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Граф коммитов

5393 Коммитов

Автор SHA1 Сообщение Дата
Jeff Squyres
3970b06134 misc: passing a bool to va_start() is undefined
According to clang on MacOS, passing a bool parameter -- which
undergoes default parameter promotion -- to va_start() results in
undefined behavior.  So just change these params to int and avoid the
issue.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-09-15 06:04:13 -07:00
Jeff Squyres
8f2620d3af misc: compiler warning fixes
A variety of small compiler warning fixes.  The 2 PMIx fixes are
already committed upstream.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-09-15 06:04:13 -07:00
Nathan Hjelm
6363889cd0
Merge pull request #5696 from hjelmn/vader_5375
btl/vader: ensure that the send tag is always written last
2018-09-14 12:33:35 -06:00
Nathan Hjelm
1071d72130
Merge pull request #5445 from hjelmn/asm_type
Update opal to use C11 atomics if available
2018-09-14 12:32:56 -06:00
Nathan Hjelm
fe6528b0d5 opal/atomic: always use C11 atomics if available
This commit disables the use of both the builtin and hand-written
atomics if proper C11 atomic support is detected. This is the first
step towards requiring the availability of C11 atomics for the C
compiler used to build Open MPI.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-09-14 10:51:05 -06:00
Nathan Hjelm
000f9eed4d opal: add types for atomic variables
This commit updates the entire codebase to use specific opal types for
all atomic variables. This is a change from the prior atomic support
which required the use of the volatile keyword. This is the first step
towards implementing support for C11 atomics as that interface
requires the use of types declared with the _Atomic keyword.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-09-14 10:48:55 -06:00
Nathan Hjelm
850fbff441 btl/vader: ensure that the send tag is always written last
To ensure fast box entries are complete when processed by the
receiving process the tag must be written last. This includes a zero
header for the next fast box entry (in some cases). This commit fixes
two instances where the tag was written too early. In one case, on
32-bit systems it is possible for the tag part of the header to be
written before the size. The second instance is an ordering issue. The
zero header was being written after the fastbox header.

Fixes #5375, #5638

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-09-14 10:35:35 -06:00
Ralph Castain
7facb3f3e9 Pickup and deploy network-specific envars
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-09-13 09:24:19 -07:00
Ralph Castain
c7939aeebc Pickup some minor debugging changes
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-09-13 09:11:28 -07:00
Ralph Castain
466cad6cb2 Update master to PMIx v4
Retain ext3x for PMIx 3  compatibility
Get the blasted permissions correct on config files

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-09-13 08:24:17 -07:00
Ralph Castain
fb67b1703f
Merge pull request #5689 from rhc54/topic/psm2
Silence warning of unused function
2018-09-12 16:40:23 -07:00
Ralph Castain
853dc96c5d Silence warning of unused function
Requires protection for HAVE___CLEAR_CACHE

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-09-12 15:03:59 -07:00
Jeff Squyres
78c1469f93
Merge pull request #5682 from selvintxavier/brcm_hcas
Add support for different Broadcom HCAs
2018-09-12 11:59:21 -04:00
Selvin Xavier
a53a6f7650 Add support for different Broadcom HCAs
Adds device ids of different Broadcom adapters from
BCM57XXX and BCM58XXX family of HCAs.

Signed-off-by: Selvin Xavier <selvin.xavier@broadcom.com>
2018-09-12 02:22:34 -07:00
Ralph Castain
83ba589084 Silence warning
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-09-11 18:01:12 -07:00
Nathan Hjelm
9a514c6794
Merge pull request #5647 from hjelmn/clear_cache
patcher/base: improve instruction cache flush for aarch64
2018-09-10 15:43:35 -06:00
Jeff Squyres
a1b879d176
Merge pull request #5651 from jsquyres/pr/dont-let-openib-yell-about-no-nics
btl/openib: don't complain about no NICs
2018-09-07 15:00:24 -04:00
Howard Pritchard
dc02e54320
Merge pull request #5516 from thananon/ofi_send
btl/ofi: Added 2 sided communication support.
2018-09-06 18:39:23 -06:00
Jeff Squyres
098ec55e37 btl/openib: don't complain about no NICs
Since openib is on its long, slow way out the door, don't let it
complain about not being able to find any NICs at run time.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-09-06 11:26:58 -07:00
Nathan Hjelm
1cdbceb095 patcher/base: improve instruction cache flush for aarch64
This commit updates the patcher component to either use the
__clear_cache intrinsic or the correct assembly to flush the
instruction cache.

