be607582e ORTE applications need to commit any modex send's prior to calling fence 2016-10-18 09:22:56 -07:00
Ralph Castain
7910aa23eb Set lazy_wait_in_init "on" by default for test in master 2016-10-18 08:47:04 -07:00
rhc54
0e5d46ae7a Merge pull request #2237 from rhc54/topic/thread 
Ensure the PMIx progress thread is stopped prior to tearing anything down.
 2016-10-18 10:38:03 -05:00
Ralph Castain
50c9f3de55 Ensure the PMIx progress thread is stopped prior to tearing anything down. Thanks to Gilles for spotting this error! 2016-10-18 00:27:52 -07:00
rhc54
a659cb2fda Merge pull request #2229 from rhc54/topic/dvm 
Pickup the npernode and npersocket options and include them in the job object
 2016-10-17 15:27:21 -05:00
Ralph Castain
57114a09ae Pickup the npernode and npersocket options and include them in the job object 2016-10-17 12:26:21 -07:00
Gilles Gouaillardet
1e3191115b Merge pull request #2172 from ggouaillardet/topic/ialltoall_in_place 
support MPI_IN_PLACE in MPI_Ialltoall*
 2016-10-17 17:00:47 +09:00
Gilles Gouaillardet
bd1b6fe661 rml/oob: add a missing include file 2016-10-16 10:25:00 +09:00
Gilles Gouaillardet
c530b0a07c mpi/cxx: remove duplicate and now useless typedef 2016-10-15 14:30:00 +09:00
Ralph Castain
50bb0ded70 Update the PMIx nightly scripts to generalize locations 2016-10-14 08:40:05 -07:00
Joshua Ladd
64a15188bd Merge pull request #2199 from vspetrov/coll_hcoll_ialltoallv 
coll/hcoll: ialltoallv interface
 2016-10-14 07:59:23 -06:00
Gilles Gouaillardet
9389de4199 topo/treematch: fix displacements in mca_topo_treematch_dist_graph_create() 2016-10-14 17:16:49 +09:00
Gilles Gouaillardet
4e19cd51b1 hwloc/external: add a missing include file 2016-10-14 09:27:33 +09:00
rhc54
ef0610dd56 Merge pull request #2223 from rhc54/topic/pmixfix 
Repair event notification support and resync to PMIx master
 2016-10-13 19:26:44 -05:00
Ralph Castain
6f65d0a173 Repair event notification support. Cleanup the long-suffering "epoll: warning" coming out of libevent whenever a process abnormally terminated. 
Add changes to test program

Sync to PMIx master
 2016-10-13 16:27:39 -07:00
rhc54
952ea06f15 Merge pull request #2219 from ggouaillardet/topic/oob_vs_pmix_finalize 
ess: tear down pmix (if any) before oob
 2016-10-13 11:32:47 -05:00
Ralph Castain
6417f217e1 Turn PMIx dstore off by default as MTT was effectively broken 2016-10-13 08:14:51 -07:00
Joshua Ladd
b661307e6f Merge pull request #2218 from yosefe/topic/ucx-pml-spml-update 
ucx: adapt pml_ucx and spml_ucx to new UCX APIs
 2016-10-13 09:23:37 -04:00
Potnuri Bharat Teja
29f1aa836f btl/openib: remove unwanted ompi header inclusion in opal code. 
OMPI header cannot be included in OPAL source code, hence removed it.
Fixes: (740b636db) btl/openib: Disqualify rdmacm CPC if
MPI_THREAD_MULTIPLE.

Signed-off-by: Potnuri Bharat Teja <bharat@chelsio.com>
 2016-10-13 16:21:36 +05:30
Gilles Gouaillardet
958e29f929 osc/rdma: silence a warning 
declare a local variable volatile and silence CID 1372692
 2016-10-13 16:10:07 +09:00
Gilles Gouaillardet
451b9dc467 ess: tear down pmix (if any) before oob 2016-10-13 14:08:02 +09:00
Yossi Itigin
05ca466c6b ucx: adapt pml_ucx and spml_ucx to new UCX APIs 
- pass field_mask to ucp_init().
- use non-blocking disconnect.
- recv() with pre-allocated request.
- call opal_progress() from iprobe() and improbe().
- use shift pattern in connect/disconnect.
 2016-10-12 23:45:45 +03:00
Nathan Hjelm
1b01b6db4f Merge pull request #2213 from hjelmn/osc_rdma 
osc/rdma: fix warnings
 2016-10-12 13:13:27 -06:00
Nathan Hjelm
5c99d097ee Merge pull request #2214 from hjelmn/cxx_isolation 
mpi/cxx: fix warnings
 2016-10-12 13:04:30 -06:00
rhc54
4439d880fd Merge pull request #2211 from rhc54/topic/rml 
Some compilers apparently complain about this, so modify the typedef …
 2016-10-12 13:11:47 -05:00
Nathan Hjelm
ab0a005c95 mpi/cxx: fix warnings 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-10-12 11:30:36 -06:00
Nathan Hjelm
5b40fd267f Merge pull request #2204 from hjelmn/arm64 
asm/arm64: ensure instruction ordering on timer
 2016-10-12 11:22:28 -06:00
Nathan Hjelm
e8ef503bee osc/rdma: fix warnings 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-10-12 10:17:25 -06:00
Ralph Castain
fca1556787 Some compilers apparently complain about this, so modify the typedef statements 2016-10-12 08:44:03 -07:00
Nathan Hjelm
9a50ce6364 asm/arm64: ensure instruction ordering on timer 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-10-12 09:25:21 -06:00
Ralph Castain
b11c9574d4 Remove debug and update copyright 2016-10-11 23:28:16 -07:00
Ralph Castain
a2326e3ba0 Update the scaling test to properly use orterun for orte-dvm tests, and extend by adding params for async mpi init/finalize 2016-10-11 23:24:52 -07:00
Gilles Gouaillardet
974dd64293 ompi/errhandler: remove useless include file 
and avoid #includ'ing stuff that breaks C++ compilers
 2016-10-12 14:49:31 +09:00
Ralph Castain
8f05beb1ec Sync pmix/master@cb53105 2016-10-11 20:54:59 -07:00
rhc54
ad156e3e91 Merge pull request #2207 from rhc54/topic/pmixupdate 
Update PMIx support to latest PMIx master
 2016-10-11 18:57:11 -05:00