ports/openmpi
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rhc54
ee1ee2086c Merge pull request #1958 from rhc54/topic/path 
Fix a bug where we were requiring that all paths in $PATH be absolute
 2016-08-12 12:31:43 -07:00
Ralph Castain
0e58609327 Fix a bug where we were requiring that all paths in $PATH be absolute. Some users provide relative paths in their environment, and we should respect those. 2016-08-12 11:28:57 -07:00
rhc54
163999bce0 Merge pull request #1957 from rhc54/topic/rsh 
If the ssh agent hasn't been given, then check for qrsh and friends
 2016-08-12 11:18:28 -07:00
Ralph Castain
1c44543854 If the ssh agent hasn't been given, then check for qrsh and friends 2016-08-12 07:46:39 -07:00
rhc54
397faad46b Merge pull request #1954 from rhc54/topic/covpmix 
Silence Coverity warnings
 2016-08-12 06:38:04 -07:00
Ralph Castain
1d44f0c0e2 Silence Coverity warnings 2016-08-11 21:22:01 -07:00
rhc54
82240f579a Merge pull request #1952 from rhc54/topic/pmixcov 
Update to latest PMIx toolext branch
 2016-08-11 14:24:13 -07:00
Ralph Castain
73544d2e00 Rename symbol 2016-08-11 13:06:46 -07:00
Ralph Castain
b0cc9b0bc8 Update to latest PMIx toolext branch 
Fix indentations

Update the ext20 component to match latest PMIx master.

Cleanup name conflicts and uninit vars
 2016-08-11 12:29:48 -07:00
George Bosilca
8d0baf140f If the RTE fails to deliver the daemon information, 
gracefully fallback to a non-reordered communicator.
Optimize the loops building the process hierarchy.
 2016-08-11 13:04:27 -04:00
Ralph Castain
23886754f0 Trim the coverity build line to packages available on this machine 2016-08-10 13:55:55 -07:00
Ralph Castain
55551a4fb7 Complete debug of the nightly coverity submittal 2016-08-10 12:05:21 -07:00
Ralph Castain
375f04b277 Update the nightly builds to submit to coverity 2016-08-10 08:45:18 -07:00
Gilles Gouaillardet
dfbf2b7be4 opal/threads: add OPAL_THREAD_SUB_SIZE_T macro 
-1 is not a valid size_t, so instead of OPAL_THREAD_ADD_SIZE_T(..., -1),
simply OPAL_THREAD_SUB_SIZE_T(..., 1) and keep picky compilers happy
 2016-08-10 13:37:36 +09:00
Nathan Hjelm
799104f688 Merge pull request #1947 from hjelmn/perf 
pml/ob1: be more selective when using rdma capable btls
 2016-08-09 22:15:09 -06:00
Nathan Hjelm
4079eec974 pml/ob1: be more selective when using rdma capable btls 
This commit updates the btl selection logic for the RDMA and RDMA
pipeline protocols to use a btl iff: 1) the btl is also used for eager
messages (high exclusivity), or 2) no other RDMA btl is available on
an endpoint and the pml_ob1_use_all_rdma MCA variable is true. This
fixes a performance regression with shared memory when an RDMA capable
network is available.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-08-09 20:54:42 -06:00
rhc54
60f789dca1 Merge pull request #1948 from rhc54/topic/pmixtool 
Update to include extended tool support, new datatypes
 2016-08-09 16:17:28 -07:00
Nathan Hjelm
19be439998 Merge pull request #1949 from hjelmn/ugni_fix 
btl/ugni: fix another connection race
 2016-08-09 08:32:40 -06:00
Nathan Hjelm
38f18eed22 Merge pull request #1941 from ggouaillardet/topic/memory_patcher_configury 
configury: make memory/patcher symbol detection more robust
 2016-08-09 07:06:38 -06:00
Gilles Gouaillardet
13009aa290 opal/alfg: have opal_random() wrapper always return a positive int 2016-08-09 17:12:30 +09:00
Gilles Gouaillardet
50966673a9 configury: fix sed expression in libtool's patch for NAG compiler 2016-08-09 11:02:46 +09:00
Gilles Gouaillardet
6f6b3ac68a configury: standardize memory/patcher symbol detection and make it more robust 
by default, Sun compilers optimize out the original test, and hence fail detecting a symbol is missing.
 2016-08-09 09:35:52 +09:00
Nathan Hjelm
adb668209b btl/ugni: fix another connection race 
This commit fixes a race that can occur when two threads are in the
ugni progress function at the same time. This race occurs when one
thread calls GNI_PostDataProbeById then goes to sleep then another
thread calls GNI_PostDataProbeById then GNI_EpPostDataWaitById before
the other thread wakes up. If this happens the first thread will print
a warning on GNI_EpPostDataWaitById about no matching post.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-08-08 15:38:11 -06:00
Ralph Castain
527b5c692a Update to include extended tool support, new datatypes 2016-08-08 13:39:46 -07:00
Ralph Castain
ba77d9beff Remove forced debugs 2016-08-08 13:20:24 -07:00
Nathan Hjelm
2788083b98 Merge pull request #1936 from hjelmn/osc_pt2pt_fix 
osc/pt2pt: do not set rdma_frag after start
 2016-08-08 14:17:40 -06:00
Nathan Hjelm
e4d7ea75a9 Merge pull request #1935 from hjelmn/persistent_fix 
pml/ob1: reset req_bytes_packed on start
 2016-08-08 14:17:13 -06:00
Todd Kordenbrock
b90da992c8 Merge pull request #1895 from PDeveze/Patchs-on-btl-portals4 
btl/portals4: Take into account the limitation of portals4 (max_msg_s…
 2016-08-08 15:12:50 -05:00
Todd Kordenbrock
3be6052523 Merge pull request #1896 from PDeveze/Patchs-on-coll-portals4 
Patchs on coll portals4
 2016-08-08 14:57:02 -05:00
Nathan Hjelm
5ced037488 Merge pull request #1939 from hjelmn/ugni_fix 
btl/ugni: protect against re-entry and races in connections
 2016-08-08 08:55:30 -06:00
Edgar Gabriel
fb9fa4fbc4 Merge pull request #1938 from edgargabriel/pr/barrier-on-close 
io/ompio: Add barrier to file_close and to file_set_size
 2016-08-08 09:22:08 -05:00
Edgar Gabriel
4709f4229b Merge pull request #1929 from edgargabriel/pr/ompio-code-reorg 
io/ompio: next step in code-reorganization
 2016-08-08 09:20:54 -05:00
Artem Polyakov
31cf46a827 Merge pull request #1945 from artpol84/pmi_fixes 
pmix-related fixes
 2016-08-08 21:19:18 +07:00
Artem Polyakov
b24ec3e3b9 pmix/s2: fix indentation (only) 2016-08-06 16:31:19 +06:00
Artem Polyakov
2cb923a413 pmix/s1: fix indentation (only) 2016-08-06 16:30:45 +06:00
Artem Polyakov
8aa3ef7799 pmix/s2: fix s2 component data placement 
Use wildcard for the information related to the job-level data.
Fixes s2 component with regard to PR https://github.com/open-mpi/ompi/pull/1897.
 2016-08-06 15:49:16 +06:00
Artem Polyakov
81063f1717 pmix/s1: fix s1 component data placement 
Use wildcard for the information related to the job-level data.
Fixes s1 component with regard to PR https://github.com/open-mpi/ompi/pull/1897.
 2016-08-06 15:45:46 +06:00
Artem Polyakov
1351a7065c ess/pmi: minor code readablility cleanup. 
Split process name variable "name" to
- "wildcard_rank" for the cases where wildcard is used.
- "pname" for the case where reference to particular process is needed.
 2016-08-06 15:45:19 +06:00
Jeff Squyres
44187b408c Merge pull request #1944 from thananon/fix_random_romio 2016-08-05 15:14:00 -07:00
Thananon Patinyasakdikul
23b27c510c romio: make romio use internal opal_random instead of rand(3). 
This fixes issue #1877
 2016-08-05 09:04:52 -07:00
Howard Pritchard
45170443ab Merge pull request #1940 from hppritcha/topic/make_clang_happy_panda 
code cleanup: clang is now a happier panda
 2016-08-04 23:32:37 -07:00
Howard Pritchard
ff669e7b15 code cleanup: clang is now a happier panda 
Clang 5.1 on my mac was a sad panda compiling a couple
of files,  complaining about uninitialized stack variables.

