ports/openmpi
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Gilles Gouaillardet
f2e33c725f MPI_Unpack: fix return status 
this regression was previously introduced in open-mpi/ompi@221e6e2eab
 2016-03-31 09:56:54 +09:00
bosilca
21f59b81a7 Merge pull request #1509 from ggouaillardet/topic/external_support2 
Add support for packing to/from external32 format.
 2016-03-30 15:51:14 -04:00
Ralph Castain
7eca2f9650 Add missing include 2016-03-30 01:34:01 -07:00
Gilles Gouaillardet
e852d85cc1 btl/tcp: add missing mca_btl_tcp_dump() subroutine 2016-03-30 16:10:15 +09:00
Gilles Gouaillardet
5932287cef datatype/[un]pack_external[_size]: move subroutines down to ompi/datatype 
so it can be directly used by test/datatype/external32
 2016-03-30 13:01:33 +09:00
Gilles Gouaillardet
63eec552b2 datatype/external32: fix test 2016-03-30 11:40:18 +09:00
Gilles Gouaillardet
0f9ddbe02e test/datatype/external32: make it a non MPI application 2016-03-30 11:40:18 +09:00
Gilles Gouaillardet
cd829e4646 opal/datatype: only use opal_pack_general[_checksum] if CONVERTOR_SEND_CONVERSION && ! CONVERTOR_HOMOGENEOUS 2016-03-30 11:40:18 +09:00
George Bosilca
383b78d8a6 Validate the packed data 
Use htonl and htons to check that the packed data is
indeed the correct data.
 2016-03-30 11:40:18 +09:00
George Bosilca
8da67f5ef8 Add a test to validate the support for external32. 2016-03-30 11:40:18 +09:00
George Bosilca
cf2bb20bac Always build support for HETEROGENEOUS environment (this is needed to 
provide external32 support). Add a pack function allowing to
provide send conversion (needed on little endian machine in
order to pack in the external32 format).
 2016-03-30 11:40:18 +09:00
George Bosilca
639f4b1086 Add a small optimization for the vector of predefined datatype. 2016-03-30 11:40:18 +09:00
Gilles Gouaillardet
221e6e2eab Add the datatype checks to the pack/unpack functions. 
The datatype must satisfy the same constraints as for the
corresponding communication function (send for pack and
recv for unpack).
 2016-03-30 11:40:08 +09:00
George Bosilca
1ff2a38b46 Dump also the blockLen. 2016-03-30 11:39:10 +09:00
Gilles Gouaillardet
a89f113507 mpi/c: add missing OPAL_CR_EXIT_LIBRARY() in [un]pack[_external] 2016-03-30 11:25:21 +09:00
Nathan Hjelm
985a3b35f3 Merge pull request #1508 from hjelmn/builtin_atomics 
configure: only enable sync builtin atomics if they link
 2016-03-29 20:09:08 -06:00
Nathan Hjelm
e1cace0b02 configure: only enable sync builtin atomics if they link 
This commit fixes the check for sync builtin atomics.
AC_COMPILE_IFELSE is insufficient to check for the builtins. Need to
use AC_LINK_IFELSE.

Fixes open-mpi/ompi#1487

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-03-29 16:57:15 -06:00
Ralph Castain
f70c5c495b Tsk...tsk...replace references to ompi values with opal 2016-03-29 13:35:43 -07:00
George Bosilca
d0165818b3 Initialize all common symbols. 2016-03-29 16:08:27 -04:00
George Bosilca
004c0cc05b Fix issues identified by @derbeyn. 2016-03-29 15:50:32 -04:00
Ralph Castain
bd18d9c9d5 Ensure the compiler knows that a critical variable is volatile 2016-03-29 09:18:25 -07:00
Jeff Squyres
91c54d7a07 Merge pull request #1491 from ICLDisco/progress_thread 
BTL TCP async progress
 2016-03-29 06:26:10 -04:00
Nathan Hjelm
8b554779d7 Merge pull request #1504 from hjelmn/ob1_unreach 
pml/ob1: detect unreachable errors
 2016-03-28 15:38:09 -06:00
George Bosilca
f69eba1bc4 Update the copyright and cleanup the code. 
Per @jsquyres suggestion remove all trailing spaces.
Credit to `sed -i.bak 's/ *$//' */[ch]`.
 2016-03-28 14:41:01 -04:00
Thananon Patinyasakdikul
92062492b9 Enable Threading in the BTL TCP 
Added mca parameter to turn progress thread on/off
Add a flag to check if we have btl progress thread.
Added macro for ob1 matching lock.
Update the AUTHORS file.
 2016-03-28 14:41:01 -04:00
George Bosilca
32277db6ab Add support for async progress in the BTL TCP. 
All BTL-only operations (basically all data movements
with the exception of the matching operation) can now
be handled for the TCP BTL by a progress thread.
 2016-03-28 14:40:50 -04:00
Jeff Squyres
dfec5312cb Merge pull request #1502 from jsquyres/pr/fix-libfabric-user-intent 
fix libfabric user intent
 2016-03-28 14:15:39 -04:00
Jeff Squyres
ddc99d2ee5 Merge pull request #1503 from jsquyres/pr/remove-verbs-usage-in-usnic-btl 
2 usnic fixes
 2016-03-28 14:13:00 -04:00
Nathan Hjelm
9d5eeecb8a pml/ob1: detect unreachable errors 
This commit adds code to detect when procs are unreachable when using
the dynamic add_procs functionality.

