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Граф коммитов

23700 Коммитов

Автор SHA1 Сообщение Дата
Howard Pritchard
d899320574 odls/alps: close the directory
Close the /proc/self/fd dir after checking for open fds.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-10-06 11:13:44 -07:00
Nathan Hjelm
81757d411a Merge pull request #955 from hjelmn/mpool_update
opal/mpool: add support for passing access flags to register
2015-10-06 08:42:56 -06:00
Edagr Gabriel
8af80cd02c update the interfaces of the sharedfp addproc component to match the changes made in the const commit. 2015-10-06 07:54:38 -05:00
Mike Dubman
258884749e Merge pull request #976 from igor-ivanov/pr/oshmem-man.1
oshmem: Add man.1 pages for oshmem tools
2015-10-06 08:17:00 +03:00
Gilles Gouaillardet
de8de65b07 coll/tuned: remove unused prototypes from coll_tuned.h 2015-10-06 09:07:48 +09:00
Nathan Hjelm
59aa93e1b6 opal/mpool: add support for passing access flags to register
This commit adds a access_flags argument to the mpool registration
function. This flag indicates what kind of access is being requested:
local write, remote read, remote write, and remote atomic. The values
of the registration access flags in the btl are tied to the new flags
in the mpool. All mpools have been updated to include the new argument
but only the grdma and udreg mpools have been updated to make use of
the access flags. In both mpools existing registrations are checked
for sufficient access before being returned. If a registration does
not contain sufficient access it is marked as invalid and a new
registration is generated.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-05 13:53:55 -06:00
Mike Dubman
260905b9f4 Merge pull request #972 from miked-mellanox/topic/master_patches_from_mlnx_platform
Add in-finalize indicator, fca fall back to prev barrier if in-finalize
2015-10-05 20:37:59 +03:00
Rolf vandeVaart
81346949b8 Merge pull request #975 from rolfv/pr/fix-6.0-compile-error
Fix typo that caused compile error
2015-10-05 13:11:35 -04:00
Nathan Hjelm
e0d9e6553f mpool: mpi_show_mpi_alloc_mem_leaks don't print out message if there are no leaks
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-05 10:48:56 -06:00
Rolf vandeVaart
fc83400123 Fix typo that caused compile error 2015-10-05 11:44:40 -04:00
Igor Ivanov
d379873443 oshmem: Add man.1 pages for oshmem tools
This changes add man pages for oshrun, oshcc and oshfort as well as
depricated shmemrun, shmemcc and shmemfort.
2015-10-05 15:41:28 +03:00
Gilles Gouaillardet
2d1a8fa920 fortran: do not build the f08 bindings if PMPI is not built 2015-10-05 09:43:46 +09:00
Mike Dubman
588dcc3e5c Merge pull request #971 from open-mpi/revert-961-topic/platform_log_msgs
Revert "BUILD: log applied patches into config.log"
2015-10-04 09:43:23 +03:00
Mike Dubman
e8d7373b14 COLL/FCA: revert to prev barrier if called from finalize
FCA barrier may not complete if FCA progress is not called periodically.
PMI/PMI2 API that can be used in rte barrier has no provision for calling
external progress function.

So it is possible that during finalize some ranks will be stuck
in fca barrier while others are in PMI barrier.
2015-10-04 09:40:19 +03:00
Mike Dubman
5bebed45eb OMPI: set "in finalize" indicator in finalize flow 2015-10-04 09:39:37 +03:00
Mike Dubman
e280be3dff Revert "BUILD: log applied patches into config.log" 2015-10-04 08:12:05 +03:00
Nathan Hjelm
d579a07383 Merge pull request #970 from hjelmn/more_coverity
fcoll/two_phase: fix new coverity errors
2015-10-03 08:27:41 -06:00
Jeff Squyres
d539c01c0f NEWS: Sync v1.10.1 bullets with release branch 2015-10-03 05:45:05 -04:00
Nathan Hjelm
5122327727 fcoll/two_phase: fix new coverity errors
Fix CID 1325467: use after free

Remove extra free of aggregator_list.

