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Граф коммитов

24865 Коммитов

Автор SHA1 Сообщение Дата
Karol Mroz
e1c64e6e59 opal: standardize on max hostname length
Define OPAL_MAXHOSTNAMELEN to be either:
  (MAXHOSTNAMELEN + 1) or
  (limits.h:HOST_NAME_MAX + 1) or
  (255 + 1)

For pmix code, define above using PMIX_MAXHOSTNAMELEN.

Fixup opal layer to use the new max.

Signed-off-by: Karol Mroz <mroz.karol@gmail.com>
2016-04-24 08:19:47 +02:00
Nathan Hjelm
fdd1ff7c29 Merge pull request #1562 from hjelmn/opal_coverity
mca/base: fix coverity issue
2016-04-19 14:29:05 -06:00
Nathan Hjelm
3f15d442de Merge pull request #1561 from hjelmn/mpool_rewrite
rcache/base: add missing file to tarball
2016-04-19 12:00:06 -06:00
Nathan Hjelm
b3abd5380b Merge pull request #1560 from hjelmn/new_hooks_update
Patcher hooks bug fixes
2016-04-19 11:39:30 -06:00
Nathan Hjelm
16c28399cd rcache/base: add missing file to tarball
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-19 11:03:38 -06:00
Nathan Hjelm
d981a9fc7d patcher/overwrite: fix compile error on x86
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-19 10:16:39 -06:00
Nathan Hjelm
5bc9d9d1f8 patcher/linux: fix compiler warnings
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-19 10:16:20 -06:00
Nathan Hjelm
1147fb3dd1 patcher/linux: ensure component is only enabled on Linux
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-19 10:16:00 -06:00
Nathan Hjelm
178c97b406 Merge pull request #1557 from hjelmn/new_hooks_update
memory/patcher: munmap hook could be called from within a malloc() implementation
2016-04-18 17:29:05 -06:00
Nathan Hjelm
a8e90e8796 memory/patcher: munmap hook could be called from within a malloc() implementation
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-18 15:00:07 -06:00
Nathan Hjelm
95c06cf959 Merge pull request #1556 from hjelmn/opal_coverity
memory/patcher: fix coverity warning
2016-04-18 14:55:28 -06:00
Joshua Ladd
1c6218804b Merge pull request #1542 from igor-ivanov/pr/oshmem-spec1.3
Pr/oshmem spec1.3
2016-04-18 15:22:48 -04:00
Nathan Hjelm
7f271171f6 memory/patcher: fix coverity warning
Fix CID 1358512:  Error handling issues  (NEGATIVE_RETURNS):

