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Граф коммитов

3222 Коммитов

Автор SHA1 Сообщение Дата
Nathan Hjelm
3caeda21dc memory/patcher: do not hook madvise
It is not possible to hook madvise at this time due to a deadlock when
using glibc.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-03-07 16:26:53 -07:00
Joshua Ladd
e2ba60b778 Merge pull request #3111 from jladd-mlnx/topic/cx5-device-param
Adding latest ConnectX-5 adapter vendor part id to OpenIB device params.
2017-03-07 13:55:46 -05:00
Nathan Hjelm
15ea9c5524 Merge pull request #3013 from hjelmn/rcache_lifo
rcache/base: do not free memory with the vma lock held
2017-03-07 09:11:04 -07:00
Jeff Squyres
c2adf359cf Merge pull request #3083 from ggouaillardet/topic/hwloc_v15
hwloc: add support for hwloc v1.5
2017-03-07 10:01:24 -05:00
Joshua Ladd
b28647857f Adding latest ConnectX-5 adapter vendor part id to OpenIB device params.
Signed-off-by: Joshua Ladd <jladd.mlnx@gmail.com>
2017-03-07 00:19:54 +02:00
Ralph Castain
aca7091114 Fix some minor compatibility issues by ensuring job-level data gets stored against wildcard rank in the cray, s1, and s2 components, and that the ext1 component translates all wildcard rank requests into the peer's rank since v1.x of PMIx doesn't understand wildcard ranks
Closes #3101

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-05 10:30:59 -08:00
Ralph Castain
1de72ff023 Silence an unnecessary error log
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-02 17:18:34 -08:00
Gilles Gouaillardet
7e01be60d9 hwloc: add support for hwloc v1.5
hwloc v1.5 does not support HWLOC_OBJ_OSDEV_COPROC
nor hwloc_topology_dup(), so for this version :
- do not search for coprocessors
- do not try hwloc_topology_dup(), note this is not
  used anywhere in the code base

Thanks Jeff for helping with the wording

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-03-03 09:39:24 +09:00
Ralph Castain
83199979ba Remove the stale opal/sec framework
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-02 15:41:56 -08:00
Jeff Squyres
5b484c91f4 btl/tcp: use show_help to print the dropped-TCP warning
Make the message more friendly / more detailed, and de-duplicate it
(just in case it happens a lot).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-03-01 16:31:29 -08:00
George Bosilca
ec4a235e6a
Allow a TCP proc release during the create.
This is mostly for error cases, where we need to release the
newly created proc. Currently the code deadlocks because the endpoint
lock is help at the release and the lock is not recursive.

Aslo added some code to print the IP addresses that don't match during
the TCP connection step.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2017-03-01 13:17:54 -05:00
Jeff Squyres
d5266aba90 Merge pull request #2955 from jsquyres/pr/hwloc-external-fixes
Fix --with-hwloc=external
2017-02-28 14:57:07 -05:00
Josh Hursey
0006f0d7c5 Merge pull request #2773 from jjhursey/topic/hook-fwk
Add a 'hook' framework
2017-02-28 12:29:50 -06:00
Jeff Squyres
fec519a793 hwloc: rename opal/mca/hwloc/hwloc.h -> hwloc-internal.h
Per a prior commit, the presence of "hwloc.h" can cause ambiguity when
using --with-hwloc=external (i.e., whether to include
opal/mca/hwloc/hwloc.h or whether to include the system-installed
hwloc.h).

This commit:

1. Renames opal/mca/hwloc/hwloc.h to hwloc-internal.h.
2. Adds opal/mca/hwloc/autogen.options to tell autogen.pl to expect to
   find hwloc-internal.h (instead of hwloc.h) in opal/mca/hwloc.
3. s@opal/mca/hwloc/hwloc.h@opal/mca/hwloc/hwloc-internal.h@g in the
   rest of the code base.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-02-28 07:48:42 -08:00
Joshua Hursey
c10bbfded6 ompi/hook: Add the hook/license framework
* Include a 'demo' component that shows some of the features.
 * Currently has hooks for:
   - MPI_Initialized
     - top, bottom
   - MPI_Init_thread
     - top, bottom
   - MPI_Finalized
     - top, bottom
   - MPI_Init
     - top (pre-opal_init), top (post-opal_init), error, bottom
   - MPI_Finalize
     - top, bottom
 * Other places in ompi can 'register' to hook into any one of these places
   by passing back a component structure filled with function pointers.
 * Add a `MCA_BASE_COMPONENT_FLAG_REQUIRED` flag to the MCA structure that
   is checked by the `hook` framework. If a required, static component has
   been excluded then the `hook` framework will fail to initialize.
   - See note in `opal/mca/mca.h` as to why this is checked in the `hook`
     framework and not in `opal/mca/base/mca_base_component_find.c`

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-02-27 12:05:53 -05:00
Gilles Gouaillardet
af0b5cffb4 asm: rename the AMD64 into X86_64
in this context, AMD64 really means amd64 or em64t, so let's
rename this into X86_64 in order to avoid any confusion

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-02-27 15:10:50 +09:00
Ralph Castain
e86a0dbf39 Update to PMIx master to include dlopen fixes and addition of libltdl support
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-22 11:54:33 -08:00
Nathan Hjelm
60ad9d1817 rcache/base: do not free memory with the vma lock held
This commit makes the vma tree garbage collection list a lifo. This
way we can avoid having to hold any lock when releasing vmas. In
theory this should finally fix the hold-and-wait deadlock detailed
in #1654.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-02-21 21:04:46 -07:00
Ralph Castain
8cffdcf127 Ensure that the pmix headers and lib get installed when --with-devel-headers is given so that PMIx applications can be built and executed against the "embedded" PMIx version
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-21 13:46:46 -08:00
Gilles Gouaillardet
4184c01be5 Merge pull request #2393 from bosilca/topic/no_predefined_ddt_refcount
Don't refcount the predefined datatypes.
2017-02-21 09:38:11 +09:00
Gilles Gouaillardet
bb2481a84b pmix2x: synchronize to the latest PMIx master
pmix/master@f57d9b2953

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-02-20 10:45:17 +09:00
Ralph Castain
f49118eaab Fix some pmix configuration code
Remove stale file reference that caused a check to always fail. Update psm2 function check to new libs

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-16 10:54:47 -08:00
Howard Pritchard
b272f87926 Merge pull request #2968 from hjelmn/pmix_cray
pmix/cray: performance improvements and cleanup
2017-02-16 11:41:59 -07:00
Ralph Castain
201f8571ca Ensure we retain the peer object until we are done with it, then detect that the socket has closed due to a lost connection and cleanly release the message event
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-15 18:30:55 -08:00
Ralph Castain
223495325d Fix binding policy bug and support pe=1 modifier
Allow someone to specify the "pe=N" modifier to a mapping policy when N=1. This equates to just "bind-to core", but helps people who use a script to set the PE policy. Fix a bug where setting the binding policy left a lingering "if-supported" flag that shouldn't be there.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-15 14:55:17 -08:00
Ralph Castain
9cd7349d7c Instead of completely free'ing the event base, pause the PMIx progress thread before tearing down the infrastructure, and then release the event base at the end of the procedure. This allows any infrastructure objects holding events to delete them prior to free'ing the event base.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-15 05:02:43 -08:00
Ralph Castain
f7fe2f7189 Merge pull request #2977 from rhc54/topic/spawn
Fix comm_spawn by registering nspace info only when needed
2017-02-15 04:31:54 -08:00
Ralph Castain
68b53e2179 Fix comm_spawn by registering nspace info only when needed - either when we have local procs, or when job-level info is required by connecting jobs
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-14 19:47:56 -08:00
Ralph Castain
404fe327be Merge pull request #2973 from rhc54/topic/cleanups
Update to newest PMIx master (includes configuration cleanups). Silence trivial Coverity warning in hwloc base.
2017-02-14 17:38:18 -08:00
Ralph Castain
0c8609ca16 Update to newest PMIx master (includes configuration cleanups). Silence trivial Coverity warning in hwloc base.
Cleanup a race condition segfault during finalize by ensuring the PMIx progress thread is stopped prior to starting to tear down the messaging components

