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5393 Коммитов

Автор SHA1 Сообщение Дата
bosilca
182a2db2a4
Merge pull request #6029 from ggouaillardet/topic/large_datatypes
opal/datatype: correctly handle large datatypes
2018-12-24 12:49:52 -05:00
Jeff Squyres
a30864c634 opal: fix compiler warning
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-12-23 12:10:23 -08:00
bosilca
f96305f96b
Merge pull request #6199 from aravindksg/opal-threads-fix
opal/sync: Fix assert during multi-threaded progress invocation
2018-12-20 13:27:07 -05:00
Nathan Hjelm
cf49957af6
Merge pull request #6207 from hjelmn/opal_cleanup
opal: fix common symbols introduced in opal cleanup
2018-12-19 15:39:39 -07:00
Jeff Squyres
9b88e60fc8 info_get: ensure to copy all requested characters
When querying an info value, copy out exactly as many characters as
the caller asked for -- do not artificially truncate the target just
to ensure that it is \0-terminated.

Specifically: do not use opal_string_copy() to copy info values,
because opal_string_copy() will guarantee to \0-terminate the target,
even if it means truncating the target.  E.g., if the caller calls
opal_info_get_nolock() with valuelen=5, opal_string_copy() will return
"1234\0" -- which is wrong.  This commit fixes the behavior to return
"12345".

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-12-19 13:01:45 -08:00
Nathan Hjelm
fd852c8f63 opal: fix common symbols introduced in opal cleanup
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-12-19 12:27:14 -07:00
Nathan Hjelm
4944508603
Merge pull request #6136 from hjelmn/opal_cleanup
opal: clean up init/finalize
2018-12-18 15:23:32 -07:00
Nathan Hjelm
0edfd328f8 opal: clean up init/finalize
This commit contains the following changes:

 - Remove the unused opal_test_init/opal_test_finalize
   functions. These functions are not used by anything in the code
   base or MTT. Tests use opal_init_util/opal_finalize_util instead.

 - Get rid of gotos in opal_init_util and opal_init. Replaced them
   with a cleaner solution.

 - Automatically register cleanup functions in init functions. The
   cleanup functions are executed in the reverse order of the
   initialization functions. The cleanup functions are run in
   opal_finalize_util() before tearing down the class system.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-12-18 14:37:04 -07:00
Ralph Castain
ece7696c2c Fix external PMIx v3 support
Don't erase the source files during "make clean"!

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-12-17 15:54:56 -08:00
Aravind Gopalakrishnan
2f3c5218ff opal/sync: Fix assert during multi-threaded progress invocation
PR #5241 provided an MCA variable to allow multi-threaded opal_progress.
However, it allowed to update the linked list even when multiple threads was
allowed to call opal_progress. This caused a scenario when a more recent thread
could complete it's progress and fail the assert(sync ==
wait_sync_list).

Allowing to update the linked list only for the case when the number of threads
exceeds the threshold fixes the problem.

Signed-off-by: Aravind Gopalakrishnan <Aravind.Gopalakrishnan@intel.com>
2018-12-17 12:14:27 -08:00
Gilles Gouaillardet
b89deeb1bb btl/uct: fix a typo in configure.m4
remove whitespace around '=' when setting btl_uct_LIBS

Thanks Ake Sandgren for reporting this

Refs. open-mpi/ompi#6173

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-12-11 14:23:53 +09:00
Gilles Gouaillardet
78aa6fdd1d btl/uct: fix a warning
Use the PRIsize_t macro to correctly print a size_t

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-12-07 16:16:35 +09:00
George Bosilca
88a693bf71 Add a test for very large data.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2018-12-06 13:30:58 +09:00
Gilles Gouaillardet
fbb5bb8860 opal/datatype: correctly handle large datatypes
Always use size_t (instead of converting to an uint32_t) in order to
correctly support large datatypes.

Thanks Ben Menadue for the initial bug report

Refs open-mpi/ompi#6016

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-12-06 13:30:58 +09:00
Nathan Hjelm
e07a64c52d btl/uct: fix some issues when using UCX over ugni
Though not a recommended configuration it is possible to use Open MPI
over UCX over uGNI. This configuration had some issues related to the
connection management and tl selection. This commit fixes those
issues.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-12-05 16:30:54 -07:00
Gilles Gouaillardet
fccb3e7514
Merge pull request #6137 from ggouaillardet/topic/ucx_warning
btl/openib: delay UCX warning to add_procs()
2018-12-05 11:50:10 +09:00
Yossi Itigin
83cca9d52a ucx: add owner.txt for components
Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
2018-12-01 17:14:03 +02:00
Gilles Gouaillardet
0a2ce58040 btl/openib: delay UCX warning to add_procs()
If UCX is available, then pml/ucx will be used instead of
pml/ob1 + btl/openib, so there is no need to warn about
btl/openib not supporting Infiniband.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-11-29 16:20:55 +09:00
Ralph Castain
f609542bbf Implement process set name support
Add the --pset option for app_contexts so the user can provide a string
name for each app_context. Use the new PMIx pset attribute to store the
names in the PMIx local storage for retrieval