Fixes #5631

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-09-06 09:47:53 -06:00
Nathan Hjelm
5b9a24f13b
Merge pull request #5648 from hjelmn/btl_uct_fix
btl/uct: ad missing opal_mem_hooks_unregister_release call
2018-09-05 13:59:22 -06:00
Nathan Hjelm
36c206d2d6 btl/uct: add missing opal_mem_hooks_unregister_release call
This commit fixes a bug when using the UCT btl with the UCX memory
hooks disabled. We were misssing a call to
opal_mem_hooks_unregister_release to remove the btl memory hook
callback.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-09-05 13:01:45 -06:00
Jeff Squyres
4173ac6dd0 mca/base: enforce max string lengths
Ensure that the project, framework, component, and variable names are
lower than max lengths.  This is a follow-on to
992a8e8297, per discussion on
https://github.com/open-mpi/ompi/pull/5642.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-09-05 08:42:00 -07:00
George Bosilca
992a8e8297
Use less memory for the MCA variable names.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2018-08-31 11:36:40 +02:00
Jeff Squyres
05e5f61fe1 common/verbs-usnic: check that it will actually compile
If someone specifies --with-verbs-usnic, actually do a configury check
to ensure that it will compile (vs. assuming that it will compile if
someone asks for it).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-08-30 13:10:49 -07:00
Gilles Gouaillardet
ad2c207a7e mpool/memkind: plug a memory leak in mca_mpool_memkind_close()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-08-30 10:07:17 +09:00
Gilles Gouaillardet
7556dd0abb opal/util: plug a memory leak in the opal_infosubscriber_t destructor
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-08-30 10:07:17 +09:00
Gilles Gouaillardet
aeddd2f249 pmix/pmix3x: plug a memory leak in external_register()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-08-30 10:07:16 +09:00
Gilles Gouaillardet
6e47c5708e pmix/base: plug a memory leak in opal_pmix_base_select()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-08-30 10:07:16 +09:00
Yossi Itigin
68206a5635
Merge pull request #5569 from hoopoepg/topic/optimize-blocked-calls
PML/UCX: blocked calls optimizations
2018-08-29 14:19:09 +03:00
Yossi Itigin
4bb6845888
Merge pull request #5570 from hoopoepg/topic/opal-mem-hooks-syno
MCA/COMMON/UCX: added synonym to opal_mem_hook variable
2018-08-29 14:16:33 +03:00
Artem Polyakov
00d12c058f
Merge pull request #5596 from karasevb/fix_hwloc_numa_obj
Fixed the NUMA obj detection for hwloc ver >= 2.0.0
2018-08-27 22:15:41 -07:00
Sergey Oblomov
2cd9e04166 PML/UCX: optimization of mprobe call - renamed vars
- renamed of internal variable names
- used unsigned datatypes

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-08-27 09:50:39 +03:00
Sergey Oblomov
38e908f83e PML/UCX: optimization of mprobe call
- refactoring of opal/UCX progress calls

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-08-27 09:50:38 +03:00
Sergey Oblomov
b0f87f2235 PML/UCX: blocked calls optimizations
- added UCX progress priority

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-08-27 09:50:38 +03:00
Boris Karasev
beb0697f24 Fixed copyrights of prev commit.
Signed-off-by: Boris Karasev <karasev.b@gmail.com>
2018-08-27 09:50:11 +03:00
Gilles Gouaillardet
1665b8db8f
Merge pull request #5519 from extrowerk/haiku_patches
fcntl include bugfix
2018-08-27 09:46:43 +09:00
Sergey Oblomov
b72dd83f05 MCA/COMMON/UCX: added synonims for common ucx variables
- added synonims for atomic/osc modules

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-08-26 18:25:21 +03:00
Boris Karasev
e5291ccc34 Fixed the NUMA obj detection for hwloc ver >= 2.0.0
Since version hwloc 2.0.0 has a new organization of NUMA nodes on the
topology tree. This commit adds the detection of local NUMA object for
hwloc => 2.0.0, which fixes the procs bindings policy for rmaps mindist
component.

Signed-off-by: Boris Karasev <karasev.b@gmail.com>
2018-08-24 19:11:52 +03:00
Jeff Squyres
fe0852bcb4 Miscellaneous compiler warning stomps.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-08-24 07:39:14 -07:00
Nathan Hjelm
0a9c358ef8
Merge pull request #5577 from hjelmn/btl_vader_sc_emu_warnings
btl/vader: clean up debuging and squash warning
2018-08-23 09:41:13 -06:00
Nathan Hjelm
c74cf666a9 btl/vader: clean up debuging and squash warning
References #5512

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-08-22 10:57:32 -06:00
Nathan Hjelm
a99dba6cb7
Merge pull request #5553 from markalle/info_snprintf2
snprintf() length fix for info
2018-08-22 10:27:14 -06:00
Sergey Oblomov
6a7f66d9c2 MCA/COMMON/UCX: renamed synonim to opal_mem_hook variable
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-08-22 14:12:33 +03:00
Sergey Oblomov
e00f7a68ba MCA/COMMON/UCX: added synonim to opal_mem_hook variable
- added synonim to opal_mem_hook variable to allow
  to print it in opal_info -a

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-08-21 15:05:12 +03:00
Ralph Castain
5cfa2a7fca Complete integration of job_control
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-08-20 16:10:50 -07:00
Ralph Castain
9948084130 Update to PMIx v3.0.1
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-08-20 15:05:24 -07:00
Aurélien Bouteiller
e46c907468
Adding error handling in OpenIB BTL
bugfix: major: openib send credits returned correctly after a fault for pending frags to dead processes; also tweak the default IB retry timeouts tomake this happen faster

Make it compile in non-debug builds

Mark the IB endpoint as failed when invoking an error; this resolves UDCM connection deadlocks

Changing the default IB retry timeouts is not a good idea.
We'll need to find another way to speedup credit recovery in failure cases.

