ports/openmpi
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Gilles Gouaillardet
d54e54538a orted/orted_submit: plug a memory leak 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-24 09:13:30 +09:00
Gilles Gouaillardet
189da7fdab pmix2x: plug a memory leak in _event_hdlr() 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-24 09:13:30 +09:00
Gilles Gouaillardet
acbc32d3b2 pmix2x: plug a memory leak in opal_lkupcbfunc() 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-24 09:13:29 +09:00
Gilles Gouaillardet
b5b21043c4 pmix2x: plug a memory leak in _reg_nspace() 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-24 09:13:29 +09:00
Gilles Gouaillardet
0f47310a75 pmix2x/pmix2x_client: plug misc memory leaks 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-24 09:13:29 +09:00
Gilles Gouaillardet
f4dc7e4134 orted/orted_submit: plug misc memory leaks 
- always invoke init_globals() before opal_cmd_line_parse(orte_cmd_line, ...)
- plug more leaks in init_globals()
- remove unused env_val and personalities fields from orte_cmd_options_t

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-24 09:13:29 +09:00
Gilles Gouaillardet
d5aa310884 mpiext/affinity: initialize all output variables of OMPI_Affinity_str() 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-24 09:13:29 +09:00
Gilles Gouaillardet
501eb8dc7e ompio: plug misc memory leaks 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-24 09:13:19 +09:00
Gilles Gouaillardet
1a6c17ec7d opal/util: plug a memory leak 
by using opal_setenv() instead of putenv()

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-24 09:12:47 +09:00
Gilles Gouaillardet
d0629f18c2 coll/libnbc: optimize size one communicators 
simply "return" with ompi_request_empty if the communicator size is 1

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-24 09:12:47 +09:00
Gilles Gouaillardet
9d6e0482a6 orte/data_server: plug a memory leak in orte_data_server() 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-24 09:12:47 +09:00
Gilles Gouaillardet
0bdc594b2e rml/base: plug a memory leak in orte_rml_API_recv_cancel() 
simply return when the orte event thread has gone

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-24 09:12:47 +09:00
Gilles Gouaillardet
6f2ca5809b man: fix a typo in MPI_Win_get_name() 
Thanks Nicolas Joly for the report