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-14 15:14:00 -08:00
Nathan Hjelm
8562b87ad3 Merge pull request #2967 from hjelmn/auto_bool
mca/base: add new base enumerator (auto_bool)
2017-02-14 12:25:56 -07:00
Nathan Hjelm
5683e7836f Merge pull request #2965 from hjelmn/deprecated_fix
mca/base: fix deprecated variable help message
2017-02-14 12:22:11 -07:00
Nathan Hjelm
3b912ea2a7 pmix/cray: performance improvements and cleanup
Do not use opal_output_verbose inside O(n) loops. This was causing us
to make O(n) calls to snprintf which was greatly slowing launch at
scale.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-02-14 11:13:10 -07:00
Nathan Hjelm
9e692ce264 mca/base: add new base enumerator (auto_bool)
This commit adds a new base enumerator type for variables that take of
the values -1, 0, and 1. These values are mapped to the strings auto,
false, true. This commit updates the mpi_leave_pinned MCA variable to
use the new enumerator.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-02-14 10:21:45 -07:00
Nathan Hjelm
33676c9960 mca/base: fix deprecated variable help message
Actually print out the original variable name.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-02-14 09:55:43 -07:00
Ralph Castain
35578b4009 Update to lastest PMIx master
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-13 23:19:26 -08:00
Jeff Squyres
a8247a76c9 Merge pull request #2948 from jsquyres/pr/update-warn-component-unused
help btl base: tell how to disable the warning
2017-02-09 21:10:01 -05:00
Jeff Squyres
e272250531 help btl base: tell how to disable the warning
As reported in
https://www.mail-archive.com/users@lists.open-mpi.org/msg30607.html,
give instructions in the show_help message how to disable the
warning.  Thanks to Susan Schwarz for reporting the issue.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-02-09 15:51:30 -08:00
Gilles Gouaillardet
be26152839 Merge pull request #2939 from ggouaillardet/topic/pmix2x_6ed27be839e3f17a2b93885321e15fb26d802e93
pmix2x: Update to latest PMIx master
2017-02-08 16:40:57 +09:00
Gilles Gouaillardet
3d0541f2bf mpool/memkind: add a missing include file
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-02-08 16:06:22 +09:00
Gilles Gouaillardet
7acef4833e pmix2x: Update to latest PMIx master
pmix/master@6ed27be839

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-02-08 13:23:27 +09:00
KAWASHIMA Takahiro
4b2eba34a6 Merge pull request #2933 from kawashima-fj/pr/dstore-config-desc
pmix/pmix2x: Correct configure option description
2017-02-08 13:03:27 +09:00
George Bosilca
bc2890ed11
Upon a new connection go over all available ifaces.
Add a verbose to show all the failed attempts to match the
remote interfaces based on the modex info.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2017-02-07 19:15:49 -05:00
Jeff Squyres
100b112d3c pmix: fix zlib protection macro usage
It's possible that we can have zlib.h but still not have zlib support.
Use the correct macro to protect the usage of calling zlib functions.

This fixes 32-bit MTT builds at Cisco (e.g.,
https://mtt.open-mpi.org/index.php?do_redir=2389).

Submitted upstream to PMIX: https://github.com/pmix/master/pull/290

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-02-07 05:52:32 -08:00
KAWASHIMA Takahiro
750406f67b pmix/pmix2x: Correct configure option description
`--enable-pmix-dstore` option was enabled by default in f4a5511.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2017-02-07 11:52:56 +09:00
Gilles Gouaillardet
c62498ab3d btl/tcp: remove reference to just removed tcp_local
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-02-07 09:32:09 +09:00
Jeff Squyres
368ab4d9a5 Merge pull request #2684 from bosilca/topic/tcp_fixes
Remove the tcp_local field from the TCP component.
2017-02-06 16:32:06 -05:00
bosilca
c331e6794c Allow all tuned MCA parameters to be modified programatically. (#2829)
Fix a comment in the MCA header.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2017-01-31 21:47:36 -05:00
Ralph Castain
edcfdf2365 Update to latest PMIx master
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-31 08:01:37 -08:00
Gilles Gouaillardet
b078e57e73 pmix/ext1x: fix misc memory leaks in namespace registration
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-30 10:52:42 +09:00
Gilles Gouaillardet
f51fc293a2 ext1x/pmix1x_client: plug misc memory leaks
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-30 10:52:42 +09:00
Gilles Gouaillardet
022cca79ea pmix/ext1x: plug a memory leak in opal_lkupcbfunc()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-30 10:52:36 +09:00
Gilles Gouaillardet
f485d12a82 pmix: rename the ext11 component into ext1x
also use the same naming scheme thann pmix/ext2x

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-30 10:52:35 +09:00
Gilles Gouaillardet
dccb1899e6 pmix/ext11: correctly use PMIx_server_register_nspace()
PMIx_server_register_nspace() is an asynchronous operation, so
the pmix glue wait for it completes before returning.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-30 09:23:19 +09:00
Gilles Gouaillardet
6955e1e25c pmix/ext11: fix compilation
the argc field from the opal_pmix_app_t struct was removed,
so adjust the pmix/ext11 glue accordingly.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-30 09:23:18 +09:00
Howard Pritchard
fca45a2742 mca help: fix typo found by user
Fix typo found by @pozdneev

Fixes #2821

bot:notest

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-01-28 09:37:43 -07:00
Ralph Castain
3302864a7d Cleanup a typo that can cause a segfault - use a local variable name different than the one passed into the function
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-27 16:49:25 -08:00
Josh Hursey
2e64bf42fb Merge pull request #2810 from jjhursey/fix/ibm/stdiag-to-stdout
Extend options for stddiag routing
2017-01-26 14:29:16 -06:00
Josh Hursey
770c41f493 Merge pull request #2807 from jjhursey/fix/ibm/event-external
libevent/external: Add opal_event_include to this component
2017-01-26 14:26:50 -06:00
Jeff Squyres
2c277a66fd Merge pull request #2772 from jjhursey/topic/stacktrace-improv
master: opal/stacktrace improvements
2017-01-26 10:48:41 -08:00
Joshua Hursey
6d98559be9 stacktrace: Add flexibility in stacktrace ouptut
- New MCA option: opal_stacktrace_output
   - Specifies where the stack trace output stream goes.
   - Accepts: none, stdout, stderr, file[:filename]
   - Default filename 'stacktrace'
     - Filename will be `stacktrace.PID`, or if VPID is available,
       then the filename will be `stacktrace.VPID.PID`
 - Update util/stacktrace to allow for different output avenues
   including files. Previously this was hardcoded to 'stderr'.
 - Since opal_backtrace_print needs to be signal safe, passing it a
   FILE object that actually represents a file stream is difficult. This
   is because we cannot open the file in the signal handler using
   `fopen` (not safe), but have to use `open` (safe). Additionally, we
   cannot use `fdopen` to convert the `int fd` to a `FILE *fh` since it
   is also not signal safe.
   - I did not want to break the backtrace.h API so I introduced a new
     rule (documented in `backtrace.c`) that if the `FILE *file`
     argument is `NULL` then look for the `opal_stacktrace_output_fileno`
     variable to tell you which file descriptor to use for output.

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-01-26 11:55:32 -06:00
Nathan Hjelm
fe1c6bd881 Merge pull request #2840 from hjelmn/event_fix
verbs: remove extra event user increment/decrement operation
2017-01-26 07:30:24 -08:00
Gilles Gouaillardet
896434b1bd pmix/ext2x: plug a memory leak in opal_lkupcbfunc()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-26 14:07:15 +09:00
Gilles Gouaillardet
6b8e1c217c pmix/ext2x: plug misc memory leaks
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-26 14:06:58 +09:00
Nathan Hjelm
9f28c0af39 verbs: remove extra event user increment/decrement operation
Since the oob and connections systems do not work the same way they
did in older versions of Open MPI these operations are no longer
necessary. At best they do nothing and at worst they hurt performance
by making us enter the event library more often in opal_progress().

Fixes #2839

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-01-25 18:37:06 -07:00
Gilles Gouaillardet
142b95df87 pmix/ext2x: plug misc memory leaks regarding opal_pmix2x_event_chain_t handling
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-25 16:17:10 +09:00
Gilles Gouaillardet
7a3d39f079 pmix/ext2x: plug a memory leak in _reg_nspace()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-25 16:17:01 +09:00
Joshua Hursey
dcd9801f7c orte/iof: Add orte_map_stddiag_to_stdout option
* Similar to `orte_map_stddiag_to_stderr` except it redirects `stddiag`
   to `stdout` instead of `stderr`.
 * Add protection so that the user canot supply both:
   - `orte_map_stddiag_to_stderr`
   - `orte_map_stddiag_to_stdout`

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-01-24 16:22:59 -06:00
Joshua Hursey
d6b306d716 libevent/external: Add opal_event_include to this component
* Adds a parameter to adjust the method used by libevent.
   - Matches that of the libevent2022 component.

