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30150 Коммитов

Автор SHA1 Сообщение Дата
Mikhail Brinskii
f2cbd4806e COLL/TUNED: Add linear scatter using isend for mlnx platform
Signed-off-by: Mikhail Brinskii <mikhailb@mellanox.com>
2019-11-07 11:04:39 +02:00
Jeff Squyres
8343a289f2
Merge pull request #7112 from wbailey2/pr/fix-HACKING
Changed the final URL to https://github.com/westes/flex
2019-10-28 09:25:21 -04:00
Jeff Squyres
e59e6f714c
Merge pull request #7105 from ggouaillardet/topic/f08_bind_c_constants_revamp
fortran/use-mpi-f08: revamp mpi_f08 constants
2019-10-28 09:14:23 -04:00
William Bailey
caf1d9292c Changed the final URL to https://github.com/westes/flex
Signed-off-by: William Bailey <wbailey2@nd.edu>
2019-10-27 22:33:50 -04:00
Gilles Gouaillardet
51e23f8cb6 fortran/use-mpi-f08: remove bind(C) constants.
Remove unused bind(C) constants in ompi/mpi/fortran/use-mpi-f08/constants.{c,h}
(and break ABI compatibility).

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2019-10-28 10:28:17 +09:00
Gilles Gouaillardet
df6d763a53 configury: remove references to unused OMPI_PROTECTED
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2019-10-28 10:28:17 +09:00
Gilles Gouaillardet
b10a60a5a9 fortran/use-mpi-f08: revamp constant declarations
In order to work around an issue with flang based compilers,
avoid declaring bind(C) constants and use plain Fortran parameter
instead.

For example,
type(MPI_Comm), bind(C, name="ompi_f08_mpi_comm_world") OMPI_PROTECTED :: MPI_COMM_WORLD
is changed to
type(MPI_Comm), parameter :: MPI_COMM_WORLD = MPI_Comm(OMPI_MPI_COMM_WORLD)

Note that in order to preserve ABI compatibility, ompi/mpi/fortran/use-mpi-f08/constants.{c,h}
have been kept even if its symbols are no more referenced by Open MPI.

Refs. open-mpi/ompi#7091

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2019-10-28 10:01:17 +09:00
Austen Lauria
aa8be9c12d
Merge pull request #6284 from devreal/ompi-rdma-memalign
Ensure proper alignment of memory provided by MPI
2019-10-25 12:27:58 -04:00
Austen Lauria
ecd990a67c
Merge pull request #6933 from devreal/osc-ucx-excl-lock
UCX osc: properly release exclusive lock to avoid lockup
2019-10-25 09:16:51 -04:00
Austen Lauria
96f55b0b32
Merge pull request #7096 from jsquyres/pr/fix-alps-configure-output
opal_check_alps: fix configure output
2019-10-25 09:02:25 -04:00
Jeff Squyres
d8f17aea69
Merge pull request #7097 from mcoil1/pr/README-fix2
README: Use "--" notation for CLI options
2019-10-18 16:32:29 -04:00
Maxwell Coil
7e07346524 README: Use "--" notation for CLI options
Signed-off-by: Maxwell Coil <mcoil@nd.edu>
2019-10-18 15:44:23 -04:00
Jeff Squyres
26705efad0 opal_check_alps: fix configure output
There was a path where OPAL_CHECK_ALPS would exit its testing but
still leave `opal_check_cray_alps_happy` blank.  Fix that by setting
it to "no".