Fixes #1501

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-03-28 10:52:40 -06:00
Jeff Squyres
bd3c15cef0 opal_summary: no tabs! 
* Replace all tabs with spaces
* Remove extraneous extra blank line at the end (in some cases, we
  were getting *2* blank lines at the end)
* Use `echo " "` instead of `echo` (which may not be portable)

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-03-28 09:20:31 -07:00
Jeff Squyres
4a3c986a80 usnic: remove need for hwloc verbs helper 
Haven't needed this for a while, but it got left in by accident.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-03-28 09:10:12 -07:00
Jeff Squyres
05e2423756 usnic: specify the cache name 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-03-28 09:02:52 -07:00
Jeff Squyres
ccdc10dda3 opal_check_libfabric: correctly check for user intent 
If the user asked for libfabric and we can't build for it, abort.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-03-28 08:32:03 -07:00
Gilles Gouaillardet
1baed498b6 win: silence a warning in alloc_window(...) 2016-03-28 14:57:31 +09:00
Gilles Gouaillardet
4a76f23f40 btl/openib: do not issue an error message if modex cannot retrieve openib info 2016-03-28 10:42:16 +09:00
Nysal Jan K.A
75233573d1 pmix: Increment the reference count in PMIx_Init 
The reference counting was broken which led PMIx_Finalize
to release resources early. This fixes the "use after free" scenarios
that I encountered.

(based on commit pmix/master@abfaa4c)
 2016-03-27 04:11:25 -04:00
Howard Pritchard
e7433fcb44 Merge pull request #1486 from hppritcha/topic/fix_wlm_detect_code 
plm/alps: fix usage of cray wlm_detect methods
 2016-03-26 13:22:50 -06:00
Nathan Hjelm
d6e90f24b1 Merge pull request #1483 from hjelmn/flag_enum_2 
RFC: Add support for flag enumerators for MCA variables
 2016-03-26 11:43:33 -06:00
Jeff Squyres
2410275a73 monitoring test: fix printf warning 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-03-26 03:50:57 -07:00
Jeff Squyres
2c5b39718d oshmem: fix scoll_null_alltoall() prototype 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-03-26 03:50:57 -07:00
Jeff Squyres
017f242b1b opal: remove some unused variables / compiler warnings 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-03-26 03:50:57 -07:00
Josh Hursey
099170bb31 Merge pull request #1496 from jjhursey/topic/pmix120-obj-patch 
pmix/pmix120: Fix OBJ_ to PMIX_ symbol name
 2016-03-25 19:35:43 -05:00
Ralph Castain
0b4310b186 Remove an unnecessary header that forced exposure of the PMIx internal headers 2016-03-25 16:57:41 -07:00
Ralph Castain
e8246e079b Minor cleanup to match the changes in the PMIx master 2016-03-25 15:12:41 -07:00
Joshua Hursey
8ebeaa5861 pmix/pmix120: Fix OBJ_ to PMIX_ symbol name 2016-03-25 16:17:08 -05:00
Ralph Castain
0e1350f5b7 Add missing header files 2016-03-25 09:06:51 -07:00
Ralph Castain
a3fea58d1c Minor cleanups to prior PR commit 2016-03-24 15:55:14 -07:00
rhc54
6756e19aa2 Merge pull request #1457 from anandhis/master 
rml changes
 2016-03-24 15:17:29 -07:00
rhc54
ba8c8700aa Merge pull request #1493 from rhc54/topic/sing 
Update singularity support to track changes in upstream Singularity code
 2016-03-24 15:16:38 -07:00
Ralph Castain
8c14df2328 Revert "Modify singularity support per patch from Greg Kurtzer" 
This reverts commit open-mpi/ompi@f7257a8310.

Ensure that we properly cleanup the session directory tree. Prior code had issues with symlinks, especially if the file that the link points to was already removed as we traverse the tree. Also found that the dirent checks for directory type weren't fully portable, and so fall back to the stat-based approach which is known to be portable.

Fix singularity singletons by detecting we are in a container and properly setting the pmix selection to pick the isolated component. Remove a stale restriction blocking use of the sm btl
 2016-03-24 11:27:18 -07:00