This commit makes clang a happier panda (or at least not so sad).

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2016-08-04 19:34:44 -06:00
Nathan Hjelm
14b36d4503 btl/ugni: protect against re-entry and races in connections 
This commit fixes two issues that can occur during a connection:

 - Re-entry to connection progress from modex lookup. Added an
   additional endpoint state that will keep the code from re-entering
   the common endpoint create.

 - Fixed a race between a process posting a directed datagram through
   a send and a connection being progressed through opal_progress().
   The progress code was not obtaining the endpoint lock before
   attempting to update the endpoint. To limit the amount of code
   changed for 2.0.1 this commit makes the endpoint lock recursive. In
   a future update this may be changed.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-08-04 16:08:01 -06:00
Edgar Gabriel
9c3180160c io/ompio: Add barrier to file_close and to file_set_size 
This fixes a bug reported on the mailing for ompio.
https://www.open-mpi.org/community/lists/users/2016/05/29333.php
 2016-08-04 11:20:31 -05:00
Jeff Squyres
c2634612d7 Merge pull request #1870 from jsquyres/pr/fix-unweighted-and-weights-empty 
mpi.h: fix types of MPI_UNWEIGHTED and MPI_WEIGHTS_EMPTY
 2016-08-04 08:49:58 -07:00
Jeff Squyres
c42d8867e6 Merge pull request #1925 from jsquyres/pr/warnings-fixes 
hwloc: fix Valgrind warning
 2016-08-04 08:48:50 -07:00
Jeff Squyres
36555b7a1d Merge pull request #1933 from thananon/fix_random 
Make libevent use internal random
 2016-08-04 08:27:56 -07:00
Jeff Squyres
085aef5b41 Merge pull request #1937 from karasevb/libevent_config_fix 
configury/libevent: fix incorrect drop of OPAL_HAVE_WORKING_EVENTOPS
 2016-08-04 08:14:15 -07:00
Boris Karasev
9d6a4b3b2d configury/libevent: fix incorrect drop of OPAL_HAVE_WORKING_EVENTOPS 
Fixes PR https://github.com/open-mpi/ompi/pull/1687
The code that sets OPAL_HAVE_WORKING_EVENTOPS for internal libevent
was executed even if the external libevent component was configured.

As the result libevent progress wasn't called in opal_progress which
for example caused ring_c to hang when pml/ob1 was used.
 2016-08-04 16:37:37 +06:00
Gilles Gouaillardet
30f98cd9d0 pmix: redefine OPAL_PMIX_ARCH macro 
Architecture is set by the ompi layer *after* job startup, so the key cannot
have the "pmix" prefix since optimizations in open-mpi/ompi@01a653d50a
otherwise architecture cannot be retrieved
 2016-08-04 13:31:28 +09:00