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-11-27 11:07:58 -08:00
Josh Hursey
3339e2aa33
Merge pull request #5986 from jjhursey/vpid-unpack
Add OPAL_VPID to unpacking
2018-11-21 11:42:02 -06:00
KAWASHIMA Takahiro
cacd6f389c datatype: Remove #if HAVE_[TYPE] for C99 types
Now Open MPI requires a C99 compiler. Checking availability of
the following types is no more needed.

- `long long` (`signed` and `unsigned`)
- `long double`
- `float _Complex`
- `double _Complex`
- `long double _Complex`

Furthermore, the `#if HAVE_[TYPE]` style checking is not correct.
Availability of C types is checked by `AC_CHECK_TYPES` in `configure.ac`.
`AC_CHECK_TYPES` defines macro `HAVE_[TYPE]` as `1` in `opal_config.h`
if the `[TYPE]` is available. But it does not define `HAVE_[TYPE]`
(instead of defining as `0`) if it is not available. So even if we
need `HAVE_[TYPE]` checking, it should be `#if defined(HAVE_[TYPE])`.

I didn't remove `AC_CHECK_TYPES` for these types in `configure.ac`
since someone may use `HAVE_[TYPE]` macros somewhere.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-11-14 09:32:52 +09:00
Thananon Patinyasakdikul
3dc1629771
Merge pull request #5241 from thananon/opal_progress
Add MCA param for multithread opal_progress().
2018-11-09 12:30:07 -05:00
Gilles Gouaillardet
efe72d3d92
Merge pull request #6055 from ggouaillardet/topic/c11_atomics
Misc C11 atomics related fixes
2018-11-08 09:11:42 +09:00
Gilles Gouaillardet
07970f192a atomic/c11: fix include header path
simply #include "opal_stdint.h" in order to work with --devel-headers

Refs open-mpi/ompi#6053

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-11-07 13:23:28 +09:00
Thananon Patinyasakdikul
d9bd54c628 btl/ofi: fixed compiler warning on OSX.
This commit closes #6049

Signed-off-by: Thananon Patinyasakdikul <tpatinya@utk.edu>
2018-11-06 15:37:25 -05:00
Nathan Hjelm
30119ee339 opal/asm: work around possible gcc compiler bug
It seems in some cases (gcc older than v6.0.0) the __atomic_thread_fence is a
no-op with __ATOMIC_ACQUIRE. This appears to be the case with X86_64 so go
ahead and use __ATOMIC_SEQ_CST for the x86_64 read memory barrier. This should
not cause any performance issues as it is equivalent to the memory barrier
in the hand-written atomics.

References #6014

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-11-05 11:45:42 -07:00
Thananon Patinyasakdikul
4e23fedccb opal progress: Added MCA for multithreaded opal_progress.
This commit added MCA param `opal_max_thread_in_progress` to set the
number of threads allowed to do opal_progress concurrently. The default
value is 1.

Component with multithreaded design can benefit from this change to
parallelize their component progress function.

Signed-off-by: Thananon Patinyasakdikul <tpatinya@utk.edu>
2018-11-01 13:34:20 -04:00
Howard Pritchard
8126779a35 btl/openib: fix a problem with ib query
Under certain circumstances, ibv_exp_query_device was
returning an error due to uninitialized fields in the
extended attributes struct.

Fixes: #5810
Fixes: #5914

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-10-31 14:50:15 -06:00
Brian Barrett
a1e85b03aa btl tcp: Fix compile error in IPv6
In 457f058 I broke the TCP BTL with --enable-ipv6.  This patch
fixes the compile error, so IPv6 works again.

Fixed #5996

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
2018-10-30 12:31:04 -07:00
Joshua Hursey
a557c4130c Add OPAL_VPID to unpacking
* Needed to properly read PMIx job data like the following
   - `OPAL_PMIX_LOCALLDR`
   - `OPAL_PMIX_RANK`
   - `OPAL_PMIX_GLOBAL_RANK`
   - `OPAL_PMIX_APPLDR`
   - `OPAL_PMIX_APP_RANK`

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2018-10-29 14:31:47 -05:00
Gilles Gouaillardet
b205039205 event/external: fix version requirement
Only default to the external component if its version is
greater or equal than the internal libevent (2.0.22)

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-10-29 10:12:56 +09:00
Gilles Gouaillardet
35e77a286c event/external: misc configury fixes
- Always use the external component when configure'd with --with-libevent=external
 - Fix the external libevent library version detection
   by testing _EVENT_NUMERIC_VERSION and EVENT__NUMERIC_VERSION macros
 - Use the event2/event.h header (event.h is deprecated since libevent 2.0

