ports/openmpi
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Jeff Squyres
e9ae2567f0 Based on a bug report and suggested fix from Darshan maintainer Phil 
Carns, change to use access(.., F_OK) instead of stat() to check for
the presence of files.

Also remove redundant check for FAKEROOTKEY, and update all comments
to match.

This commit was SVN r27785.
 2013-01-10 14:43:07 +00:00
Jeff Squyres
8c8caa382e Good suggestion from Ralph: it's not complete ''now'' (it ''may'' be in 
the future).

This commit was SVN r27781.
 2013-01-09 17:06:04 +00:00
Brian Barrett
c01d709315 Fix fortran issues when there's no fortran compiler. 
This commit was SVN r27780.
 2013-01-09 17:05:49 +00:00
Brian Barrett
b817166072 Use a process name instead of a name list in bcol_basesmuma 
This commit was SVN r27779.
 2013-01-09 16:43:49 +00:00
Jeff Squyres
99ceb3adb2 Add notes/warnings about Java. 
This commit was SVN r27778.
 2013-01-09 13:09:03 +00:00
Jeff Squyres
8fc0294dff Minor line-break fixes. 
This commit was SVN r27777.
 2013-01-09 11:50:23 +00:00
Joshua Ladd
77df51c516 Fixes the definition of the first fragment and does not assume that first frag has offset_into_user_buff equal to zero. This fix should be added to cmr:v1.7.1:reviewer=pasha 
This commit was SVN r27775.
 2013-01-08 20:24:58 +00:00
Matthias Jurenz
9e47ef47ac Changes to VT: 
- fixed build error reported in http://www.open-mpi.org/community/lists/users/2013/01/21081.php:
		- removed typo
		- added configure test for declaration of the global 'environ' variable in unistd.h

This commit was SVN r27770.
 2013-01-08 14:30:13 +00:00
Alex Mikheev
fe672f255f request signal when sending over SRQ and number of SRQ sd_credits is 0 
This commit was SVN r27767.
 2013-01-08 14:00:29 +00:00
Ralph Castain
97ee683275 Track parentage of procs 
This commit was SVN r27758.
 2013-01-08 04:41:12 +00:00
Ralph Castain
aea6787918 Add new routed component with self-healing connections - based on radix component - for use in monitoring system 
This commit was SVN r27757.
 2013-01-08 04:40:35 +00:00
Ralph Castain
c9a596b487 Remove unused var 
This commit was SVN r27756.
 2013-01-08 04:39:30 +00:00
Jeff Squyres
84f1e14b17 As has been discussed for a long time, decided in the December 2012 
meeting, and RFCed in mid-December (#3424): we no longer build the MPI
C++ bindings by default.

The C++ bindings are still ''there'' -- starting with 1.9, we'll just
be providing a little encouragement to no longer use them.

There are no definite plans to ''remove'' the C++ bindings yet.  At
the earliest, we would remove them in the next feature series after
1.9. 

This commit was SVN r27755.
 2013-01-07 19:58:19 +00:00
Brian Barrett
703edbb0e6 Don't push infiniband CPPFLAGS into CPPFLAGS, but into the component CPPFLAGS 
This commit was SVN r27754.
 2013-01-07 18:57:03 +00:00
Brian Barrett
559b76a191 Need to include all the IB flags in the check for RDMA CM or the 
headers and libraries won't be found if OFED is installed in a
non-standard path...

This commit was SVN r27753.
 2013-01-07 17:54:10 +00:00
Ralph Castain
beddf3b379 Add required rml tag 
This commit was SVN r27751.
 2013-01-05 06:32:20 +00:00
Ralph Castain
756d2441a8 Actually output the values from opal_value_t 
This commit was SVN r27750.
 2013-01-05 06:31:47 +00:00
Ralph Castain
4834fb7e6d Minor change to the way we record test data 
This commit was SVN r27749.
 2013-01-05 06:31:20 +00:00
Ralph Castain
bee8bf5d8f Update the sensor framework to report stats back to the HNP if requested by including the data in heartbeats. 
This commit was SVN r27748.
 2013-01-05 06:30:20 +00:00
Ralph Castain
42c320214b Add platform files 
This commit was SVN r27747.
 2013-01-05 06:28:42 +00:00
Ralph Castain
c71e119bbb Extend the db framework to add support for logging data to databases without duplicating all the modex-related storage. 
This commit was SVN r27746.
 2013-01-05 06:28:09 +00:00
Samuel Gutierrez
c4acd20eb9 Backout r27739. 
This commit was SVN r27745.

The following SVN revision numbers were found above:
  r27739 --> open-mpi/ompi@a159bfaf25
 2013-01-05 01:54:23 +00:00
George Bosilca
791f31d688 Remove the unnecessary ompi_modex_recv_pointer function. 
This commit was SVN r27744.
 2013-01-04 20:50:25 +00:00
George Bosilca
34eecb8956 Be more explicit about the operation (store or update). complain loudly 
if something goes wrong.