Remove ULFM specific cases

Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>
2018-08-16 16:53:17 -04:00
Mark Allen
ee6eb9b12b snprintf() length fix for info
The important part of this fix is a couple places 5 was hard-coded that needed to be
strlen(OPAL_INFO_SAVE_PREFIX).

But also this contains a fix for a gcc 7.3.0 compiler warning about snprintf(). There
was an "if" statement making sure all the arguments had appropriate strlen(), but gcc
still complained about the following snprintf() because the size of the struct element
is iterator->ie_key[OPAL_MAX_INFO_KEY + 1].

Signed-off-by: Mark Allen <markalle@us.ibm.com>
2018-08-16 15:32:04 -04:00
Aurelien Bouteiller
6acebc40a1
Handle error cases in TCP BTL
When an error is returned by the socket operations, trigger the
appropriate error path in the PML to give an opportunity for
rerouting/error handling.

Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>
2018-08-14 15:35:24 -04:00
Nathan Hjelm
dca3516765 btl/vader: move memory barrier to where it belongs
The write memory barrier was intended to precede setting a fast-box
header but instead follows it. This commit moves the memory barrier to
the intended location.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-08-13 10:14:34 -06:00
Nathan Hjelm
e0f73866ef
Merge pull request #5525 from hjelmn/event_threading
opal/progress: protect against multiple threads in event base
2018-08-13 09:21:44 -06:00
Jeff Squyres
01e4570af7 hwloc201/configure.m4: make it safe when used with hwloc:external
The Autoconf AC_CONFIG_* macros can only be instantiated exacly once
for any given file, *and* they must be in a code execution path at run
time for the target file to be generated at the end of configure.

For example, if you want to generate file ABC at the end of configure,
you must invoke the AC_CONFIG_FILES(ABC) macro in a code path that
will get executed when configure is run.

That's pretty straightforward.

What's not straightforward is two corner cases:

1. You cannot invoke the AC_CONFIG_FILES(ABC) macro for the same file
   more than once.  If you do, autoreconf will fail (even before you
   can run configure).
2. If AC_CONFIG_FILES(ABC) is not in a code path that is executed by
   configure, the file ABC is not registered properly, and ABC will
   not be generated at the end of configure.

This applies to hwloc because hwloc's HWLOC_SETUP_CORE macro calls
both AC_CONFIG_FILES and AC_CONFIG_HEADER to setup its Makefiles
(etc.) so that targets like "make distclean" and "make distcheck" will
work properly.  Hence, we *have* to invoke HWLOC_SETUP_CORE.

However, the MCA_opal_hwloc_hwloc201_CONFIG macro has a few side
effects.  It would be nice to do able to do something like this:

```
    if hwloc:extern is going to be used:
        Invoke minimal HWLOC_SETUP_CORE (with no side effects)
    else
        Invoke full HWLOC_SETUP_CORE (with side effects)
    fi
```

But we can't, because autoreconf will detect that AC_CONFIG_FILES has
been invoked on the same files more than once (regardless of whether
those code paths will be executed at run time or not).  Kaboom.

Similarly, we can't do this:

```
    if hwloc:extern is not going to be used:
        Invoke full HWLOC_SETUP_CORE (with side effects)
    fi
```

Because then hwloc's AC_CONFIG_FILES won't be registered properly when
hwloc:external *is* used (i.e., when the HWLOC_SETUP_CORE macro is not
in a code path that is executed at run time), and targets like "make
distclean" will fail because hwloc's Makefiles won't have been setup.
Kaboom.

But remember that the hwloc framework is a bit special: there will
only ever be 2 comoponents: external and internal.  External is
guaranteed to be configured first because of its priority.  So the
internal component (i.e., this component) immediately knows if it is
going to be used or not based on whether the external component
configuration succeeded or failed.

Specifically: regardless of whether the internal component (i.e., this
component) is going to be used, we have to invoke HWLOC_SETUP_CORE.
But we can manage the side effects: allow the side effects when
this/internal component is going to be used, and avoid the side
effects when this/internal component is not going to be used.

This is a little less clean than I would have liked, but because of
Autoconf's oddity about its AC_CONFIG_* macros, this is the only
solution I could come up with.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-08-11 11:05:23 -07:00
Jeff Squyres
69aa46e167 libevent2022/configure.m4: always invoke sub-configure
In order to make "make distclean" (and friends) work, we need to
*always* invoke the embedded configure script -- even if we know that
we're not going to use this component.