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-10-29 10:12:56 +09:00
Aurelien Bouteiller
f2e6d7891e
Merge pull request #5975 from ICLDisco/export/pmix-fini-threadinterlock
Avoid a double lock interlock when calling pmix_finalize
2018-10-26 10:01:23 -04:00
Gilles Gouaillardet
b715dd2657 btl/uct: fix AC_CHECK_DECLS usage
AC_CHECK_DECLS take a comma separated list of macros/symbols,
so replace the whitespace separator with a comma.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-10-26 15:36:02 +09:00
Aurelien Bouteiller
50cf707f3f
Avoid a double lock interlock when calling pmix_finalize
Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>
2018-10-25 16:36:58 -04:00
Nathan Hjelm
7b34c9b3fe
Merge pull request #5958 from hjelmn/btl_uct_sync
btl/uct: update for UCT_CB_FLAG_SYNC removal
2018-10-22 23:17:27 -06:00
Yossi Itigin
4c442f2601
Merge pull request #5934 from hoopoepg/topic/suppressed-cov-warn-added-log-msg
COMMON/UCX: suppressed coverity warnings
2018-10-22 11:00:47 +03:00
Nathan Hjelm
1b37328ba8 btl/uct: update for UCT_CB_FLAG_SYNC removal
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2018-10-21 18:57:42 -06:00
bosilca
690024917d
Merge pull request #5938 from bwbarrett/bugfix/tcp-multi-address
Always use same IP address for module and modex
2018-10-21 09:19:43 -07:00
Sergey Oblomov
1099d5f023 COMMON/UCX: added error code to log output
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-10-21 11:37:25 +03:00
George Bosilca
dc972f0b92
Fix the PML monitoring.
The monitoring PML hides it's existence from the OMPI infrastructure by
removing itself from the list of PML loaded components, remaining hidden
until MPI_Finalize.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2018-10-18 00:29:23 -04:00
Brian Barrett
457f058e73 btl tcp: Simplify modex address selection
Simplify selection of the address to publish for a given BTL TCP
module in the module exchange code.  Rather than looping through
all IP addresses associated with a node, looking for one that
matches the kindex of a module, loop over the modules and
use the address stored in the module structure.  This also
happens to be the address that the source will use to bind()
in a connect() call, so this should eliminate any confusion
(read: bugs) when an interface has multiple IPs associated with
it.

Refs #5818

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
2018-10-18 02:23:21 +00:00
Howard Pritchard
7730db9982
Merge pull request #5937 from hppritcha/topic/remove_crs_components
remove some dead crs components
2018-10-17 16:06:36 -06:00
Jeff Squyres
c2608fb597
Merge pull request #5939 from jsquyres/pr/coverity-cid-1440332
opal/os_path: fix minor string overrun
2018-10-17 14:24:42 -07:00
Howard Pritchard
6564d3d217 remove some dead crs components
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-10-17 10:29:00 -06:00
Brian Barrett
4f19221af2 btl tcp: Simplify module address storage
Today, a btl tcp module is associated with exactly one IP
address (IPv4 or IPv6).  There's no need to reserve space
for both an IPv4 and IPv6 address in the module structure,
since the module will only be associated with one or the
other.

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
2018-10-17 16:21:17 +00:00
Jeff Squyres
290d1c0534 opal/os_path: fix minor string overrun
This is a follow on to 54ca3310ea to fix
a minor bug identified by Coverity.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-10-17 08:57:30 -07:00
Sergey Oblomov
df765595e3 COMMON/UCX: suppressed coverity warnings
- suppressed coverity warnings - added log messages on failed calls

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-10-17 16:11:03 +03:00
Brian Barrett
2acc4b7e7f btl tcp: Add workaround for "dropped connection" issue
Work around a race condition in the TCP BTL's proc setup code.
The Cisco MTT results have been failing on TCP tests due to a
"dropped connection" message some percentage of the time.
Some digging shows that the issue happens in a combination of
multiple NICs and multiple threads.  The race is detailed in
https://github.com/open-mpi/ompi/issues/3035#issuecomment-429500032.

This patch doesn't fix the race, but avoids it by forcing
the MPI layer to complete all calls to add_procs across the
entire job before any process leaves MPI_INIT.  It also
reduces the scalability of the TCP BTL by increasing start-up
time, but better than hanging.

The long term fix is to do all endpoint setup in the first
call to add_procs for a given remote proc, removing the
race.  THis patch is a work around until that patch can
be developed.

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
2018-10-16 18:33:30 -07:00
Nathan Hjelm
37a3f32e47
Merge pull request #5913 from hjelmn/uct_btl_fixes
btl/uct: fix deadlock in connection code
2018-10-16 19:11:54 -06:00