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Граф коммитов

26922 Коммитов

Автор SHA1 Сообщение Дата
Jeff Squyres
fa10e1ea97 Create a Github issue template
So that we can stop asking common questions like "What version of Open
MPI are you using?", etc.

[skip ci]
bot:notest

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-04-12 16:18:32 -04:00
Ralph Castain
97e38e6d84 Move a free to a little later in case the verbose output needs it
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-11 11:21:12 -07:00
Ralph Castain
bb81f3b5db Always setup the attach fifo, even when we initially launch under a debugger so that the user can detach and reattach later
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-11 08:24:03 -07:00
Nathan Hjelm
bea7d9e4f7 Merge pull request #3320 from hjelmn/osc_pt2pt_fix
osc/pt2pt: fix infinite frag allocation loop
2017-04-11 09:09:30 -06:00
Artem Polyakov
4477b87e1d Merge pull request #3303 from karasevb/timing2/master
OMPI timings
2017-04-11 07:52:40 -07:00
Boris Karasev
d132eab4a5 ompi/timings: fixed the error of opal timings env import
Signed-off-by: Boris Karasev <karasev.b@gmail.com>
2017-04-11 12:08:48 +06:00
Nathan Hjelm
12b52b2b2c osc/pt2pt: fix infinite frag allocation loop
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-04-10 16:30:47 -06:00
Nathan Hjelm
4146ef9725 Merge pull request #3272 from hjelmn/cma_fix
cma: restore --with-cma=no configure option
2017-04-10 12:17:01 -06:00
KAWASHIMA Takahiro
94092fbbab Merge pull request #3306 from kawashima-fj/pr/darray-accumulate-fix
datatype: Fix darray MPI_ACCUMULATE bug
2017-04-10 18:42:35 +09:00
KAWASHIMA Takahiro
b4599d7bb7 datatype: Fix darray MPI_ACCUMULATE bug
Array sizes of `array_of_gsizes`, `array_of_distribs`, `array_of_dargs`,
and `array_of_psizes` parameters of the `ompi_datatype_create_darray`
function (and `MPI_TYPE_CREATE_DARRAY`) are all `ndims`.
`ndims` are `i[2]`, not `i[0]`. See MPI-3.1 p.122.

Because this function `__ompi_datatype_create_from_args` is used by
pt2pt OSC, using a datatype created by `MPI_TYPE_CREATE_DARRAY` for
`MPI_(R)(GET_)ACCUMULATE` caused a segmentation fault or something
on a target process.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2017-04-10 17:31:59 +09:00
Ralph Castain
95ae0d1df3 Cleanup timing macros for portability across compilers. Rename the --enable-timing configure option to be --enable-pmix-timing so it doesn't pickup external timing requests. Remove a stale function reference in PMIx so it can compile with timing enabled.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-10 12:56:38 +06:00
Howard Pritchard
f5942ff23c Merge pull request #3304 from hppritcha/topic/de-ortization-of-ompi
de-ORTEfy the ompi tree
2017-04-07 14:14:41 -06:00
Howard Pritchard
2b807d06d6 Merge pull request #3300 from bwbarrett/master
build: Fix platform detection on FreeBSD
2017-04-07 13:01:49 -06:00
Noah Evans
ef29fb13cb de-ORTEfy the ompi tree
The ompi tree should be runtime independent, but over time a few
ORTE depedent definitions and functions have escaped into the ompi
tree. I'm working on my own runtime so I've used this as an opportunity
to get rid of ORTE dependencies in the ompi/ tree. I still need to go
back and change orte to conform to the new world and these changes are
untested, but I can now compile (but not link) without orte so I'm
commiting this changeset.