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-01-24 16:03:09 -06:00
Ralph Castain
ef86707fbe Deprecate the --slot-list paramaeter in favor of --cpu-list. Remove the --cpu-set param (mark it as deprecated) and use --cpu-list instead as it was confusing having the two params. The --cpu-list param defines the cpus to be used by procs of this job, and the binding policy will be overlayed on top of it.
Note: since the discovered cpus are filtered against this list, #slots will be set to the #cpus in the list if no slot values are given in a -host or -hostname specification.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-24 13:33:22 -08:00
Josh Hursey
c6595c2289 Merge pull request #2792 from jjhursey/topic/libevent-conf2
libevent2022: Fix broken configure AC_LANG_PROGRAM
2017-01-24 08:31:46 -06:00
Gilles Gouaillardet
682f5116aa Merge pull request #2781 from ggouaillardet/topic/misc_fixes_and_plugs
fix misc bugs and plug misc memory leaks
2017-01-24 14:41:45 +09:00
Joshua Hursey
72ac812039 libevent2022: Fix broken configure AC_LANG_PROGRAM
* Similar to commit 029964a748
   This removes an extra `int main` during configure.

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-01-23 21:47:59 -06:00
Gilles Gouaillardet
189da7fdab pmix2x: plug a memory leak in _event_hdlr()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-24 09:13:30 +09:00
Gilles Gouaillardet
acbc32d3b2 pmix2x: plug a memory leak in opal_lkupcbfunc()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-24 09:13:29 +09:00
Gilles Gouaillardet
b5b21043c4 pmix2x: plug a memory leak in _reg_nspace()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-24 09:13:29 +09:00
Gilles Gouaillardet
0f47310a75 pmix2x/pmix2x_client: plug misc memory leaks
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-24 09:13:29 +09:00
Joshua Hursey
029964a748 libevent2022: Fix broken configure AC_LANG_PROGRAM
* The AC_LANG_PROGRAM macro adds the `main()` so it is erroneous
   to add it to the test program.
 * This was detected with the XL compilers which will fail to
   build the program in this situation. The GNU compiler does not
   error out or warn, but successfully compiles the program.

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-01-23 13:44:12 -06:00
Ralph Castain
8c960bae8d Update to latest PMIx master
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-23 07:07:40 -08:00
George Bosilca
999d4973a9
Fix an issue with extremely large data identified by tjb900.
Due to the conversion from ssize_t to int we were losing bytes, and
ended up writing outside the receiver buffer. Similarly on the send,
due to the conversion to a lesser type, we could missinterpret the
end of the fragment.
2017-01-18 10:33:12 -05:00
Nathan Hjelm
91c34c8df6 Merge pull request #2703 from hjelmn/rcache_fix
rcache/base: do not release vma stuctures in vma_tree_delete
2017-01-12 09:53:34 -07:00
Jeff Squyres
938ab01ad6 Merge pull request #2714 from hjelmn/timer_rollover
timer/linux: prevent 64-bit overflow
2017-01-12 06:40:52 -05:00
Nathan Hjelm
45c05880aa timer/linux: prevent 64-bit overflow
The linux timer code was multiplying the result of the x86 time stamp
counter by 1000000 before dividing by the cpu frequency. This can
cause us to overflow 64 bits if the time stamp counter grows larger
than ~ 1.8e13 (about 8400 seconds after boot). To fix the issue the
units of opal_timer_linux_freq have been changed to MHz.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-01-11 20:03:10 -07:00
Gilles Gouaillardet
aeee48357a btl/sm: correctly handle nodes with zero NUMA hwloc object
the hwloc topology might not contain a NUMA object with hwloc < v2
if the node is not NUMA, so force the NUMA object count to one
in order to correctly allocate mca_btl_sm_component.sm_mpools.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-12 11:45:29 +09:00
George Bosilca
c2cd717f82 Don't refcount the predefined datatypes.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2017-01-11 16:48:59 -05:00
Ralph Castain
31a8476223 Merge pull request #2702 from rhc54/topic/cov
Silence Coverity CID 1398541
2017-01-10 17:50:23 -08:00
Nathan Hjelm
79cabc92fd rcache/base: do not release vma stuctures in vma_tree_delete
This commit fixes a deadlock that can occur when the libc version
holds a lock when calling munmap. In this case we could end up calling
free() from vma_tree_delete which would in turn try to obtain the lock
in libc. To avoid the issue put any deleted vma's in a new list on the
vma module and release them on the next call to vma_tree_insert. This
should be safe as this function is not called from the memory hooks.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-01-10 16:58:07 -07:00
Ralph Castain
e568b211e4 Silence Coverity CID 1398541
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-10 15:30:50 -08:00
Jeff Squyres
b980e334dc usnic: add completion stats
This should probably not go to the v2.x branch, since it changes the
output format of the usnic stats.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-01-10 12:06:54 -08:00
Jeff Squyres
706f53bb01 usnic: ensure that stats string is always truncated
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-01-10 12:06:54 -08:00
Jeff Squyres
1fdd0fe228 usnic: add missing params to show_help() call
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-01-10 12:06:54 -08:00
Jeff Squyres
7048adec04 usnic: add some assert()s
Add some run-time assert checks for debug builds.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-01-10 12:06:32 -08:00
Jeff Squyres
2d28ccb5fd usnic: add verbose output of queue lengths
Show the actual RX/TX and CQ length returned by libfabric in verbose
output.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-01-10 12:06:32 -08:00
Jeff Squyres
bd5b8ed754 usnic: ensure that queues are long enough
Double check the queue lengths that we get back from libfabric to
ensure that they are at least as long as we need.  They *should* never
be shorter than we need, but let's just check to be sure.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-01-10 12:06:32 -08:00
Jeff Squyres
53dc75a89c usnic: ensure to reset flags on returned frags
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-01-10 12:06:31 -08:00
Jeff Squyres
c4d7876ca0 usnic: check send credits on data channel for data frags
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-01-10 12:06:31 -08:00
Jeff Squyres
879d25e5df usnic: ensure to check send credits for ACKs
Don't just blindly send ACKs; ensure that we have send credits before
doing so.  If we don't have any send credits, just don't send the ACK
(it'll come again soon enough; it's not a tragedy if we don't send it
now).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-01-10 12:06:31 -08:00
Jeff Squyres
7787dad4db usnic: ensure CQs are long enough
The libfabric usnic provider may give you back TX/RX queues that are
longer than you asked for.  So just use the TX/RQ/CQ lengths that we
asked for, regardless of what length comes back.

Additionally, keep the length of the priority channel CQ separate from
the length of the data CQ.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-01-10 12:03:53 -08:00
Jeff Squyres
b02d8c48f5 usnic: make the releasing safer
Since the usnic BTL is single-threaded in this area, there really is
no danger, but don't use one of the pointers hanging off the frag
after we return it to the freelist.  Instead, save the endpoint
pointer before returning the frag.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-01-10 12:03:53 -08:00
Jeff Squyres
e25b860627 usnic: clarify types
The types are technically typedef equivalent, but it's less confusing
to use the types that agree with the name of the constructor.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-01-10 12:03:53 -08:00
Jeff Squyres
40fe575132 usnic: trivial updates (no code/logic changes)
- Add more explanatory comments
- Trivial whitespace / style updates
- Rename opal_btl_usnic_force_retrans() -> opal_btl_usnic_fast_retrans()

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-01-10 10:40:02 -08:00
Gilles Gouaillardet
6d59b476de Merge pull request #2686 from ggouaillardet/topic/pmix2x_ptl_base_sendrecv
pmix2x: ptl/base: send header and message data together via writev()
2017-01-10 16:26:10 +09:00
Gilles Gouaillardet
44c1ff60f1 Merge pull request #2672 from ggouaillardet/topic/misc_memory_leaks
Plug misc memory leaks
2017-01-10 13:16:04 +09:00
Gilles Gouaillardet
a01960bee5 pmix2x: ptl/base: send header and message data together via writev()
on Linux, sending the header and then the message data does severely
impact performances of ptl/tcp :
on the receiver, reading the data can often result in an PMIX_ERR_RESOURCE_BUSY
or PMIX_ERR_WOULD_BLOCK, which ends up degrading performances)
this commit send both header and message data at the same time via writev()
and makes ptl/tcp virtually as efficient as ptl/usock.