Fix CID 1325466: resource leak

Fix typo in prior coverity fix.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-10-02 21:38:31 -06:00
Nathan Hjelm
c99a8a55ba Merge pull request #967 from hjelmn/libnbc_fix
op: allow user operations in ompi_3buff_op_reduce
2015-10-02 18:48:32 -06:00
Nathan Hjelm
57d3b83297 op: allow user operations in ompi_3buff_op_reduce
This commit allows user operations to be used in the
ompi_3buff_op_reduce function. This fixes an issue identified in:

http://www.open-mpi.org/community/lists/devel/2014/04/14586.php

and

http://www.open-mpi.org/community/lists/users/2015/10/27769.php

The fix is to copy source1 into the target then call the user op
function with source2 and target.

Fixes #966

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-02 10:35:21 -06:00
Nathan Hjelm
eb79edff33 Merge pull request #963 from hjelmn/ompi_coverity
fcoll/two_phase: fix coverity errors
2015-10-02 10:22:24 -06:00
Devendar Bureddy
dc982085c6 Merge pull request #964 from bureddy/master
HCOLL: Add alltoallv interface
2015-10-02 07:48:16 -07:00
Devendar Bureddy
243b75aa80 HCOLL: Add alltoallv interface 2015-10-02 01:51:33 +03:00
Nathan Hjelm
95b95e19af fcoll/dynamic: fix coverity errors
Fixes CID 72320: Explicit NULL dereferenced

On error it is possible that the blocklen_per_process array is
NULL. Change the NULL check before the free to check for non-NULL on
the array not the array element. Also clean up allocation of this
array to use calloc instead of malloc + setting each element to NULL.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-01 14:38:09 -06:00
Nathan Hjelm
09df7aa205 fcoll/two_phase: fix coverity errors
Fixes CIDs 72300, 72344, 1196764-1196768, 72300: Resource leaks

Mulitple allocated arrays are going out of scope at the end of
mca_fcoll_two_phase_file_write_all. Free these arrays. Also removed
the extraneous NULL checks since free (NULL) is safe in C.

Change returns to goto exit where the allocated resources are freed.

Fixes CIDs 72285-72292, 72297, 72298: Resource leaks

Change all appropriate return statements to goto exit to ensure that
all resources are freed. Also removed the NULL checks since free
(NULL) is safe in C.

Fixes CIDs 72295, 72296: Resource leaks

Moved free of requests and recv_types to after exit label. This will
ensure these are freed on error.

Also added a loop and statement to free send_buf which is going out of
scope at the end of the function.

Fixes CIDs 72336-72240, 735197, 735198: Resource leaks

Moved the exit label before to before the resources are released and
changed all appropriate return statements to goto exit. Also removed
extraneous NULL checks because free (NULL) is safe in C.

Fixes CIDs 72341, 72343, 1196805-1196809: Resource leaks

Free all resources after exit label and change return statements to
goto exit to ensure all resources are freed on error.

Fixes CID 1269973: Unused value

Check return code of ompi_request_wait_all. If it fails jump to the
exit.