Signed-off-by: Noah Evans <noah.evans@gmail.com>
2017-04-07 12:35:58 -06:00
Nathaniel Graham
5e44e40ca9 Merge pull request #3293 from nrgraham23/mpirun_help_parsable
Add parsable option to help arguments
2017-04-07 11:35:49 -06:00
Boris Karasev
36a0e71f2d ompi/timings: preparing to production state
Adds:
- enabling/disabling of timings throught environment variable `OMPI_TIMING_ENABLE`
- output format: [file name]:[function name]:[description]: avg/min/max
- dynamically extending array of results for case then inited size was exhausted
- catch and collect errors
- cleanup

Note:
For use feature need to configure with `--enable-timings`
and set env `OMPI_TIMING_ENABLE = 1`

Signed-off-by: Boris Karasev <karasev.b@gmail.com>
2017-04-07 21:16:57 +06:00
Artem Polyakov
e3acf2a339 ompi/timings: add OMPI-level timing framework.
This is an extension of OPAL timing framework that allows to use
MPI_reduce to provide the compact representation of the collected
timings throughout the whole application.

NOTE: the functionality is disabled now, it will be enabled after
the runtime verification.

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2017-04-07 21:16:22 +06:00
Artem Polyakov
45898a9c65 opal/timing: add the draft of env-based timings
This commit adds new timing feature that uses environment variables to
expose timing information. This allows easy access to this data (if
timing is enabled) from any other part of the application for the subsequent
postprocessing.
In particular this will be integrated with OMPI-level timing framework that
whill use MPI_Reduce functionality to provide more compact and easy-to use
information.

This commit also adds the example of usage of this framework by annotating
rte_init function. The result is not used anywhere for now. It will be
postprocessed in subsequent commits.

NOTE: that functionality is currently disabled untill it will be verified at runtime

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2017-04-07 21:16:22 +06:00
Artem Polyakov
88ed79ea25 opal/timing: remove old framework
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2017-04-07 21:16:22 +06:00
Artem Polyakov
1063c0d567 opal/timing: remove timings from MPI_Init and MPI_Finalize
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2017-04-07 21:16:21 +06:00
Artem Polyakov
482d7c9322 opal/timing: remove RML timings
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2017-04-07 21:16:21 +06:00
Artem Polyakov
79100de014 opal/timing: Remove oob tracing
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2017-04-07 21:16:21 +06:00
Ralph Castain
eba6c6b827 Merge pull request #3301 from rhc54/topic/faults
Correctly identify the source of the event when notifying of abnormal termination by a proces
2017-04-06 21:43:34 -07:00
Ralph Castain
b526bca56c Fix a potential segfault by avoiding NULL topologies prior to launching the VM.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-06 20:51:19 -07:00
Ralph Castain
b33b4607df Correctly identify the source of the event when notifying of abnormal termination by a process
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-06 20:50:38 -07:00
Brian Barrett
ab3ac6d0ea build: Fix platform detection on FreeBSD
Look for amd64 in addition to x86_64 as the platform
type for x86_64 assembly.  The FreeBSD-packaged
Autoconf package has a patch to return
amd64-unknown-freebsd11.0 instead of the
x86_64-unknown-freebsd11.0 that a stock Autoconf
package would return.  Since we want to run Jenkins
builds on FreeBSD, working around the FreeBSD patch
is probably the easiest thing.

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
2017-04-06 20:27:22 -07:00
Ralph Castain
666386fc19 Merge pull request #3294 from rhc54/topic/modx
Enable SLURM on Cray with constraints and fix bug in nidmap
2017-04-06 09:55:07 -07:00
Ralph Castain
a29ca2bb0d Enable slurm operations on Cray with constraints
Cleanup some errors in the nidmap code that caused us to send unnecessary topologies

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-06 08:58:06 -07:00
Brian Barrett
d7f283cbce README: Update supported platform list
Per discussion at last developer's forum, platforms
not actively being tested (either in Jenkins or
at least weekly in MTT) are not eligible to be listed
as supported platforms.  Move a number of systems out
of the supported list.

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
2017-04-05 17:25:01 -07:00
Nathaniel Graham
36d660e07a Add parsable option to help arguments
This commit adds a "parsable" option to the help
arguments, which prints out a machine readable
list of all the mpirun options.