Short writev generally occur when the kernel buffer is full, so there is no
point for retrying in this case.

fwiw, no such degradation was observed on OSX.

Refs open-mpi/ompi#2657

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-10 13:07:39 +09:00
Nathan Hjelm
d6bd69dc93 mca/base: account for NULL string_value in verbose set
The MCA variable code calls the string from value function with a NULL
string to verify values. The verbosity enumerator was not correctly
checking for a non-NULL value before trying to set the string.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-01-09 11:52:31 -07:00
Ralph Castain
67fce2861b Merge pull request #2685 from rhc54/topic/cov
Resolve Coverity issues
2017-01-07 13:11:40 -08:00
Ralph Castain
e25e69dc2f Resolve Coverity issues
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-07 10:45:52 -08:00
George Bosilca
cfeeecd381 Remove the tcp_local field from the TCP component.
Instead use the OPAL process name to get the name
of the local process.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2017-01-07 13:24:18 -05:00
Ralph Castain
822e2680ba Cleanup some configure stuff for static builds - still can't get wrapper extra libs to be recognized
Signed-off-by: Ralph Castain <rhc@open-mpi.org>

pmix2x: minor configure updates

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-01-07 08:37:36 -08:00
Ralph Castain
444f5fa35d Raise the priority of the usock component so it gets preferentially picked
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-05 22:53:04 -08:00
Gilles Gouaillardet
c2ddb1e2fc mca/base: plug a memory leak
register mca_base_var_enum_value_flag_t so they can be free'd
upon finalize

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 13:46:36 +09:00
Gilles Gouaillardet
6d5cb9fe0d event: plug a leak when closing the event framework
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 13:46:35 +09:00
Gilles Gouaillardet
6ef281e163 pmix/base: fix misc memory leaks
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 13:46:35 +09:00
Gilles Gouaillardet
a59dfd7b14 sec/munge: plug a memory leak
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 13:46:35 +09:00
Gilles Gouaillardet
c612499bc1 opal: mca/base: fix a memory leak in the mca_base_var_enum_flag_t destructor
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 11:35:59 +09:00
Gilles Gouaillardet
7e5da7382e btl/tcp: plug leaks when closing component
remove tcp_local from the tcp_procs table, and release it

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 11:35:59 +09:00
Gilles Gouaillardet
507623d6b1 mpool/hugepage: plug a memory leak on finalize
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 11:35:58 +09:00
Gilles Gouaillardet
51021028d6 mpool/base: plug a memory leak on finalize
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-01-06 11:35:58 +09:00
Ralph Castain
6509f60929 Complete the memprobe support. This provides a new scaling tool called "mpi_memprobe" that samples the memory footprint of the local daemon and the client procs, and then reports the results. The output contains the footprint of the daemon on each node, plus the average footprint of the client procs on that node.
Samples are taken after MPI_Init, and then again after MPI_Barrier. This allows the user to see memory consumption caused by add_procs, as well as any modex contribution from forming connections if pmix_base_async_modex is given.

Using the probe simply involves executing it via mpirun, with however many copies you want per node. Example:

$ mpirun -npernode 2 ./mpi_memprobe
Sampling memory usage after MPI_Init
Data for node rhc001
	Daemon: 12.483398
	Client: 6.514648

Data for node rhc002
	Daemon: 11.865234
	Client: 4.643555

Sampling memory usage after MPI_Barrier
Data for node rhc001
	Daemon: 12.520508
	Client: 6.576660

Data for node rhc002
	Daemon: 11.879883
	Client: 4.703125

Note that the client value on node rhc001 is larger - this is where rank=0 is housed, and apparently it gets a larger footprint for some reason.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-05 10:32:17 -08:00
Ralph Castain
91d714fe93 Add flags to direct PMIx to only use one listener, but without directing which one (tcp or usock) to use. This allows the user to set PMIX_MCA_ptl in their environment to select the transport method.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-04 09:16:44 -08:00
Ralph Castain
f355fb926d Continue cleanup of notifications. Resolve a race condition that can result in attempt to send a message on a closed socket
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-04 09:16:33 -08:00
Ralph Castain
9eab9a1ed3 Remove stale global variables
Revamp the event notification integration to rely on the PMIx event chaining and remove the duplicate chaining in OPAL. This ensures we get system-level events that target non-default handlers.

Restore the hostname entries for MPI-level error messages, but provide an MCA param (orte_hostname_cutoff) to remove them for large clusters where the memory footprint is problematic. Set the default at 1000 nodes in the job (not the allocation).

Begin first cut at memory profiler

Some minor cleanups of memprobe

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-02 14:04:24 -08:00
Ralph Castain
e8aea2ebfc Minor cleanups
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-30 16:19:42 -08:00
Ralph Castain
08c76a42bb Update to latest PMIx master
Signed-off-by: Ralph Castain <rhc@open-mpi.org>

Plug a minor memory leak. Tell the PMIx server not to create a dstore memory region for the daemon job as there is nobody to share it with.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>

Protect users of hwloc membind functions

Signed-off-by: Ralph Castain <rhc@open-mpi.org>

Update PMIx to include NULL string protection

Signed-off-by: Ralph Castain <rhc@open-mpi.org>

Update to PMIx master to include key overwrite protection

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-30 12:44:47 -08:00
Ralph Castain
fe68f23099 Only instantiate the HWLOC topology in an MPI process if it actually will be used.
There are only five places in the non-daemon code paths where opal_hwloc_topology is currently referenced:

* shared memory BTLs (sm, smcuda). I have added a code path to those components that uses the location string
  instead of the topology itself, if available, thus avoiding instantiating the topology

* openib BTL. This uses the distance matrix. At present, I haven't developed a method
  for replacing that reference. Thus, this component will instantiate the topology

* usnic BTL. Uses the distance matrix.

* treematch TOPO component. Does some complex tree-based algorithm, so it will instantiate
  the topology

* ess base functions. If a process is direct launched and not bound at launch, this
  code attempts to bind it. Thus, procs in this scenario will instantiate the
  topology

Note that instantiating the topology on complex chips such as KNL can consume
megabytes of memory.

Fix pernode binding policy

Properly handle the unbound case

Correct pointer usage

Do not free static error messages!

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-29 10:33:29 -08:00
Ralph Castain
3a2d6a5ab6 Begin to reduce reliance of application procs on the topology tree itself by having the daemon provide more detailed info. In this case, provide the topology description string so that procs can readily determine the number of types of objects on the node, and a "locality" string that describes which objects this process is executing upon. The latter allows a process to compute the objects of overlap between itself and another proc without consulting the topology tree.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-28 09:14:26 -08:00
Ralph Castain
d3aa3777f3 Per @jsquyres: avoid mangling user-provided CFLAGS by using the new PMIX_FLAGS_UNIQ autoconf script in place of PMIX_UNIQ
Refs #2636

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-27 09:00:59 -08:00
Gilles Gouaillardet
22db1d36b6 pmix2x: silence misc warnings
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2016-12-26 13:35:17 +09:00
Nysal Jan K A
19e3be31e5 Merge pull request #2421 from nysal/master
mpit: Fix MPI_T_pvar_get_index
2016-12-22 15:33:51 +05:30
Gilles Gouaillardet
54c84196a6 btl/vader: plug a memory leak
as reported by Coverity with CID 1362691

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2016-12-22 16:04:36 +09:00
Nysal Jan K.A
25ba507ada mpit: Fix MPI_T_pvar_get_index
MPI_T_pvar_get_index was returning an incorrect index. The index
was never set correctly while registering the performance variables.
Additionally fix a missing case in the mca_base_var_type_t to MPI
datatype conversion. This type is currently used for control variables
registered by mxm, fca and hcoll components.