But in cases where we know we're not going to use this component, we
also need to avoid the side effects of the code path that is used when
we *do* want to use this component.  So split the two possibilities
into two different macros:

1. MCA_opal_event_libevent2022_FAKE_CONFIG: which does almost nothing
   except invoke the underlying "configure" script.
2. MCA_opal_event_libevent2022_REAL_CONFIG: which does all the real
   work (including invoking the underlying "configure" script).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-08-11 06:03:46 -07:00
Jeff Squyres
80df3f040b libevent2022/configure.m4: trivial cleanup
Put argument to AM_CONDITIONAL inside [].  No code or logic changes.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-08-10 10:30:45 -07:00
Jeff Squyres
17aa64e438 libevent2022/configure.m4: minor comment cleanup
Change # -> dnl.  No code or logic changes.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-08-10 10:30:04 -07:00
Jeff Squyres
b063cb6b0f libevent2022: only configure if event:external fails
We know that event:external will be configured first (because of its
priority).  Take advantage of that here in libevent2022 by having it
refuse to configure / politely fail if event:external succeeded.

Also print out some additional lines in configure output indicating
what is going on (i.e., event:external succeeded, so this component
will be skipped, or event:external failed, so this component will be
used).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-08-08 10:22:38 -07:00
Jeff Squyres
4e5f432786 hwloc201: only configure if hwloc:external fails
We know that hwloc:external will be configured first (because of its
priority).  Take advantage of that here in hwloc201 by having it
refuse to configure / politely fail if hwloc:external succeeded.

Also print out some additional lines in configure output indicating
what is going on (i.e., hwloc:external succeeded, so this component
will be skipped, or hwloc:external failed, so this component will be
used).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-08-08 10:22:38 -07:00
Nathan Hjelm
bdbb853461 opal/progress: protect against multiple threads in event base
libevent does not support multiple threads calling the event loop on
the same event base. This causes external libevent's to print out
re-entrant warning messages. This commit fixes the issue by protecting
the call to the event loop with an atomic swap check.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-08-07 16:13:43 -06:00
Nathan Hjelm
eeae3f9b93
Merge pull request #5517 from bosilca/topic/treematch_warnings
Remove few warnings identified by @rhc in #5514.
2018-08-06 13:25:07 -06:00
Zoltán Mizsei
ac3f8a16ed fcntl include bugfix
Signed-off-by: Zoltán Mizsei <zmizsei@extrowerk.com>
2018-08-06 19:45:59 +02:00
Boris Karasev
57683366ca pmix: added check for pmix fence status
Signed-off-by: Boris Karasev <karasev.b@gmail.com>
2018-08-06 15:01:57 +06:00
George Bosilca
6d11a45f44
Remove few warnings identified by @rhc in #5514.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2018-08-03 16:21:06 -04:00
Thananon Patinyasakdikul
080115d440 btl/ofi: Added 2 side communication support.
The 2 sided communication support is added for non-tagmatching provider
to take advantage of this BTL and PML OB1. The current state is
"functional" and not optimized for performance.

Two sided support is disabled by default and can be turned on by mca
parameter: "mca_btl_ofi_mode".

Signed-off-by: Thananon Patinyasakdikul <thananon.patinyasakdikul@intel.com>
2018-08-03 12:30:03 -07:00
Ralph Castain
f7a537cf04 Fix typo
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-07-25 20:05:33 -07:00
Ralph Castain
bcdb1f45ac Fix the multiple pe/proc option
Things got a little out of whack and we weren't actually processing the map-by modifiers, plus an error crept into the display of the binding report. So clean those up.

Thanks to @tonyreina for the error report

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-07-25 18:47:39 -07:00
Ralph Castain
55cefedf9b Cleanup pmix selection check
Allow for versions > 3

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-07-25 16:11:32 -07:00
Nathan Hjelm
47ed8e8830 btl/uct: fix compile warnings/errors
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-07-23 14:04:38 -06:00
Ralph Castain
5cab823979 Leave opal_event_external_support exposed as global var
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-07-23 09:18:48 -07:00
Jeff Squyres
a70ecf5267 event/external: prefer external event component
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-07-23 09:20:27 +09:00
Jeff Squyres
83e4a45a9f event: trivial comment change
Switch from #-style to dnl-style.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-07-23 09:20:27 +09:00
Gilles Gouaillardet
ce2c9fffd4 hwloc: prefer external hwloc component
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-07-23 09:20:27 +09:00
Ralph Castain
8a6dc0b211
Merge pull request #5456 from rhc54/topic/px
Default to internal PMIx if newer than external
2018-07-19 11:53:47 -07:00
Ralph Castain
1e6aaf7f22 Default to internal PMIx if newer than external
Per https://github.com/open-mpi/ompi/issues/5031, if the user didn't specify a particular PMIx installation, then default back to the internal version if it is newer than the discovered external one. PMIx doesn't yet provide a full signature so we have to just get as close as possible for now.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-07-19 11:02:03 -07:00
Yossi Itigin
29812494f2
Merge pull request #5402 from hoopoepg/topic/common-del-procs
MCA/COMMON/UCX: del_procs calls are unified to common module
2018-07-19 11:19:45 +03:00
Sergey Oblomov
920cc2e0d9 MCA/COMMON/UCX: del_procs calls are unified to common module
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-18 07:37:25 +03:00
Howard Pritchard
4447738098
Merge pull request #5414 from hppritcha/topic/iwarp_only_by_default
btl/openib: only look for iwarp/roce by default
2018-07-17 20:08:00 -06:00
Howard Pritchard
bc8134dae1
Merge pull request #5448 from thananon/ofi_context
btl/ofi: Added FI_CONTEXT as requirement.
2018-07-17 19:51:13 -06:00
Howard Pritchard
6818272392 btl/openib: only look for iwarp/roce by default
Due to decreasing support by vendors/other orgs for the OpenIB BTL,
only look for iWarp/RoCE devices by default.  Allow IB HCAs
with ports configured for ethernet.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-07-17 19:11:37 -06:00
Thananon Patinyasakdikul
033c364ee0 btl/ofi: Added FI_CONTEXT as requirement.
OFI BTL uses context for completion but never ask for it in
fi_getinfo(3). This commit makes sure that we always ask for FI_CONTEXT
to eliminate any potential error.