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2019-10-18 11:30:00 -07:00
Edgar Gabriel
dce203ffc6
Merge pull request #7057 from edgargabriel/topic/romio321-status-set-elements-fix
MPIR_Status_set_bytes: fix for large counts
2019-10-18 08:16:36 -05:00
Nathan Hjelm
b1ef5a40fa
Merge pull request #7016 from hjelmn/fix_btl_uct_from_yet_another_unannounced_api_break_in_the_openucx_uct_layer
btl/uct: add support for OpenUCX v1.8 API changes
2019-10-17 06:27:18 -07:00
Jeff Squyres
b6c4d5c118
Merge pull request #7060 from jsquyres/pr/usnic-mca-updates
BTL usnic MCA updates
2019-10-15 10:48:10 -04:00
Jeff Squyres
e1e6d8b85e
Merge pull request #7076 from ftab/pr/my-superlative-fix
README: Remove info for plugins that aren't used anymore
2019-10-10 14:52:36 -04:00
Jeff Squyres
65fd12feff
Merge pull request #7081 from msbrowning/pr/fixed-README
Removed text block from line 883 of README.
2019-10-10 14:52:23 -04:00
Mark Browning
77b3ff9d38 Remove the stale cr MPI extension
Also removed text block from line 883 of README.

Signed-off-by: Mark Browning <marksbrowning3@gmail.com>
2019-10-10 13:24:30 -04:00
Jeff Squyres
f7ee4463b3
Merge pull request #7079 from CalebProvost/hacktoberfest
Edit README
2019-10-10 13:18:54 -04:00
Jeff Squyres
896ce76b64
Merge pull request #7082 from kizill/master
Fix ipv6 improper address copy bug
2019-10-10 12:01:44 -04:00
Jeff Squyres
8f3583d3bd
Merge pull request #7073 from Joe-Downs/pr/fix-README
README: edit "dist_graph topologies" to "communicator topologies"
2019-10-10 11:55:43 -04:00
Jeff Squyres
d736253079
Merge pull request #7074 from classicsman/pr/fix-README
Deleted paragraph
2019-10-10 11:50:38 -04:00
Jeff Squyres
836a0766ae
Merge pull request #7072 from bfitzgit23/pr/fix-README
README-fixed-bfitzgit23
2019-10-10 11:39:06 -04:00
CalebProvost
634054fb37 README: minor grammar fixes
Signed-off-by: CalebProvost <DHX664@gmail.com>
2019-10-10 11:23:55 -04:00
Rick Gleitz
0c923c5428 README: deleted stale paragraph about fca component
Signed-off-by: Rick Gleitz <rgleitz@jefflibrary.org>
2019-10-10 11:07:53 -04:00
Jeff Squyres
f77c3327d8
Merge pull request #7070 from Cfoster01/pr/fix-README
updated readme to remove double space on line 297
2019-10-10 11:06:52 -04:00
Jeff Squyres
69eca3c599
Merge pull request #7069 from summonholmes/master
Fix a typo: slopen -> dlopen
2019-10-10 11:06:12 -04:00
Jeff Squyres
f10e582f71
Merge pull request #7078 from santa65/pr/readme-fix
fix address
2019-10-10 10:32:27 -04:00
bfitzgit23
38da109217 README: Removed stale sentance about --enable-mpi-thread-multiple
Signed-off-by: bfitzgit23 <dfitz@me.com>
2019-10-10 10:22:09 -04:00
shanekimble
72b6292b69 Fix a typo: slopen -> dlopen
Signed-off-by: shanekimble <skimble@edjanalytics.com>
2019-10-10 10:04:09 -04:00
santa magar
3bbf870fde README: fix Knem URL
Signed-off-by: santa magar <santa65thapa@yahoo.com>
2019-10-10 09:34:33 -04:00
Stanislav Kirillov
0e0763e006
fix ipv6 btl connection bug
Signed-off-by: Stanislav Kirillov <staskirillof@yandex.ru>
2019-10-10 11:20:37 +00:00
Dennis Field
e72b93bf60 README: Remove info for plugins that aren't used anymore
Signed-off-by: Dennis Field <fury@xibase.com>
2019-10-09 20:38:50 -04:00
Joe Downs
dd6a4f3950 README: edit to "communicator topologies"
Signed-off-by: Joe Downs <joedowns502@gmail.com>
2019-10-09 20:22:26 -04:00
Foster
252e98c474 updated readme to remove double space on line 297
Signed-off-by: Foster <CCF6703@yum.com>
2019-10-09 20:17:46 -04:00
Geoff Paulsen
4e1e6f8972
Merge pull request #6993 from awlauria/fix_warnings_master
Fix miscellaneous compiler warnings.
2019-10-09 09:17:02 -05:00
Gilles Gouaillardet
096da7b3b5
Merge pull request #7061 from ggouaillardet/topic/ucx_zero_size_ddt
pml/ucx: correctly handle zero size datatypes
2019-10-09 17:28:18 +09:00
Gilles Gouaillardet
33361aa124 pml/ucx: correctly handle zero size datatypes
zero-size derived datatypes are now flagged as OPAL_DATATYPE_FLAG_CONTIGUOUS
so update mca_pml_ucx_init_datatype() to correctly handle them.
Since 'size' is a 'size_t', the assertion can simply be removed.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2019-10-09 16:54:00 +09:00
Gilles Gouaillardet
8906f8cdc6
Merge pull request #7062 from ggouaillardet/topic/travis_distcheck
travis: fix make distcheck
2019-10-09 13:30:14 +09:00
Gilles Gouaillardet
d37f35244f travis: fix make distcheck
bad side effect occurs when CPPFLAGS is set in the environment,
so set it (and LDFLAGS too) on the configure command line.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2019-10-09 12:57:54 +09:00
Jeff Squyres
3080033a8c btl/usnic: set retrans_timeout back down to 5ms
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2019-10-08 11:17:54 -07:00
Jeff Squyres
132e4cab3b btl/usnic: set ack_iteration_delay default to 4
It was previously accidentally set to 0.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2019-10-08 11:17:30 -07:00
Edgar Gabriel
8a3abbf803 MPIR_Status_set_bytes: fix for large count sizes
Change the ncounts argument to MPI_Count and use
MPI_Status_set_elements_x for enabling read/write operations beyond
the 2GB limit.