Signed-off-by: Nysal Jan K.A <jnysal@in.ibm.com>
2016-12-22 12:30:21 +05:30
Jeff Squyres
3571c3c5bb hwloc external: minor fixes to 9649c44
- Fix capitolization typos
- Make comment more correct / flow better
- Use AM_CPPFLAGS, not DEFAULT_INCLUDES
- Remove extra "hwloc/" from external hwloc.h specification

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-12-21 09:06:24 -08:00
Gilles Gouaillardet
9649c44fa0 hwloc: correctly handle --with-hwloc=external
- simply #include "hwloc.h" to use the external hwloc header
- do use the external hwloc header instead of opal/mca/hwloc/hwloc.h

Thanks Orion Poplawski for the report

Fixes open-mpi/ompi#2616

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2016-12-21 11:58:10 +09:00
Ralph Castain
ea133206ec Sync the internal OMPI component to PMIx master
Update external PMIx v2.x component
Add missing Makefile

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-19 19:14:16 -08:00
Ralph Castain
256b5adac5 Transfer across final fixes from debugger attach work
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-19 00:34:27 -08:00
Ralph Castain
c6f6f40529 Transfer debugger support changes
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-17 18:14:46 -08:00
rhc54
54c4925f3f Merge pull request #2598 from rhc54/topic/debugger
Transfer back changes from debugger attach work
2016-12-17 13:09:38 -08:00
Nathan Hjelm
16a2f09cd5 Merge pull request #2596 from hjelmn/x86_rtdtsc
opal/timer: add code to check if rtdtsc is core invariant
2016-12-17 11:14:49 -07:00
Ralph Castain
269753f5c1 Transfer back changes from debugger attach work
Silence warning

Remove debug

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-17 10:00:52 -08:00
Ralph Castain
215d6290e0 Add a flux component for LLNL
Fine tuning of flux component
Fix a few minor issues with the initial cut:
* Job id could be obtained from the PMI kvsname like SLURM,
  but simpler to getenv (FLUX_JOB_ID)
* Flux pmi-1 doesn't define PMI_BOOL, PMI_TRUE, PMI_FALSE
* Flux pmi-1 maps the deprecated PMI_Get_kvs_domain_id() to
  PMI_KVS_Get_my_name() internally, so just call that instead.
* Drop residual slurm references.

Add wrappers for PMI functions so that if HAVE_FLUX_PMI_LIBRARY
is not defined, the component can dlopen libpmi.so at location
specified by the FLUX_PMI_LIBRARY_PATH env variable, which adds
flexibility.  If HAVE_FLUX_PMI_LIBRARY is defined, link with
libpmi.so at build time in the usual way.

Update configury for flux component

Update m4 so the configure options work as follows:

 --with-flux-pmi
      Build Flux PMI support (default: yes)

 --with-flux-pmi-library
      Link Flux PMI support with PMI library at build
      time. Otherwise the library is opened at runtime at
      location specified by FLUX_PMI_LIBRARY_PATH environment
      variable. Use this option to enable Flux support when
      building statically or without dlopen support (default: no)

If the latter option is provided, the library/header is located at
build time using the pkg-config module 'flux-pmi'.  Otherwise there
is no library/header dependency.

Handle the case where ompi is configured with --disable-dlopen
or --enable-statkc.  In those cases, don't build the component
unless --with-flux-pmi-library is provided.

It is fatal if the user explicitly requests --with-flux-pmi but
it cannot be built (e.g. due to --disable-dlopen).

Add a schizo/flux component

Update schizo/flux component

Eliminate slurm-specific usage cases.

Since the module is only loaded if FLUX_JOB_ID is set, there are
only two cases to handle:

1) App was launched indirectly through mpirun.  This is not yet
supported with Flux, but hook remains in case this mode is supported
in the future.

2) App was launched directly by Flux, with Flux providing
CPU binding, if any.

Fix up white space in pmix/flux component

Drop non-blocking fence from pmix:flux component

The flux PMI-1 library is not thread safe, therefore
register a regular blocking fence callback instead of the
thread-shifting fencenb().

pmix/flux component avoids extra PMI_KVS_Gets

Keys stored into the base cache under the wildcard
rank are not intended to be part of the global key namespace.
These keys therefore should not trigger a PMI_KVS_Get() if they
are not found in the cache.

Minor pmix/flux component cleanup

pmix/flux: drop code for fetching unused pmix_id

pmix/flux: err_exit must return error

Problem: in flux_init(), although 'ret' (variable holding
err_exit return code) is initialized to OPAL_ERROR, the
variable is reused as a temporary result code, so if there are
some successes followed by a failure that doesn't set 'ret',
flux_init() could return success with PMI not initialized.

Ensure that a "goto err_exit" returns OPAL_ERROR if 'ret'
is not set to some other error code.

pmix/flux: don't mix OPAL_ and PMI_ return codes

Problem: flux_init() can return both PMI_ and OPAL_ return
codes.  Although OPAL_SUCCESS and PMI_SUCCESS are both defined
as 0, other codes are not compatible.

Ensure that flux_init() consistently uses 'rc' for PMI_
return codes and 'ret' for OPAL_ return codes.

pmix/flux: factor out repeated code for cache put

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-16 18:26:38 -08:00
Nathan Hjelm
a718743a5c opal/timer: add code to check if rtdtsc is core invariant
Newer x86 processors have a core invariant tsc. On these systems it is
safe to use the rtdtsc instruction as a monotonic timer. This commit
adds a new function to the opal timer code to check if the timer
backend is monotonic. On x86 it checks the appropriate bit and on
other architectures it parrots back the OPAL_TIMER_MONOTONIC value.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-12-16 15:11:50 -07:00
rhc54
00b87ea829 Merge pull request #2584 from rhc54/topic/warnings
Reduce the flood of warnings due to uninitialized variables, mismatch…
2016-12-15 10:09:01 -08:00
Ralph Castain
585540bcee Reduce the flood of warnings due to uninitialized variables, mismatched types, and unused things to a more bearable trickle
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-14 16:33:50 -08:00
Gilles Gouaillardet
a019095b84 pmix2x/class: correctly handle concurrent class initialization
(back-ported from upstream commit pmix/master@ceedbd67fd)

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2016-12-15 09:07:24 +09:00
Ralph Castain
884fb7fcf2 Update the PMIx2 support to include the latest shared memory optimizations
Update ORTE support for dynamic PMIx operations e.g., PMIx_Spawn
Update to track master
Ensure that --disable-pmix-dstore actually disables the dstore. Sync to a few debugger updates

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-14 15:00:10 -08:00
Ralph Castain
1961a1c22a Use the server tmpdir instead of the system tmpdir for tool contact files
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-14 08:42:09 -08:00
Ralph Castain
fbed2d794a Update to latest PMIx master + PTL branch
Update the usock component to disable it

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-06 20:47:44 -08:00
Ralph Castain
d51821cbc7 Update pmix check headers to support Open BSD
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-06 19:37:06 -08:00
Ralph Castain
f91f8ce494 Protect against NULL param
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-03 21:19:32 -08:00
Ralph Castain
f633d5c1b1 Initialize var
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-03 21:08:45 -08:00
rhc54
003f7d308f Merge pull request #2504 from hppritcha/topic/fix_pmix_base_help_file
pmix: Fix pmix base help file.
2016-12-03 11:57:07 -08:00
Ralph Castain
a43fae74a5 Avoid hanging in show_help if PMIx was unable to initialize
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-03 10:12:58 -08:00
Ralph Castain
a4e3f615e3 Fix executable modes of pmix config scripts
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-02 20:50:59 -08:00
Ralph Castain
342dbfcf4e Update
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-02 20:33:03 -08:00
Ralph Castain
8e64382edf Update to correct tarball
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-02 19:16:07 -08:00
Ralph Castain
1a0bccb536 Now that PMIx has settled on its release strategy and numbering, update the OPAL pmix framework to track
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-02 15:44:43 -08:00
Howard Pritchard
3049848731 Fix pmix base help file.
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2016-12-02 15:03:22 -06:00
Ralph Castain
6041467df0 Update to latest PMIx master
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-12-01 14:47:44 -08:00
Gilles Gouaillardet
3a76a78bff btl/openib: plug a memory leak in btl_openib_register_mca_params()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2016-12-01 14:24:30 +09:00
Gilles Gouaillardet
c9aeccb84e opal/if: open the if framework once in opal_init_util
the if framework is no more open in opal_if*, which plugs
several memory leaks

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2016-12-01 14:24:30 +09:00
Gilles Gouaillardet
45732fd764 hwloc/base: fix a memory leak in buffer_cleanup()
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2016-12-01 14:24:29 +09:00
Howard Pritchard
7ce3ca25ef Merge pull request #2458 from hppritcha/topic/pmix_cray_no_dlopen
pmix/cray: abort job if using aprun for general case
2016-11-25 14:03:20 -07:00
Howard Pritchard
eee9f7ae3a pmix/cray: abort job if using aprun for general case
It turns that there is an incompatibility between the Cray PMI
library and the default configuration for building Open MPI (master).
To work around this, we now disable use of aprun for direct launch
of Open MPI jobs except under specific conditions.