Fixes #3279

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2017-04-05 17:01:43 -06:00
Ralph Castain
bf668ad1e9 Merge pull request #3287 from rhc54/topic/ht
Provide further (hopefully) helpful messages about the hotel size
2017-04-05 07:26:03 -07:00
Ralph Castain
db8943cedd Provide further (hopefully) helpful messages about the hotel size
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-05 04:27:32 -07:00
Ralph Castain
840d6c9a1d Merge pull request #3284 from rhc54/topic/hotel
Resolve the direct modex race condition.
2017-04-05 03:09:27 -07:00
Gilles Gouaillardet
8d1369db49 Merge pull request #3283 from ggouaillardet/topic/nvml
build nvml support only with CUDA support
2017-04-05 16:14:23 +09:00
Ralph Castain
b7e9711f45 Resolve the direct modex race condition. The request hotel was running out of rooms, thereby returning an error upon checkin - and we had missed error_logging a couple of those places. Hence no error message and things just hung.
Output a (hopefully) helpful message when we timeout an operation

Thanks to Nathan for tracking it down.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-04 21:32:44 -07:00
Ralph Castain
9a69b20d09 Merge pull request #3282 from rhc54/topic/direct
Set the PARENT vpid for direct routed module
2017-04-04 20:55:12 -07:00
Gilles Gouaillardet
10ea991d0a hwloc: add CUDA include dir to CPPFLAGS
so hwloc configury can find nvml.h when CUDA support is built

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-04-05 11:46:22 +09:00
Gilles Gouaillardet
8d7541f766 hwloc: disable nvml is CUDA support is not built in Open MPI
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-04-05 11:07:34 +09:00
Ralph Castain
9132bb26fe Merge pull request #3281 from rhc54/topic/dmx
Adjust the timeout for direct modex requests to reflect the size of t…
2017-04-04 19:04:33 -07:00
Ralph Castain
40ca43e157 Set the PARENT vpid for direct routed module
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-04 19:03:28 -07:00
Ralph Castain
734b90aa6b Adjust the timeout for direct modex requests to reflect the size of the job. It can take several seconds to start all the procs, and we don't want to timeout due to differences in start times of the various procs
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-04 18:20:51 -07:00
Ralph Castain
9cb18b8348 Merge pull request #3280 from rhc54/topic/dvm
Fix the DVM by ensuring that all nodes, even those that didn't partic…
2017-04-04 18:15:33 -07:00
Ralph Castain
74863a0ea4 Fix the DVM by ensuring that all nodes, even those that didn't participate (i.e., didn't have any local children) in a job, clean up all resources associated with that job upon its completion. With the advent of backend distributed mapping, nodes that weren't part of the job would still allocate resources on other nodes - and then start from that point when mapping the next job. This change ensures that all daemons start from the same point each time.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-04 17:31:38 -07:00
Aurelien Bouteiller
308d33dca7 Merge pull request #3266 from abouteiller/bugfix/f90mpiext
Fix the top_ompi_srcdir in Fortran mpiext building system
2017-04-04 16:25:30 -04:00
Nathaniel Graham
7063f3021f Merge pull request #3231 from nrgraham23/revamp_mpirun_help
mpirun --help output revamp
2017-04-04 12:32:20 -06:00
Nathaniel Graham
19e5d15491 mpirun --help output revamp
This commit modifies the output from the mpirun --help
command.  The options have been split into groups, to
make the output smaller and more readable.  The groups
are: general, debug, output, input, mapping, ranking,
binding, devel, compatibility, launch, dvm, and
unsupported. There is also a special "full" command
that can be used to get the old behaviour of printing
out all of the options.  Unsupported options may only
be seen with this full output.

This commit also adds a special case for the help
argument.  It makes it possible for the user to
enter 0 or 1 arguments instead of having to always
enter an argument.  This defaults to printing out
the "general" help options so the user can then
see what help arguments there are.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2017-04-04 10:59:32 -06:00
Ralph Castain
a605bd4265 Merge pull request #3278 from rhc54/topic/tm
Remove stale code line
2017-04-04 09:04:52 -07:00
Ralph Castain
393c4536eb Remove stale code line
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-04 08:13:15 -07:00
Nathan Hjelm
1322e5dee8 Merge pull request #3274 from hjelmn/osc_rdma_fix
osc/rdma: fix typo in atomic code
2017-04-04 00:20:42 -06:00
Gilles Gouaillardet
5dfd4ab6ca coll/tuned: remove set-but-not-used variables
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-04-04 13:18:11 +09:00