Fixes CID 714119: Dereference before NULL check

Wrong value checked in conditional.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-01 14:38:09 -06:00
Mike Dubman
1cac0601b6 Merge pull request #961 from miked-mellanox/topic/platform_log_msgs
BUILD: log applied patches into config.log
2015-10-01 12:02:55 +03:00
Mike Dubman
5d83aa8cdc BUILD: log applied patches to config.log 2015-10-01 10:06:17 +03:00
Gilles Gouaillardet
dc883cff8d opal/util: fix parse_ipv4_dots prototype 2015-10-01 14:03:08 +09:00
rhc54
8f4e1133cd Merge pull request #960 from rhc54/topic/cov
Cleanup some coverity warnings
2015-09-30 12:33:09 -07:00
Ralph Castain
8f6855459d Cleanup some coverity warnings 2015-09-30 10:33:53 -07:00
Nathan Hjelm
33f2a2d35a Merge pull request #957 from hjelmn/ugni_exclusivity
btl/ugni: adjust exclusivity below sm and vader
2015-09-30 10:48:52 -06:00
Nathan Hjelm
9d9450a054 Merge pull request #958 from hjelmn/man_pages
ompi/man: fix typos in formatting
2015-09-30 07:30:59 -06:00
Mike Dubman
2333f8249f Merge pull request #914 from miked-mellanox/topic/platform_vendor_patches
BUILD: add support for platform specific patches
2015-09-30 09:22:41 +03:00
Nathan Hjelm
6c97ccad99 Merge pull request #956 from hjelmn/osc_rdma_updates
osc/rdma: fix incorrect assert
2015-09-29 23:33:36 -06:00
Nathan Hjelm
fbaa79835f ompi/man: fix typos in formatting
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-09-29 23:32:44 -06:00
Gilles Gouaillardet
0445484820 ras: remove orte_ras_proc_t and associated code 2015-09-30 08:52:52 +09:00
Nathan Hjelm
3c33a8e94b btl/ugni: adjust exclusivity below sm and vader
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-09-29 15:40:35 -06:00
Nathan Hjelm
5fd9c35957 osc/rdma: fix incorrect assert
This commit fixes MTT failures in debug builds.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-09-29 15:37:40 -06:00
Nathan Hjelm
7b8ec48c68 osc/rdma: fix typos inarguments to btl_atomic_[f]op
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-09-29 08:09:00 -06:00
rhc54
5a9a01de3d Merge pull request #951 from rhc54/topic/modex
Don't set the return value pointer to NULL as it actually is required…
2015-09-29 05:57:38 -07:00
Gilles Gouaillardet
7cc14ee6f6 orte/rmaps: silence warning 2015-09-29 16:05:52 +09:00
Mike Dubman
7502d2a779 BUILD: add support for vendor specific patches
./configure --with-platform=contrib/platform/$name will apply all patches
found in contrib/platform/$name.patches/ directory during "configure" phase.

It allows vendors to distribute not-accepted or vendor-specific patches as
part of standard ompi tarball and reduce burden of keeping private repos.

Added:

* VPATH support
* $srcdir/.platform_patches file created if patches already applied
* configure will fail with error if patch cannot be applied (using dry-run)
* configure will fail if patches modifying *.[am,m4] files (unsupported)
* remove unused patch_errors var
* set with_ident_string if platform file applied patches
2015-09-29 09:47:40 +03:00
Ralph Castain
ec5d001538 Don't set the return value pointer to NULL as it actually is required to point to real storage - just return an error code if a modex recv doesn't succeed. 2015-09-28 20:45:50 -07:00
Gilles Gouaillardet
57ecce4e0f ompi_proc_complete_init: always reset u16ptr
if a key is not found, u16ptr is set to NULL and following
opal_value_unload calls might fail
2015-09-29 11:41:51 +09:00
Gilles Gouaillardet
2ac09d5a8d pci: do not probe PCI topology on Solaris unless effective uid is root
Otherwise libpciaccess sends a big error message to stderr:
  Error opening /devices/pci@0,0:reg: Permission denied

(cherry picked from commit open-mpi/hwloc@d93c7c0960)
2015-09-29 09:42:58 +09:00
Nathan Hjelm
12bd300c40 Merge pull request #929 from hjelmn/add_procs
Update add_procs support
2015-09-28 17:29:13 -06:00
Nathan Hjelm
a5123b03d2 Merge pull request #950 from hjelmn/ompi_coverity
more ompi coverity fixes
2015-09-28 17:28:55 -06:00
Nathan Hjelm
6b83fa2f58 ompi/comm: fix coverity errors
Fixes CID 1323841: Logically dead code

Wrong value in conditional. Should be newcomp not newcomm.

Fixes CID 1269762: Explicit null dereference

ompi_group_incl could return an error and not set local_group. Add a
check to ensure ompi_group_incl succeeded before incrementing the proc
count.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-09-28 15:55:19 -06:00
Nathan Hjelm
6611c000c9 Fix coverity warnings
Fix CID 1315271: Constant expression result

The intent of this conditional is to not produce a peruse event for
probe or mprobe requests. Coverity is correct that the expression is
always true. Changed the || to && to fix. Also moved the conditional
within an OMPI_WANT_PERUSE to ensure the conditional is not evaluated
if peruse is disabled.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-09-28 15:35:25 -06:00