The problem is that there are now (on master) packages getting
initialized that do not work properly across a fork operation.
As part of a constructor in the Cray PMI library, a fork operation
is done to simplify use of shared memory between the
processes in a job on the same node.  This ends up thoroughly
messing up the Open MPI initialization process in the case
that dlopen support is enabled.  The initialization process gets
about half-way through when the PMIX framework is opened and
components are loaded, which triggers the Cray PMI constructor
and hence the fork operation.

There are two workarounds for this:
1) configure Open MPI for Cray XE/XC systems using aprun with the
   --disable-dlopen option
2) set the PMI_NO_FORK environment variable in the shell in which
   the aprun command is run.

Without taking these measures, a Open MPI job will just hang at
job startup in the first attempt to "thread-shift" the PMIx
fence_nb operation.  Additional hangs occur at shutdown if this
problem is worked around, again due to the insertion of a fork
operation halfway through the Open MPI initialization procedure.

This commit detects if the conditions that bring out the hang
situation are present, and if so, prints out a message and
aborts the job launch.

Note on systems using slurm, the PMI_NO_FORK environment variable
is set as part of the srun job launch, hence this issue is avoided
on those systems.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2016-11-25 06:28:19 -07:00
Gilles Gouaillardet
1a279c4ee9 btl/self: fix fragment segment length in mca_btl_self_prepare_src()
opal_convertor_pack() might pack less bytes than requested,
so always set frag->segments[0].seg_len.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2016-11-24 10:44:56 +09:00
Howard Pritchard
2bb4cffffd Merge pull request #2447 from hppritcha/topic/compiler_warning_swats
btl/ugni:vader swat some compiler warnings
2016-11-22 05:28:20 -07:00
Howard Pritchard
09f47fcf8e btl/ugni:vader swat some compiler warnings
Swat some compiler warnings.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2016-11-21 14:58:34 -06:00
Howard Pritchard
2cbc0e8472 pmix/cray: fix disable-dlopen problem
PR open-mpi/ompi#2432 introduced a regression where configure
and build with --disable-dlopn caused build failure owing
to unresolved alps lli symbols in the libopal-pal shared library.

This commit fixes this problem.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2016-11-21 13:45:10 -06:00
Howard Pritchard
0bbb319246 Merge pull request #2444 from hppritcha/topic/cray_pmix_ws_cleanup
pmix/cray: whitespace cleanup
2016-11-21 06:03:56 -07:00
Howard Pritchard
08dce4f161 pmix/cray: whitespace cleanup
Get rid of tabs.  This is anti-ompi style.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2016-11-18 19:30:40 -07:00
Howard Pritchard
44f4663d0d Merge pull request #2432 from hppritcha/topic/fix_info_etc_w_alps
pmix/cray: set some envars for MPI_INFO_ENV object
2016-11-18 14:23:53 -07:00
Howard Pritchard
de3de131af pmix/cray: set some envars for MPI_INFO_ENV object
Enhance the cray pmix component to set some OMPI internal
env. variables used to set some key/value pairs
on the MPI_INFO_ENV object.  This allows more of the
ompi-tests ibm unit tests to pass when using aprun/srun
direct launch and Cray PMI.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2016-11-16 17:37:52 -06:00
Joshua Ladd
4907085c6f Add the ConnectX-5 device ID to openib BTL.
Signed-off-by: Joshua Ladd <jladd.mlnx@gmail.com>
2016-11-16 21:42:37 +02:00
Gilles Gouaillardet
8ef538adeb Merge pull request #2398 from bosilca/topic/tcp_endpoints_mutex
Protect the tcp_endpoints list from concurrent accesses.
2016-11-14 22:13:29 -07:00
Howard Pritchard
703b464c03 pmix: fix a typo in a help file
Fixes #2391

Thanks to @njoly for reporting

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2016-11-12 11:49:15 -07:00
George Bosilca
d0dddef53d
Protect the tcp_endpoints list from concurrent accesses.
Thanks Gilles for your help.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2016-11-11 00:06:03 -05:00
Gilles Gouaillardet
a49422fe84 btl/tcp: get rid of the MCA_BTL_TCP_SUPPORT_PROGRESS_THREAD macro
since pthreads are now mandatory, the MCA_BTL_TCP_SUPPORT_PROGRESS_THREAD
is always true and hence can be safely removed

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2016-11-08 14:00:05 +09:00
Aboorva Devarajan
fb8e074583 powerpc: Add support for powerpcle in timer/pstat.
Signed-off-by: Aboorva Devarajan <abodevar@in.ibm.com>
2016-11-07 02:35:44 -05:00
Gilles Gouaillardet
7a2894f1e0 event/libevent2022: cleanup dependencies to the embedded libevent lib
configury force event/libevent2022 to be built as a static module,
so simplify Makefile.am

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2016-11-07 14:57:52 +09:00
Gilles Gouaillardet
6f7ed1f552 event/libevent2022: add missing dependencies to the embedded libevent lib
force the libevent2022 component rebuild if the embedded libevent is updated

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2016-11-04 11:13:44 +09:00
Jeff Squyres
a4ffa590c8 Merge pull request #2308 from hjelmn/vader_mem
btl/vader: reduce memory footprint when using xpmem
2016-11-02 10:28:26 -04:00
Steve Wise
7050969d47 openib btl: remove BTL_OPENIB_FAILOVER_ENABLED code
Remove BTL_OPENIB_FAILOVER_ENABLED code in the openib btl source.

Remove the failover-specific files from the openib btl.

Update the openib/Makefile.am accordingly.

Remove the -enable-openib-failover config logic.

Signed-off-by: Steve Wise <swise@opengridcomputing.com>
2016-11-01 14:45:36 -07:00
Ralph Castain
64873487b4 Remove the max_connections parameter from the radix component as it is confusing. Modify PMIx client init so that it simply returns the nspace/rank if called by a server - this allows the server to retrieve its assigned ID. Register the server's nspace so client-side operations can succeed
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-11-01 12:17:11 -07:00
Jeff Squyres
149b660666 btl/usnic: fix compiler warning
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-10-28 07:36:20 -07:00
rhc54
698dac108b Merge pull request #2309 from rhc54/topic/pmix
Update to latest PMIx master - mostly updates example codes, but incl…
2016-10-27 14:21:46 -07:00
Ralph Castain
f4a55118e6 Update to latest PMIx master - mostly updates example codes, but includes one critical cleanup during finalize.
NOTE: set dstore shared memory storage option to "on" by default

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-10-27 11:16:03 -07:00
Nathan Hjelm
9d92075e60 btl/self: rewrite to decrease memory usage (#2307)
This commit rewrites much of the btl/self component to fix a long
standing memory usage bug. Before this commit the prepare_src path
would always allocate a max send fragment (256kB). This caused the
rank to allocate 32 * 256k useless buffers from one send. This commit
makes the following changes:

 - Add the MCA_BTL_FLAGS_GET flag by default. No reason not to set it.

 - Reduce the eager limit, max send size, buffers per allocation, and
   maximum buffer count per fragment size. These changes should have
   no noticible affect on performance but should greatly reduce the
   memory usage of the component.

 - Implement the sendi function. This should reduce self send latency
   somewhat.

 - Rewrite prepare_src to never allocate a eager or max send fragment
   for contiguous data.

 - add_procs needs to return something in the peer array for the proc
   self not just set the reachability bit. Now stores (void *) 1.