C libraries usually handle read (-1, ...) fine but it is safer to
avoid calling read with a negative handle. Added negative file
descriptor check.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-18 11:29:20 -06:00
Igor Ivanov
75050b44a2 oshmem: Align OSHMEM API with spec v1.3 (extension api changes)
openshmem.org specification does not mention about extension api
but there is an agreemnet to do these changes for related ex api too.
see
Annex G:
Version 1.3
Added const to every read-only pointer argument
2016-04-18 19:38:16 +03:00
Igor Ivanov
157f81b699 oshmem: Align OSHMEM API with spec v1.3 (Added const to every read-only pointer argument)
Annex G:
Version 1.3
Added const to every read-only pointer argument
2016-04-18 19:25:31 +03:00
Igor Ivanov
c02d0b7161 oshmem: Align OSHMEM API with spec v1.3 (shmem_lock change signature)
Annex G:
Version 1.3
Added volatile to remotely accessible pointer argument in
SHMEM_LOCK
See Sections 8.9.1
2016-04-18 19:25:18 +03:00
Igor Ivanov
a52b0797fc oshmem: Align OSHMEM API with spec v1.3 (shmem_wait change signature)
Annex G:
Version 1.3
Added volatile to remotely accessible pointer argument in SHMEM_WAIT
See Sections 8.7.1
2016-04-18 19:24:55 +03:00
Gilles Gouaillardet
d96919638f pmix: remote autogenerated file and update .gitignore
removed: opal/mca/pmix/pmix114/pmix/src/include/private/autogen/config.h.in
2016-04-18 12:57:41 +09:00
rhc54
2be790447a Merge pull request #1554 from rhc54/topic/114update
Roll to PMIx 1.1.4rc2 - replaces some code that was incorrectly remov…
2016-04-16 19:35:38 -07:00
Ralph Castain
b009e58d25 Roll to PMIx 1.1.4rc2 - replaces some code that was incorrectly removed in prior update 2016-04-16 18:24:24 -07:00
rhc54
8cce6df688 Merge pull request #1553 from rhc54/topic/114update
Update to official PMIx 1.1.4rc1
2016-04-16 17:31:19 -07:00
Ralph Castain
8ff114e668 Update to official PMIx 1.1.4rc1 2016-04-15 21:47:46 -07:00
rhc54
fde5183f90 Merge pull request #1550 from rhc54/topic/jeff
Per request from Jeff, aggregate all help messages during MPI_Init th…
2016-04-15 16:50:13 -07:00
Ralph Castain
7829fbdc29 Per request from Jeff, aggregate all help messages during MPI_Init thru MPI_Finalize as long as the RTE is available 2016-04-15 13:37:22 -07:00
rhc54
6b38c0e1ef Merge pull request #1548 from rhc54/topic/pmix114
Roll to PMIx 1.1.4rc1 and remove the PMIx 1.2.0 directory...
2016-04-15 12:55:15 -07:00
Ralph Castain
449ec41532 Roll to PMIx 1.1.4rc1 and remove the PMIx 1.2.0 directory as the community has decided to not do that release version. This incorporates a number of bug fixes that have been identified and repaired in the PMIx and OMPI code bases. Also includes several minor corrections to the PMIx code so it now supports run-thru without hanging on collectives involving a process that exits 2016-04-15 10:11:11 -07:00
KAWASHIMA Takahiro
e854404570 fortran: Change the line order of #pragma
No code change.
These lines were introduced in my recent commit 17d32ac.
I had a editing mistake and the order is different from
other lines/files.
2016-04-15 12:49:03 +09:00
Nathan Hjelm
3245428e82 Merge pull request #1535 from kawashima-fj/pr/osc-pt2pt-header-fix
osc/pt2pt: Fix a struct name typo
2016-04-14 15:55:25 -06:00
Jeff Squyres
4566286b9a Merge pull request #1538 from kawashima-fj/pr/fortran-binding-fix
fortran: Fix many Fortran binding bugs
2016-04-14 17:18:59 -04:00
Nathan Hjelm
330302c4b4 Merge pull request #1534 from kawashima-fj/pr/parallel-rma-fix
osc/pt2pt: Fix tag conflicts on parallel RMA communications
2016-04-14 15:13:32 -06:00
Jeff Squyres
fdf33674b3 Merge pull request #1532 from kmroz/wip-hindexed-cleanup-1
romio,java: cleanup deprecated hindexed call
2016-04-14 17:07:31 -04:00
Jeff Squyres
2374d8fcf7 Merge pull request #1536 from kawashima-fj/pr/inplace-fix
mpi/c, mpi/fortran: Fix `MPI_IN_PLACE`-related bugs
2016-04-14 15:56:55 -04:00
Nathan Hjelm
b4e5b5c09e Merge pull request #1531 from hjelmn/bml
bml: always enable the bml
2016-04-14 10:22:33 -06:00
Nathan Hjelm
4d9c047f04 Merge pull request #1546 from hjelmn/mpool_rewrite
rcache: add missing file
2016-04-14 10:22:09 -06:00
Nathan Hjelm
9046424be5 rcache: add missing file
Fixes #1545

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-14 09:21:09 -06:00
rhc54
d76f0ba2a8 Merge pull request #1543 from rhc54/topic/oversub
Ensure that we exit with a non-zero status when oversubscribe fails
2016-04-14 07:11:24 -07:00
Ralph Castain
4b3995dd27 Trivial change to silence warning 2016-04-14 05:54:02 -07:00
Ralph Castain
1fa236b26c Ensure that we exit with a non-zero status when oversubscribe fails 2016-04-14 05:51:10 -07:00
Nathan Hjelm
1e6b4f2f55 Merge pull request #1495 from hjelmn/new_hooks
Add new patcher memory hooks
2016-04-13 18:19:23 -06:00
Nathan Hjelm
c2b6fbb124 opal/memory: move initialization to first rcache creation
Because of the removal of the linux memory component it is no longer
necessary to initialize the memory component in opal_init(). This
commit moves the initialization to the creation of the first rcache
component.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-13 17:21:46 -06:00
Nathan Hjelm
80ec79cfc8 memory/patcher: updates to memory hooks
This commit fixes bugs that can cause crashes and memory corruption
when the mremap hook is called. The problem occurs because of the
ellipses (...) in the mremap intercept function. The ellipses cover
the optional new_addr argument on Linux. This commit removes the
ellipses and adds an explicit 5th argument.

This commit also adds a hook for shmdt. The code only works on Linux
at the moment as it needs to read /proc/self/maps to determine the
size of the shared memory segment.

Additionally, this commit removes the mmap hook. There is no
apparent benefit for detecting mmap(..., PROT_NONE, ...) and it
seems to cause problems when threads are in use.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-13 17:20:24 -06:00
Nathan Hjelm
91bcab93cb opal/memory: remove ptmalloc2
This commit removes the ptmalloc2 memory hooks. This is necessary in
order to support lazy registration of memory hooks. A feature that is
not supported by the ptmalloc hooks but is supported by the new
patcher hooks.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-13 17:18:15 -06:00
Nathan Hjelm
27f8a4e806 opal: add code patcher framework
This commit adds a framework to abstract runtime code patching.
Components in the new framework can provide functions for either
patching a named function or a function pointer. The later
functionality is not being used but may provide a way to allow memory
hooks when dlopen functionality is disabled.

This commit adds two different flavors of code patching. The first is
provided by the overwrite component. This component overwrites the
first several instructions of the target function with code to jump to
the provided hook function. The hook is expected to provide the full
functionality of the hooked function.