This commit was SVN r27743.
 2013-01-04 20:47:25 +00:00
Ralph Castain
cc29f8ff95 Attempt to fix the stupid Cray PMI problem 
This commit was SVN r27742.
 2013-01-04 02:53:42 +00:00
Nathan Hjelm
6a9ab9b221 Change orte_startup_timeout to be in seconds and remove the 10 second maximum 
This commit was SVN r27741.
 2013-01-03 23:56:34 +00:00
Nathan Hjelm
84e34ee0d7 Fix a bug in the uGNI btl that could cause certain descriptor callbacks to be called twice. 
There was a race condition in the eager get protocol where the RDMA complete message could be received before the local completion of the SMSG message that started the eager get protocol.

cmr:v1.7

This commit was SVN r27740.
 2013-01-03 23:11:13 +00:00
Samuel Gutierrez
a159bfaf25 sm BTL initialization via modex, as discussed at last year's meeting. 
This commit was SVN r27739.
 2013-01-03 21:52:20 +00:00
Ralph Castain
81a8e21939 Need to have the event thread running during init/finalize, but we still have a problem with cleanup - so comment out the event_base_free for now. 
This commit was SVN r27738.
 2013-01-03 02:16:57 +00:00
Ralph Castain
c65de32218 Cleanup the PMI subsystems to support Sam's "rml-less" shared memory wireup. Only retrieve keys that are specifically requested, and only when they are requested. Let string values be segmented across multiple keys, but don't do it for anything else. 
This commit was SVN r27737.
 2013-01-03 02:16:10 +00:00
Ralph Castain
ec2f6abb69 Cleanup minor memory leak 
This commit was SVN r27736.
 2013-01-03 02:04:54 +00:00
George Bosilca
a1754dfe31 Don't leave the cid registered in any case. 
This commit was SVN r27735.
 2013-01-02 18:32:46 +00:00
Matthias Jurenz
1de078c888 Changes to OTF: 
- configure: fixed warnings from automake 1.12.x

Changes to VT:
	- general:
		- incremented version number to 5.14.2
	- configure:
		- fixed warnings from automake 1.12.x
	- VT libs / MPI wrappers:
		- do initialize VT and enter the dummy main function ("user") if MPI_Initialized is the very first event to be recorded (fixed assertion error)
		- leave the dummy main function on the same thread where it is entered (fixes potential stack underflow)

This commit was SVN r27734.
 2013-01-02 13:42:17 +00:00
Mike Dubman
889d46e966 support for FCA v3.0 and up 
This commit was SVN r27731.
 2012-12-31 05:49:22 +00:00
Ralph Castain
c1690f403e Remove non-existent file 
This commit was SVN r27730.
 2012-12-29 02:21:50 +00:00
Ralph Castain
68329b516c Cleanup stale test codes 
This commit was SVN r27729.
 2012-12-28 16:52:51 +00:00
Ralph Castain
07194c6564 Add platform files 
This commit was SVN r27728.
 2012-12-28 16:52:21 +00:00
Ralph Castain
2353803a0f Bend cluster now has slurm 
This commit was SVN r27727.
 2012-12-28 03:05:51 +00:00
Ralph Castain
d482c6acc1 Improve the error message a bit 
This commit was SVN r27726.
 2012-12-28 03:02:07 +00:00
Ralph Castain
fb5079a310 Update the pmi detection to report a more meaningful error message when with-pmi is specified but the pmi.h file cannot be found 
This commit was SVN r27725.
 2012-12-27 04:57:30 +00:00
Mike Dubman
b6d50a5733 Performance optimizations by alexm: 
* btl sendi(): if message can be send inline try to avoid signal
* signal is requested one per 64 or when
    there are no send wqes 
    when message can not be send inline 
    any other btl method then sendi()

This commit was SVN r27724.
 2012-12-26 10:19:12 +00:00
Ralph Castain
d1163ebbf2 Ensure we cleanup DFS worker threads during finalize to avoid segfaulting in MCA param cleanup 
This commit was SVN r27723.
 2012-12-25 21:17:35 +00:00
Ralph Castain
64da742d5f Remove the orte_finalize_event variable - no longer needed 
This commit was SVN r27722.
 2012-12-25 19:33:20 +00:00
Ralph Castain
cada035f38 Fix the segfault problem in the orteds - turns out it only occurred with progress threads enabled. Ensure the thread gets started at the right time (at the end of init), although the event base gets created earlier. Remove the finalize event as we can instead use the loopbreak call to exit the event loop. 
This commit was SVN r27721.
 2012-12-25 19:30:18 +00:00
Ralph Castain
c8e34813b6 THIS IS A TEMPORARY FIX - do not finalize opal as the parameter system has been broken and will segfault when finalized. 
THIS PATCH MUST BE REMOVED WHEN THE PARAMETER SYSTEM HAS BEEN FIXED.

This commit was SVN r27720.
 2012-12-24 18:42:19 +00:00
Ralph Castain
b1925d35c7 Silence asprintf warnings in ompi_info, add libs to build under Ubuntu 
This commit was SVN r27719.
 2012-12-23 19:54:44 +00:00
George Bosilca
ed77868984 No need for event.h in the SM BTL. 
This commit was SVN r27718.
 2012-12-23 19:33:53 +00:00
Ralph Castain
72bea688f1 Fix typo 
This commit was SVN r27717.
 2012-12-23 18:13:39 +00:00
Ralph Castain
852a709c0e Add libopen-pal to the libraries as all these tools directly reference OPAL functions, and the list of OS's that don't support indirect linking grows (Mac and Ubuntu, for now). 
This commit was SVN r27716.
 2012-12-23 15:54:05 +00:00
Brian Barrett
b2efc9ffa9 On OpenBSD, both sys/mount.h and sys/sysctl.h require sys/param.h in order 
to compile.  With recent Autoconf versions, AC_CHECK_HEADERS only succeeds
if the header compiles, so need to check these two with sys/param.h
explicitly included in the search list...

This commit was SVN r27715.
 2012-12-22 16:32:26 +00:00