Signed-off-by: Thananon Patinyasakdikul <thananon.patinyasakdikul@intel.com>
2018-07-17 12:18:43 -07:00
Sergey Oblomov
a4b8253fa2 MCA/COMMON/UCX: fixed initialization of malloc hooks
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-17 20:09:50 +03:00
Sergey Oblomov
1c7ae22dfb MCA/COMMON/UCX: shift opal memhooks into common UCX
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-17 13:46:38 +03:00
Ralph Castain
4a596d35f7 Remove the PMIx ext4x component
Update configury to redirect anything at or above v3 to the ext3x component

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-07-13 19:51:50 -07:00
Nathan Hjelm
9d3a79925b btl/vader: fix bugs in rma emulation
This commit fixes two bugs in the RMA/atomic emulation code:

 1) Fix a fragment leak when using AMO emulation.

 2) Always initialize the single-copy emulation code. This is required
 to use the AMO support.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-07-12 15:50:50 -06:00
Ralph Castain
fdca304268 Default to external PMIx installation
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-07-10 16:12:52 -07:00
Nathan Hjelm
8b090103e2 opal/fifo: fix 128-bit atomic fifo on Power9
This commit updates the atomic fifo code to fix a consistency issue
observed on Power9 systems when builtin atomics are used. The cause
was two things: 1) a missing write memory barrier in fifo push, and 2)
a read ordering issue when reading the fifo head non-atomically. This
commit fixes both issues and appears to correct then inconsistency.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-07-10 15:37:11 -06:00
KAWASHIMA Takahiro
3e179ba95f hwloc/external: Suppress missing-include-dirs warning
If OMPI is configured with `--with-hwloc=external` or `--with-hwloc=DIR`
and gfortran is used, I see a lot of warnings when compiling files
under the `ompi/mpi/fortran` directory.

```
f951: Warning: Nonexistent include directory
'BUILD_DIR/opal/mca/hwloc/external/hwloc/include' [-Wmissing-include-dirs]
```

There is no such `include` directory in the source tree and `configure`-
created tree. I think these lines in the `configure.m4` file are wrongly
copied from that for the embedded `hwlocXXX` component in the past.

The `-Wmissing-include-dirs` option is enabled in gfortran by default
but it is not enabled by default (or even with `-Wall`) in gcc and g++.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-07-09 10:55:33 +09:00
Yossi Itigin
e77e31b50b
Merge pull request #5378 from hoopoepg/topic/unify-ucx-logging
MCA/COMMON/UCX: unified logging across all UCX modules
2018-07-08 12:45:26 +03:00
Ralph Castain
17c4cf0db8 Install PMIx v3.0.0 release
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-07-06 06:38:02 -07:00
Sergey Oblomov
bef47b792c MCA/COMMON/UCX: unified logging across all UCX modules
- added common logging infrastructure for all
  UCX modules
- all UCX modules are switched to new infra

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-05 16:25:39 +03:00
Sergey Oblomov
8080283b3d MCA/COMMON/UCX: changed return type for wait_request
- for now wait_request returns OMPI status
- updated callers

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-04 23:29:38 +03:00
Sergey Oblomov
f574c14e3a ATOMICS/UCX: redefine atomic module API
- now it accepts integer values directily instead of
  pointers