 - Various cleanups. Removed and unused file.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-10-27 12:34:54 -04:00
Nathan Hjelm
a652a193ea btl/vader: reduce memory footprint when using xpmem
The vader btl kept a per-peer registration cache to keep track of
attachments. This is not really a problem with small numbers of local
ranks but can be a problem with large SMP machines. To reduce the
footprint there is now one registration cache for all xpmem
attachments. This will probably increase the lookup time for large
transfers but is a worthwhile trade-off.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-10-27 10:09:43 -06:00
Ralph Castain
f298f294e1 Update PMIx to latest master tarball. Ensure we set the HNP name for orted's so that PMIx_Lookup can find the server
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-10-26 15:48:56 -07:00
Gilles Gouaillardet
f2a80dc09f configury: check libnl version and abort in case of conflict
libnl and libnl-3 are known to conflict with each other, so detect
and abort if these two libs are both used directly (e.g. Open MPI
uses libnl-3) or indirectly (e.g. libibverbs.so might depend on libnl)
2016-10-25 09:23:59 +09:00
Ralph Castain
649301a3a2 Revise the routed framework to be multi-select so it can support the new conduit system. Update all calls to rml.send* to the new syntax. Define an orte_mgmt_conduit for admin and IOF messages, and an orte_coll_conduit for all collective operations (e.g., xcast, modex, and barrier).
Still not completely done as we need a better way of tracking the routed module being used down in the OOB - e.g., when a peer drops connection, we want to remove that route from all conduits that (a) use the OOB and (b) are routed, but we don't want to remove it from an OFI conduit.
2016-10-23 21:52:39 -07:00
rhc54
900ae15d49 Merge pull request #2221 from bharatpotnuri/master
btl/openib: remove unwanted ompi header inclusion in opal code.
2016-10-21 14:05:55 -05:00
Ralph Castain
9131eca9c6 Update to latest PMIx master 2016-10-20 21:13:40 -07:00
Ralph Castain
be3197fe27 Ensure that the libevent headers are installed for external libevent when --with-devel-headers is given. Correct the path for opal_config.h in the external hwloc header 2016-10-20 20:57:50 -07:00
Ralph Castain
2f966bf3bf Cleanup external PMIx v3 component for copy/paste errors - component and module require unique names 2016-10-20 09:11:46 -07:00
Ralph Castain
8113a8d1b0 Now that we are hiding symbols in the internal PMIx component, we cannot reuse that component for integration to the external PMIx master as the symbols don't match. So create a new "ext3x" component and copy the PMIx v3 integration over there.
Also, remove a couple of build-product files from the pmix3x component.
2016-10-18 13:15:32 -07:00
Ralph Castain
50c9f3de55 Ensure the PMIx progress thread is stopped prior to tearing anything down. Thanks to Gilles for spotting this error! 2016-10-18 00:27:52 -07:00
Gilles Gouaillardet
4e19cd51b1 hwloc/external: add a missing include file 2016-10-14 09:27:33 +09:00
Ralph Castain
6f65d0a173 Repair event notification support. Cleanup the long-suffering "epoll: warning" coming out of libevent whenever a process abnormally terminated.
Add changes to test program

Sync to PMIx master
2016-10-13 16:27:39 -07:00
Ralph Castain
6417f217e1 Turn PMIx dstore off by default as MTT was effectively broken 2016-10-13 08:14:51 -07:00
Potnuri Bharat Teja
29f1aa836f btl/openib: remove unwanted ompi header inclusion in opal code.
OMPI header cannot be included in OPAL source code, hence removed it.
Fixes: (740b636db) btl/openib: Disqualify rdmacm CPC if
MPI_THREAD_MULTIPLE.

Signed-off-by: Potnuri Bharat Teja <bharat@chelsio.com>
2016-10-13 16:21:36 +05:30
Ralph Castain
8f05beb1ec Sync pmix/master@cb53105 2016-10-11 20:54:59 -07:00
rhc54
ad156e3e91 Merge pull request #2207 from rhc54/topic/pmixupdate
Update PMIx support to latest PMIx master
2016-10-11 18:57:11 -05:00
Jeff Squyres
bcbf0bc4f9 usnic: s/OMPI/OPAL/
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-10-11 16:43:35 -07:00
Ralph Castain
6ce4b6d098 Eliminate -Wall from being hardcoded 2016-10-11 12:50:31 -07:00
Ralph Castain
1859b03416 Enable PMIx shared memory support by default 2016-10-11 12:18:01 -07:00
Ralph Castain
1d7d7c201b Update PMIx support to latest PMIx master 2016-10-11 10:17:23 -07:00
Ralph Castain
5b1484a836 Implement the backend support for process-generated event notification 2016-10-08 09:24:28 -07:00
Gilles Gouaillardet
b55dd2442a libevent2022: rename _event_strlcpy 2016-10-08 16:58:20 +09:00
Gilles Gouaillardet
c92e9a5406 use the new OPAL_HASH_TABLE_FOREACH convenience macro 2016-10-08 16:58:20 +09:00
Gilles Gouaillardet
f1f1fb15eb pmix3x: configury: output major, minor and release version after checking them
and hence fix the configure output

(back-ported from upstream commit pmix/master@7b7cdda2de)
2016-10-08 13:01:28 +09:00
Gilles Gouaillardet
f3af799608 pmix3x: misc fixes to get pmix build on Solaris
- replace MAXHOSTNAMELEN with hardcoded 1024.
  unlike Linux, Solaris #define MAXHOSTNAMELEN in <netdb.h>,
  so use a hard coded value to keep the test simpl
- stdout cannot be assigned on Solaris, so use freopen instead

(back-ported from upstream commit pmix/master@a63f6e53f4)
2016-10-08 13:01:28 +09:00
Gilles Gouaillardet
5cbfddb8f1 pmix3x: fix misc memory leaks
(back-ported from upstream commit pmix/master@1eff526929)
2016-10-08 13:01:28 +09:00
Gilles Gouaillardet
b4e4e4a5f1 pmix3x: enhance pmix_nspace_t destructor
PMIX_RELEASE all elements stored in the internal and modex hash tables

(back-ported from upstream commit pmix/master@b90674fc52)
2016-10-08 13:01:27 +09:00
Gilles Gouaillardet
f1dc033767 pmix3x: add the PMIX_HASH_TABLE_FOREACH macro
this is a convenience macro similar to the PMIX_LIST_FOREACH macro,
that can be used to iterate on all the key/value pairs of a pmix_hash_table_t

(back-ported from upstream commit pmix/master@349971c68c)
2016-10-08 13:01:27 +09:00
Jeff Squyres
67684be7c9 usnic: fix one last stray fabric_attr->name --> linux_device_name
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-10-04 18:17:38 -07:00
Jeff Squyres
8b77359cac usnic: remove some legacy libfabric 1.0/1.1 code
We only support running with libfabric v1.3 or greater.  So it's safe
to remove the legacy/adaptive cq_readerr() behavior.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-10-03 11:59:41 -07:00
Jeff Squyres
345c07a252 usnic: require libfabric >= v1.3 at run time
There are critical usnic libfabric AV insert bugs before v1.3, so
don't allow any version prior to v1.3 at run time (still allow
*compiling* with earlier versions, though, since the ABI guarantees
allow us to compile with an earlier libfabric and run with a later
libfabric).

Switch to using fi_version() to check the version (instead of calling
fi_getinfo()) as a potentially lighter-weight / simpler solution.
This allows us to only call fi_getinfo() once.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-10-03 11:59:41 -07:00
Jeff Squyres
b13813810f usnic: print a helpful message invoke PML error callback
The previous message was unhelpful / confusing.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-10-03 11:59:41 -07:00
Gilles Gouaillardet
7601e783cc pmix3x: sec/munge: add a missing include file
(cherry picked from upstream pmix/master@f7cfb11f6b)
2016-10-03 16:09:10 +09:00
Ralph Castain
e773c17cf3 Put show_help thru the PMIx "log" API. This pushes the show_help output from apps into the pmix thread, thus avoiding conflicts in the RML thread, which should help with thread lock situations. 2016-10-02 16:02:23 -07:00
Jeff Squyres
545d8f2e66 usnic cagent: correctly compute the "large" ping message size
The (effective) "+42" computation was, in fact, the incorrect answer
in this case (gasp!).

We should just take the max_msg_size from the command (which came from
the libfabric endpoint max_msg_size attribute in the client) and
subtract off the max header size: 68 (which is explained in the
comment).  This will result in a "large" message size which is likely
slightly smaller than the MTU, but still right up near the MTU, and
therefore good enough.

Note: the old computation (i.e., -(68-42)) worked fine when we asked
for Libfabric API v1.1 because the usnic provider would return a
max_msg_size that was already less than the MTU due to FI_PREFIX
behavior shenanigans.  Once we started asking for Libfabric API v1.4,
the usnic Libfabric provider started returning (MTU + prefix_size),
and the -(68-42) computation started giving a value that was over the
MTU.  This caused sendto() on the connectivity checker UDP socket
to fail.

This commit also removes an old/misleading comment.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-09-30 17:01:05 -07:00
Joshua Hursey
f6f24a4f67 build: Custom libmpi(_FOO) name option in configure
* Add a configure time option to rename libmpi(_FOO).*
   - `--with-libmpi-name=STRING`
 * This commit only impacts the installed libraries.
   Internal, temporary libraries have not been renamed to limit the
   scope of the patch to only what is needed.