Thanks to  Richard Warren from the HDF5 group for reporting the issue
and providing the suggested fix for romio.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2019-10-08 10:47:02 -05:00
Edgar Gabriel
ea7e1ea859
Merge pull request #7046 from edgargabriel/pr/hdf5-2gb-bug
comomn_ompio_file_read/write: fix 2GB limiting issue
2019-10-05 10:39:09 -05:00
Edgar Gabriel
a130f569df comomn_ompio_file_read/write: fix 2GB limiting issue
individual read/write operations exceeding 2GB fail in ompio
due to improper conversions from size_t to int in two different
locations. This commit fixes an issue reported by Richard Warren
from the HDF5 group.

Fixes Issue #397

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2019-10-05 09:50:02 -05:00
Jeff Squyres
a49ae7f034
Merge pull request #7038 from jsquyres/pr/usnic-fixes-and-optimizations
btl/usnic fixes and optimizations
2019-10-04 19:38:50 -04:00
Jeff Squyres
fe7f772f21 btl/usnic: properly size freelist items
Move the prefix area from the head to the body in relevant size
computations.  This fixes a problem in high traffic situations where
usNIC may have sent from unregistered memory.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2019-10-04 14:40:56 -07:00
Jeff Squyres
27e3040dfe btl/usnic: cap the number of resends per progress iteration
New MCA param: btl_usnic_max_resends_per_iteration.  This is the max
number of resends we'll do in a single pass through usNIC component
progress.  This prevents progress from getting stuck in an endless
loop of retransmissions (i.e., if more retransmissions are triggered
during the sending of retransmissions).  Specifically: we need to
leave the resend loop to allow receives to happen (which may ACK
messages we have sent previously, and therefore cause pending resends
to be moot).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2019-10-04 13:05:51 -07:00
Jeff Squyres
3cc95d86b2 btl/usnic: increase default retrans_timeout
Significantly increase the default retrans timeout.  If the
retrans timeout is too soon, we can end up in a retransmission storm
where the logic will continually re-transmit the same frames during a
single run through the usNIC progress function (because the timer for
a single frame expires before we have run through re-transmitting all
the frames pending re-transmission).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2019-10-04 13:05:51 -07:00