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-04 14:41:45 +03:00
Yossi Itigin
4962651567
Merge pull request #5366 from hoopoepg/topic/mca-common-ucx-unify-2
MCA/COMMON/UCX: minor unification of del_proces calls
2018-07-04 14:38:37 +03:00
Nathan Hjelm
bd5cd62df9 btl/ugni: fix up some warnings
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-07-03 16:30:44 -06:00
Nathan Hjelm
d8916a4672 btl/ugni: fix race condition in completing frags
The descriptor flags field in a fragment were being ready after the
fragment may have been freed. This commit reads the flags before
calling the user callback.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-07-03 10:48:54 -06:00
Nathan Hjelm
87d41da62b btl/vader: add support for atomics and emulated rdma
This commit adds support for atomic operations as well as rdma for
systems without rdma support. This support is implemented using an
internal send tag.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-07-02 13:57:11 -06:00
Nathan T. Weeks
08f9ae97ee btl/ugni: update BTL_VERBOSE argument list
Signed-off-by: Nathan T. Weeks <weeks@iastate.edu>
2018-07-02 09:23:30 -06:00
Sergey Oblomov
c2bd6af9f2 MCA/COMMON/UCX: minor unification of del_proces calls
- some common functionality of del_procs calls is moved into
  mca_common module
- blocking ucp_put call is replaced by non-blocking routine

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-02 15:10:53 +03:00
Jeff Squyres
7b0dd03e92 tcp/btl: fix a cast
The current cast is *functional*, but isn't really the way it should
be done.  This commit makes the cast the way it should be done.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-06-29 07:25:46 -07:00
Jeff Squyres
57bc657e7f btl/tcp: fix hash map usage
Fix two facepalms:

1. The "uint32" in the hash map functions refer to the *key* size, not
   the *value* size.  The values are always 64 bits.
2. Pass the straight value to the "set" functions -- not the pointer
   to the value.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-06-28 15:29:41 -07:00
Yossi Itigin
3a7271ef4e
Merge pull request #5344 from hoopoepg/topic/mca-common-ucx-fixed-build
MCA/COMMON/UCX: fixed build scripts
2018-06-28 15:14:04 +03:00
Sergey Oblomov
624d59604b MCA/COMMON/UCX: minor optimization of build scripts
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-06-28 12:58:07 +03:00
Thananon Patinyasakdikul
304cf97ab5
Merge pull request #5334 from thananon/ofi_progress_fix
btl/ofi: progress now happens after a threshold.
2018-06-27 12:51:33 -07:00
Sergey Oblomov
de8568c822 MCA/COMMON/UCX: enabled fallback into older UCX API
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-06-27 19:59:40 +03:00
Sergey Oblomov
1223b05811 MCA/COMMON/UCX: fixed build scripts
- updated evaluation of UCX lib - used call from UCX v1.3
- updated makefile compilation flags

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-06-27 11:10:25 +03:00
Thananon Patinyasakdikul
be76896f7c btl/ofi: progress now happens after a threshold.
This commit changed the way btl/ofi call progress. Before, we force
progression with every rdma/atomic call. This gives performance boost in
some case and slow down on others. Now we only force progression after
some number of rdma calls which result in better performance overall.

Also added new MCA parameter 'mca_btl_ofi_progress_threshold' to set
the threshold number. The new default is 64.

Also:
Added FI_DELIVERY_COMPLETE to tx_rtx flags to ensure that the completion
is generated after the message has been received on the remote side.

Signed-off-by: Thananon Patinyasakdikul <thananon.patinyasakdikul@intel.com>
2018-06-26 10:39:45 -07:00
Nathan Hjelm
b0ac6276a6 btl/ugni: improve multi-threaded RDMA performance
This commit improves the injection rate and latency for RDMA
operations. This is done by the following improvements:

 - If C11's _Thread_local keyword is available then always use the
   same virtual device index for the same thread when using RDMA. If
   the keyword is not available then attempt to use any device that
   isn't already in use. The binding support is enabled by default but
   can be disabled via the btl_ugni_bind_devices MCA variable.

 - When posting FMA and RDMA operations always attempt to reap
   completions after posting the operation. This allows us to
   better balance the work of reaping completions across all
   application threads.

 - Limit the total number of outstanding BTE transactions. This
   fixes a performance bug when using many threads.

 - Split out RDMA and local SMSG completion queue sizes. The RDMA
   queue size is better tuned for performance with RMA-MT.

 - Split out put and get FMA limits. The old btl_ugni_fma_limit MCA
   variable is deprecated. The new variable names are:
   btl_ugni_fma_put_limit and btl_ugni_fma_get_limit.

 - Change how post descriptors are handled. They are no longer
   allocated seperately from the RDMA endpoints.

 - Some cleanup to move error code out of the critical path.