The linux patcher component is based on the memory hooks in ucx. It
only works on linux and operates by overwriting function pointers in
the symbol table. In this case the hook is free to call the original
function using the function pointer returned by dlsym.

Both components restore the original functions when the patcher
framework closes.

Changes had to be made to support Power/PowerPC with the Linux
dynamic loader patcher. Some of the changes:

 - Move code necessary for powerpc/power support to the patcher
   base. The code is needed by both the overwrite and linux
   components.

 - Move patch structure down to base and move the patch list to
   mca_patcher_base_module_t. The structure has been modified to
   include a function pointer to the function that will unapply the
   patch. This allows the mixing of multiple different types of
   patches in the patch_list.

 - Update linux patching code to keep track of the matching between
   got entry and original (unpatched) address. This allows us to
   completely clean up the patch on finalize.

All patchers keep track of the changes they made so that they can be
reversed when the patcher framework is closed.

At this time there are bugs in the Linux dynamic loader patcher so
its priority is lower than the overwrite patcher.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-13 17:16:13 -06:00
Nathan Hjelm
b1670f844d contrib/platform: don't disable dlopen
The --enable-static gives us what we want: statically linked components.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-13 17:16:12 -06:00
Nathan Hjelm
4cac623aeb opal/patch: add call to check if binary patching is supported
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-13 17:16:12 -06:00
Nathan Hjelm
11e2d7886e opal/memory: update component structure
This commit makes it possible to set relative priorities for
components. Before the addition of the patched component there was
only one component that would run on any system but that is no longer
the case. When determining which component to open each component's
query function is called and the one that returns the highest priority
is opened. The default priority of the patcher component is set
slightly higher than the old ptmalloc2/ummunotify component.

This commit fixes a long-standing break in the abstration of the
memory components. ompi_mpi_init.c was referencing the linux malloc
hook initilize function to ensure the hooks are initialized for
libmpi.so. The abstraction break has been fixed by adding a memory
base function that calls the open memory component's malloc hook init
function if it has one. The code is not yet complete but is intended
to support ptmalloc in 2.0.0. In that case the base function will
always call the ptmalloc hook init if exists.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-13 17:14:51 -06:00
Nathan Hjelm
7aa03d66b3 opal/memory: add support for patch based memory hooks
This commit adds support for runtime binary patching. The support is
broken down into two parts: util/opal_patcher.[ch] which contains the
functionality for runtime patching of symbols, and mca/memory/patcher
which patches the various symbols needed to provide support for memory
hooks. This work is preliminary and is based off work donated by IBM.

The patcher code is disabled if dlopen is disabled.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-13 17:14:31 -06:00
rhc54
e500ea2c8c Merge pull request #1540 from rhc54/topic/map
Fix map-by node and do-not-launch
2016-04-13 10:29:28 -07:00
Ralph Castain
437f5b4289 Fix map-by node and do-not-launch 2016-04-13 09:21:19 -07:00
KAWASHIMA Takahiro
4944ba7edc datatype: Fix incorrect predefined datatype names and other datatype bugs (#1537)
* datatype: Fix a incorrect datatype name of `MPI_UNSIGNED`

Name of predefined datatype for C `unsigned int` gotten by
`MPI_TYPE_GET_NAME` should be `MPI_UNSIGNED`, not `MPI_UNSIGNED_INT`.

* datatype: Fix incorrect datatype names of `MPI_C_BOOL` and `MPI_CXX_*`

Names of predefined datatypes gotten by `MPI_TYPE_GET_NAME` are:

after this commit (correct) | before this commit (incorrect)
-----------------------------------------------------------
MPI_C_BOOL                    MPI_BOOL
MPI_CXX_BOOL                  MPI_BOOL
MPI_CXX_FLOAT_COMPLEX         MPI_C_FLOAT_COMPLEX
MPI_CXX_DOUBLE_COMPLEX        MPI_C_DOUBLE_COMPLEX
MPI_CXX_LONG_DOUBLE_COMPLEX   MPI_C_LONG_DOUBLE_COMPLEX

* datatype: Fix a incorrect datatype name of `MPI_2DOUBLE_PRECISION`

Name of the predefined datatype for Fortran two `double precision`
gotten by `MPI_TYPE_GET_NAME` should be `MPI_2DOUBLE_PRECISION`,
not `MPI_2DBLPREC`.

This bug was caused by setting the name to `opal_datatype_t::name`
instead of `ompi_datatype_t::name`.

* datatype: Fix `MPI_UNSIGNED_CHAR` internal flag

`MPI_UNSIGNED_CHAR` is an integer type.

* ompi/cxx: Fix C++ `MPI::LONG_DOUBLE_INT` definition

Just a typo fix. Without this fix, `MPI::MAX_LOC` and `MPI::MIN_LOC`
cannot be used with `MPI::LONG_DOUBLE_INT` in C++ programs.

I know the C++ binding is obsolete, but fixing this is harmless.

* Add FUJITSU copyright
2016-04-12 20:17:46 +02:00