For example:
```shell
shell$ ./configure --with-libmpi-name=wookie
...
shell$ find . -name "libmpi*"
shell$ find . -name "libwookie*"
./lib/libwookie.so.0.0.0
./lib/libwookie.so.0
./lib/libwookie.so
./lib/libwookie.la
./lib/libwookie_mpifh.so.0.0.0
./lib/libwookie_mpifh.so.0
./lib/libwookie_mpifh.so
./lib/libwookie_mpifh.la
./lib/libwookie_usempi.so.0.0.0
./lib/libwookie_usempi.so.0
./lib/libwookie_usempi.so
./lib/libwookie_usempi.la
shell$
```
2016-09-29 21:47:24 -05:00
Gilles Gouaillardet
871ade9231 pmix/{cray,s1,s2}: make pmi_opcaddy_t class static
theses three pmix components use the same class name,
declare it as static so Open MPI can be built with --disable-dlopen

Thanks Limin Gu for the report
2016-09-28 09:18:36 +09:00
Jeff Squyres
1a5a5fb400 Merge pull request #1861 from bharatpotnuri/master
btl/openib: Disqualify rdmacm CPC if MPI_THREAD_MULTIPLE
2016-09-27 13:03:35 -04:00
Potnuri Bharat Teja
740b636dbe btl/openib: Disqualify rdmacm CPC if MPI_THREAD_MULTIPLE
The rdmacm CPC in the openib BTL is not thread safe. The rdmacm CPC
should disqualify itself (instead of failing in random ways) if
MPI_THREAD_MULTIPLE is the thread level.

Signed-off-by: Potnuri Bharat Teja <bharat@chelsio.com>
2016-09-27 14:20:59 +05:30
Gilles Gouaillardet
1fbc9a5431 pmix3x: dstore/pmix: flock portability
Using the fcntl-locking instead of the flock

(back-ported from upstream pmix/master@3030a0cca1)
2016-09-27 13:21:03 +09:00
George Bosilca
066370202d Support non-monotonic assembly timers.
If monotonic support has been required by the runtime and the
assembly timers are unable to provide it, fall back to clock_gettime.
2016-09-23 21:51:34 -04:00
George Bosilca
45dcf1f5d7 Always use the best timer available
If we have better timer than clock_gettime use it, even if it an
assembly timer.
2016-09-23 19:32:58 -04:00
George Bosilca
93fa94f96f Re-enable support for local addresses.
This patch is based on the "RFC: Reenabling the TCP BTL over local
interfaces (when specifically requested)". It removes the hardcoded
exception for the local devices that has been enforced by the
TCP BTL. Instead, we exclude the local interface only via the
exclude MCA (both IPv4 and IPv6 local addresses are already in the
default if_exclude), which is also the behavior currently described in
our README file.
2016-09-23 13:04:33 -04:00
Gilles Gouaillardet
362a5886de pmix3x: client: fix PMIx_Finalize() sequence
pmix_progress_thread_finalize() invokes libevent event_base_free,
so all libevent stuff cannot be used after.
Hence, pmix_client_globals.myserver must be PMIX_DESTRUCT'ed
before invoking pmix_progress_thread_finalize()
2016-09-24 00:01:23 +09:00
Gilles Gouaillardet
5479c6cca7 pmix3x: add missing #include
and get Open MPI build on OpenBSD 6.0
2016-09-23 11:23:18 +09:00
Ralph Castain
a14ec3bdbc Mucho thanks to Gilles - his patch to reorder the CPPFLAGS solves the problem of inadvertently picking up hwloc and libevent headers from locations in CPPFLAGS while continuing to build the embedded versions. Also silence a minor warning about an uninitialized var. 2016-09-22 07:39:22 -07:00
Gilles Gouaillardet
fbf03299c3 Merge pull request #2079 from ggouaillardet/topic/pmix_configury_dlopen
pmix3x: configury: correctly handle --disable-dlopen
2016-09-21 10:59:33 +09:00
Gilles Gouaillardet
6c1e25b76e pmix/ext11: fix pmix1_value_unload() prototype and call
pmix1_value_unload() was added a "key" argument which is unused,
and pmix1_value_unload() was sometimes invoked with two arguments instead of three.

since the "key" argument is unused, simply remove it from the
subroutine prototype and calls.
2016-09-20 14:34:41 +09:00
Gilles Gouaillardet
041a431966 pmix3x: configury: correctly handle --disable-dlopen
the LT_* macros do overwrite the enable_dlopen variable,
so it must be tested and saved before invoking LT_INIT.
delay the invokation of the LT_* macros and use the
PMIX_ENABLE_DLOPEN_SUPPORT variable to figure out whether
--disable-dlopen was invoked
2016-09-15 13:26:20 +09:00
Nathan Hjelm
a681837ba8 btl/tcp: fix double list remove
This commit fixes an abort during finalize because pending events were
removed from the list twice.

References #2030

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-09-13 09:23:12 -06:00
Artem Polyakov
9eba1b0b75 Merge pull request #2042 from artpol84/pmix_sdirs
Several fixes related to session directories:
2016-09-07 14:15:47 +07:00
Gilles Gouaillardet
cd2b5a82ed hwloc: plug memory leak
as reported by Coverity with CID 1270441
2016-09-07 10:08:44 +09:00
Jeff Squyres
527efec4fb Merge pull request #2050 from jsquyres/pr/btl-tcp-help-messages
Add a show_help message to TCP BTL when peer unexpectedly disconnects
2016-09-06 09:40:31 -04:00
Jeff Squyres
1953e3406f btl/tcp: add show_help message when peer hangs up
We commonly see messages on the users list where a peer has hung up
because it has crashed.  Instead of having just a BTL_ERROR message,
make this a real opal_show_help() message that tells the user that the
peer unexpectedly hung up, and they should look into *why* that peer
hung up.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-09-06 09:40:03 -04:00
Gilles Gouaillardet
4b208e4463 btl/tcp: make mca_btl_tcp_proc_insert re-entrant
otherwise bad things happen with
 --mca btl_tcp_progress_thread 1 (non default)
and
 --mca mpi_add_procs_cutoff 0 (default)
2016-09-05 15:57:34 +09:00
Artem Polyakov
dc0ab674de Add PMIx key to provide RM with ability to indicate that it will cleanup
session directories provided at through OPAL_PMIX_TMPDIR,
OPAL_PMIX_NSDIR, OPAL_PMIX_PROCDIR
2016-09-05 07:48:44 +03:00
Jeff Squyres
95c6f6cfc0 btl/tcp: fix help message
It looks like one help message was accidentally pasted in the middle
of another.  Disentangle the two messages from each other, and
slightly tweak the one message to say that the job may also crash (in
addition to hanging).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-09-02 17:14:22 -04:00
Nathan Hjelm
f93c1f2106 btl/ugni: fix erroneous warning message
This commit prevents the connection code from trying to connect an
endpoint if the directed datagram has been posted but not received.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-09-02 09:17:44 -06:00
Ralph Castain
34f04a7924 Remove spurious Makefile.am line 2016-09-01 15:31:09 -07:00
Ralph Castain
0ea1cff733 Implement notification of completion on comm_spawn'd child jobs. Add a configure flag to enable PMIx 3's shared memory datastore, and set it disable by default so that comm_spawn functions again. Will reverse the default once that feature is fully functional 2016-09-01 13:10:10 -07:00
rhc54
39d086e000 Merge pull request #2035 from rhc54/topic/memprofile
Provide a mechanism for obtaining memory profiles of daemons and application profiles for use in studying our memory footprint
2016-08-31 14:06:48 -05:00
Ralph Castain
39992d1ad7 Silence trivial Coverity warnings 2016-08-31 09:42:33 -07:00
Ralph Castain
c1050bc01e Provide a mechanism for obtaining memory profiles of daemons and application profiles for use in studying our memory footprint. Setting OMPI_MEMPROFILE=N causes mpirun to set a timer for N seconds. When the timer fires, mpirun will query each daemon in the job to report its own memory usage plus the average memory usage of its child processes. The Proportional Set Size (PSS) is used for this purpose. 2016-08-31 09:32:07 -07:00
Ralph Castain
cfa784c9a6 Since we changed storage to pointers in pmix_value_t, we need to allocate space for those values when unpacking 2016-08-29 20:22:24 -07:00