 - Disable the FMA sharing flag on the CDM when we detect that there
   should be enough FMA descriptors for the number of virtual devices
   we plan will create. If the user sets this flag we will not unset
   it. This change should improve the small-message RMA performance by
   ~ 10%.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-06-26 11:31:35 -06:00
Ralph Castain
0ddbc75ce5
Merge pull request #4930 from kizill/fix-ipv6
fixed ipv6 OOB connection problems (fix issue #1585)
2018-06-26 09:13:53 -07:00
Nathan Hjelm
abb87f9137
Merge pull request #5338 from ggouaillardet/topic/uct
btl/uct: misc fixes
2018-06-26 08:56:40 -06:00
Yossi Itigin
ee873f4f79
Merge pull request #5322 from hoopoepg/topic/mca-ucx-common
MCA/UCX: added common module
2018-06-26 13:54:12 +03:00
Gilles Gouaillardet
b40b835a70 btl/uct: remove debug code
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-06-26 16:03:16 +09:00
Gilles Gouaillardet
552d0809aa btl/uct: add missing include file
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-06-26 14:53:02 +09:00
Nathan Hjelm
6c089518e7 btl/uct: make uct endpoints array a flexible array member
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-06-25 18:14:58 -06:00
Nathan Hjelm
c5c5b42307 btl: add a new btl for the UCT layer in OpenUCX
This commit adds a new btl for one-sided and two-sided. This btl
uses the uct layer in OpenUCX. This btl makes use of multiple uct
contexts and per-thread device pinning to provide good performance
when using threads and osc/rdma. This btl has been tested extensively
with osc/rdma and passes all MTT tests on aries and IB hardware.

For now this new component disables itself but can be enabled by
setting the btl_ucx_transports MCA variable with a comma-delimited
list of supported memory domains/transport layers. For example:
--mca btl_uct_memory_domains ib/mlx5_0. The specific transports used
can be selected using --mca btl_uct_transports. The default is to use
any available transport.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-06-25 18:14:58 -06:00
Sergey Oblomov
bf7fd480e9 MCA/COMMON/UCX: added non-blocking implementations of atomics
- added implementation of swap/cswap/fadd operations
- blocking add64 is replaced by non-blocking routine

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-06-25 12:25:31 +03:00
Sergey Oblomov
63e7ba6843 MCA/COMMON/UCX: added parameter for UCX/opal progress
- added parameter to set UCX/opal progresses
- minor refactoring of request wait routines

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-06-25 11:00:12 +03:00
Jeff Squyres
3767ce27c0 btl/tcp: trivial whitespace clean
No code/logic changes.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-06-23 08:04:12 -07:00
Jeff Squyres
9034717876 btl/tcp: use a hash map for kernel IP interface indexes
The giant size of the TCP proc struct is causing a problem in some
environments (because it is allocated on the stack), and it was too
big, anyway.

Instead, use a hash map.  That way, it starts small and can grow if it
needs to.  It also makes no assumptions about the values of the kernel
interface indexes.

Fixes #5292.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-06-23 08:03:30 -07:00
Jeff Squyres
e3d6c5ce3a pmix3/pmix_server.c: minor compiler warning stomp
Submitted upstream https://github.com/pmix/pmix/pull/776.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-06-23 06:35:09 -07:00
Sergey Oblomov
d57ae62dee MCA/UCX: added common module
- implemented non-blocking routines for flush operations

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-06-22 16:41:09 +03:00
Jeff Squyres
e305e80aff
Merge pull request #5317 from jsquyres/pr/update-bind-to-cpulist-option
orterun: use consistent CLI option name for --bind-to
2018-06-21 12:43:18 -04:00
Jeff Squyres
4603852740 orterun: use consistent CLI option name for --bind-to
Since the new binding option is tied to the --cpu-list orterun CLI
option, make the --bind-to option reflect the same name (vs. the
--cpu-set CLI option, which is entirely different).  For example:

    mpirun --bind-to cpu-list:ordered ...

Note that "--bind-to cpulist:ordered" is accepted as a synonym,
because people will be lazy.

Also add some minor updates to the orterun.1in man page for
clarification.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-06-21 08:22:00 -07:00
Edgar Gabriel
fb16d40775
Merge pull request #5196 from edgargabriel/topic/cuda
io/ompio: introduce initial support for cuda buffers in ompio
2018-06-21 10:14:43 -05:00
Edgar Gabriel
8c2ea0ef49 opal/dataype: add additional interface to retrieve more details about
cuda buffer

the existing interface in opal_datatype_cuda do not allow to distinguish whether a
buffer is a managed or unmanaged cuda buffer. Add an interface that allows to
retrieve this information throug a convertor, since the information is actually available
in the mca_common_cuda_* routines.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2018-06-21 09:25:50 -05:00
Ralph Castain
f17d47087a Define a new binding method and qualifier
Allow users to request that procs be bound to a cpu in a given cpu-list based on their corresponding local rank

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-06-20 21:26:09 -07:00
Ralph Castain
5ac2ce6346 Cover all the PMIx data types
Cover all data types for OPAL-to-PMIx conversion, generating error logs when we hit something we don't support

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-06-20 09:06:19 -07:00
Boris Karasev
39c9cb12bb pmix/ext2x: fixed detection PMIx v2.0 by pmix component
Signed-off-by: Boris Karasev <karasev.b@gmail.com>
2018-06-20 13:23:51 +03:00
Ralph Castain
08707c9762 Sync to updated PMIx v3.0.0rc
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-06-19 21:25:43 -07:00
Noah Evans
a64abadf97 Fix mca_base_var_files separator
In the opal list parsing behavior paths should be separated by ':' while files are separated by ','. In the opal and pmix code (the pmix fix is in a separate commit) there was a mistake in the parsing such that files were being separated by ':' when they should be separated by ','s. This commit attempts to address this mismatch.

Signed-off-by: Noah Evans <noah.evans@gmail.com>
2018-06-19 12:59:07 -06:00
Ralph Castain
f0a0d606a0 Correct accounting for tools
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
(cherry picked from commit 1be080f7b92bad39745f42628a8cb6afefad2d2a)
2018-06-18 13:24:25 -07:00
Jeff Squyres
cd8d169599
Merge pull request #5276 from jsquyres/pr/info-key-len-fix
util/info: tighten up error detection on key length
2018-06-18 12:03:21 -04:00
Thananon Patinyasakdikul
13f58f3191
Merge pull request #5274 from thananon/ofi_sep
btl/ofi: add scalable endpoint support.
2018-06-18 08:41:06 -07:00
Jeff Squyres
266d5b2110
Merge pull request #5277 from jsquyres/pr/cygwin-patch
external libevent: fix for Cygwin
2018-06-18 11:08:30 -04:00
Ralph Castain
7981818b84 Update PMIx atomics
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-06-17 10:03:49 -07:00
Ralph Castain
fa18ba395d Sync to latest PMIx v3.0rc
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-06-17 02:41:46 -07:00
Ralph Castain
ac7bb15505 Fix other typo in help message
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-06-16 16:30:52 -07:00
Ralph Castain
8cfce583c0 Correct typo to properly check for PMIx v4
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-06-16 16:29:05 -07:00
Jeff Squyres
07c8ec6a3c external libevent: fix for Cygwin
Fix from Marco Atzeri for building on Cygwin.

Signed-off-by: Marco Atzeri <marco.atzeri@gmail.com>
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-06-16 09:08:58 -07:00
Jeff Squyres
2670a7f55c util/info: tighten up error detection on key length
Fix CID 1435996: use the proper % type to render the size.

Also use opal_output(), not fprintf().  For debug builds, abort
without dumping core (dumping core is very unfriendly when running
thousands of automated tests) -- the stderr output is sufficient to
find the coding error.  For non-debug builds, truncate the key and
emit a warning that it almost certainly will not work properly.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-06-16 08:45:03 -07:00
Ralph Castain
94794011f1 Silence warnings and ignore test binary
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-06-15 11:32:22 -07:00
Ralph Castain
e2e6da4379
Merge pull request #5258 from rhc54/topic/pmix4
Sync to PMIx v3.0rc and add ext4x
2018-06-15 09:41:08 -07:00
Thananon Patinyasakdikul
dae3c9447c btl/ofi: add scalable endpoint support.
This commit add support for scalable endpoint to enhance multithreaded
application performance. The BTL will detect the support from ofi
provider and will fallback to normal usage of scalable endpoint is not
supported.

NEW MCA parameters:
- mca_btl_ofi_disable_sep: force the btl to not use scalable endpoint.
- mca_btl_ofi_num_contexts_per_module: number of communication context
  to create (should be the same as number of thread).

Signed-off-by: Thananon Patinyasakdikul <thananon.patinyasakdikul@intel.com>
2018-06-14 15:44:29 -07:00
Thananon Patinyasakdikul
08cfacddee
Merge pull request #5272 from thananon/opal__thread
opal/threads: Added keyword `opal_thread_local` for TLS
2018-06-14 14:45:47 -07:00
Thananon Patinyasakdikul
469a404c3b opal/thread: Added keyword opal_thread_local for TLS.
configure: add checks for `__thread` on top of current check for `_Thread_local` and define OPAL_HAVE_THREAD_LOCAL if the compiler support TLS.

Added `opal_thread_local` keyword to unify the definition.

Signed-off-by: Thananon Patinyasakdikul <thananon.patinyasakdikul@intel.com>
2018-06-14 13:25:04 -07:00
Nathan Hjelm
009a3f093b opal/asm: fix 32-bit fetch and op atomics
These functions were erroneously returing the new, not the old value.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-06-14 13:54:52 -06:00
Howard Pritchard
7dcab6e4a4
Merge pull request #5269 from hppritcha/topic/squash_gcc7.3.0_warnings
topo/treematch - quash compiler warning
2018-06-13 21:13:04 -05:00
Howard Pritchard
64de269cc3 topo/treematch - quash compiler warning
quash a compiler warning showing up with gcc 7.3

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-06-13 16:34:17 -05:00
Thananon Patinyasakdikul
390d72addd
Merge pull request #4885 from davideberius/spc_pr
Initial Software-based Performance Counters PR
2018-06-12 14:04:49 -07:00
Jeff Squyres
591b225527
Merge pull request #5245 from PeterGottesman/hwloc-fix
Ensure required hwloc directories are in dist tarballs
2018-06-12 13:08:35 -04:00
Peter Gottesman
afe363b73b Ensure required hwloc directories are in dist tarballs
Fixes MTT failure when running autogen on a tarball

Signed-off-by: Peter Gottesman <pgottesm@cisco.com>
2018-06-12 08:33:50 -07:00