Fixes open-mpi/ompi#2782

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-24 09:08:13 +09:00
Jeff Squyres
e7588f0509 Merge pull request #2785 from edgargabriel/pr/sharedfp-append-fix 
common/ompio: update comment based on the previous commit.
 2017-01-23 14:06:13 -08:00
Edgar Gabriel
4dc09de3b8 common/ompio: update comment based on the previsou commit. 
No source code changed.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
 2017-01-23 13:38:05 -06:00
Ralph Castain
f3920828ed Merge pull request #2784 from rhc54/topic/pmixup 
Update to latest PMIx master
 2017-01-23 11:01:19 -08:00
Edgar Gabriel
2215f29849 Merge pull request #2783 from edgargabriel/pr/sharedfp-append-fix 
Pr/sharedfp append fix
 2017-01-23 10:38:27 -06:00
Ralph Castain
8c960bae8d Update to latest PMIx master 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-01-23 07:07:40 -08:00
Edgar Gabriel
3eae0eecd0 io/ompio: change default for sharedfp_lazy_open parameter 
Revert the logic of io_ompio_sharedfp_lazy_open. The user now has to explicitely
disable shared fp in order for the structures not to be allocated.
Otherwise, resetting the shared fp e.g. in case the file was opened
in append mode will not work correctly, the code could deadlock.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
 2017-01-23 08:59:22 -06:00
Edgar Gabriel
d3a8d38cc6 common/ompio: correctly position shared fp in append mode 
Fixes a bug reported on the mailing list. ompio did only reposition the individual
file pointer when the file was opened in append mode. Set the shared file
pointer also to point to the end of the file, similarly to the individual
file pointer.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
 2017-01-23 08:59:05 -06:00
Ralph Castain
a61f7bdb26 Merge pull request #2780 from rhc54/topic/conn 
Ensure we properly set the "shutting down" flag so connection drops by downstream peers are properly handled.
 2017-01-23 06:40:28 -08:00
Ralph Castain
e7b12913b4 Ensure we properly set the "shutting down" flag so connection drops by downstream peers are properly handled. 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-01-23 04:00:24 -08:00
Ralph Castain
0b4648b3a7 Merge pull request #2779 from hjelmn/oob_param 
oob/base: fix num_threads registration type
 2017-01-22 14:09:06 -08:00
Nathan Hjelm
954a4b7be3 oob/base: fix num_threads registration type 
This commit fixes a bug in the registration of the num_threads MCA
variable. The variable is of type int and was being registered as
a boolean.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2017-01-22 14:02:34 -07:00
Ralph Castain
c549f82cdc Merge pull request #2778 from rhc54/topic/threads 
Ensure that oob/base level data is always accessed in the oob/base event thread. Make debruijn the default routed component
 2017-01-22 11:21:34 -08:00
Ralph Castain
ac4fcd3f97 Ensure that oob/base level data is always accessed in the oob/base event thread. Make debruijn the default routed component 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-01-22 10:33:32 -08:00
Ralph Castain
adbcefebf8 Merge pull request #2777 from rhc54/topic/spawn 
Fix comm_spawn and orte-dvm by resetting all used "node mapped" flags after building the child list
 2017-01-22 08:07:08 -08:00
Ralph Castain
6560617c04 Fix comm_spawn and orte-dvm by resetting all used "node mapped" flags after building the child list 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-01-22 05:55:53 -08:00
Ralph Castain
59eafebf66 Merge pull request #2776 from rhc54/topic/fix 
Add missing flag set to ensure nodes do not get double-added to job map.
 2017-01-21 20:54:37 -08:00
Ralph Castain
639cdd4f9d Add missing flag set to ensure nodes do not get double-added to job map. 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-01-21 20:06:50 -08:00
Ralph Castain
164fc6436d Merge pull request #2775 from rhc54/topic/oob3 
More scaling efficiencies
 2017-01-21 15:45:57 -08:00
Ralph Castain
e8e5f81abd Something not quite right about the revised allocation algos, so revert them while retaining the larger initial and threshold sizes 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-01-21 14:37:45 -08:00
Ralph Castain
be3ef77739 Improve packing efficiency by raising the initial buffer size and modifying the extension code. Flag if a job map has had its nodes added so we don't have to loop repeatedly to check it. 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-01-21 14:03:19 -08:00
Ralph Castain
466cbd4d29 Rework the threading in oob/tcp so that daemons (including mpirun) use multiple progress threads to get messages out to their children, and so that the oob/base uses a separate one to setup sends. This allows the daemon cmd processor to execute in parallel with relay of messages, which significantly reduces launch times at scale 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-01-21 13:26:19 -08:00
Ralph Castain
917b88a2d5 Merge pull request #2771 from rhc54/topic/zlib 
Check for zlib.h
 2017-01-20 13:44:43 -08:00
Ralph Castain
08b5fe46db Check for zlib.h 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-01-20 11:55:11 -08:00
Open MPI Team
dba106ee10 pmix nightly tarball: only save 7 days 
We don't have infinite disk space: only save 7 days of builds, not 28.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2017-01-20 19:16:43 +00:00
Open MPI Team
96a90ffab3 remove-old.pl: update / fix minor bugs 
- Ensure that $to_delete is always defined
- Re-indent to 4 spaces for readability
- Don't only delete files -- it's ok to delete directories, too
- Print the directory from which we are deleting

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2017-01-20 19:16:43 +00:00
Open MPI Team
e642d1d91c nightly tarball: put the SSH target in a variable 
Just to make the scripts a little less error-prone.  Also split up the
ssh/scp lines just for readability.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2017-01-20 19:16:43 +00:00
Jeff Squyres
328b654626 snapshot: fix hash comparison 
- Don't use "-i" CLI option to perl; it's unnecessary here and causes
  a warning
- Branch names may not be entirely letters (e.g., "v1.11"), so take
  any character in the regexp to match the branch name

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2017-01-20 13:26:42 -05:00
Ralph Castain
cfce565ce9 Merge pull request #2763 from naughtont3/tjn-ortedvm-daemonize 
dvm: add daemonize and set-sid options
 2017-01-20 08:08:21 -08:00
Thomas Naughton
39d335a277 dvm: add daemonize and set-sid options 
Signed-off-by: Thomas Naughton <naughtont@ornl.gov>
 2017-01-20 09:28:26 -05:00
Ralph Castain
33d97b22bc Merge pull request #2766 from rhc54/topic/zlib 
Compress the xcast message if bigger than a defined size to further improve launch performance at scale
 2017-01-19 23:14:04 -08:00
Ralph Castain
668421b6ec Compress the xcast message if bigger than a defined size to further improve launch performance at scale 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-01-19 22:08:02 -08:00
Ralph Castain
37ee823a0f Merge pull request #2765 from rhc54/topic/bypass 
Allow parallel processing of launch msg while relaying
 2017-01-19 20:23:28 -08:00
Ralph Castain
1f46e48b94 Have mpirun and orteds activate the oob/tcp progress thread by default, leaving a way to turn it off via MCA param. Provide a method by which the add_procs command can be processed in parallel with relaying the cmd message to the next daemons down the tree. 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-01-19 18:52:58 -08:00
Ralph Castain
bb132f6d03 Merge pull request #2764 from rhc54/topic/dvm 
If a tool sees the HNP it is attached to die (thereby losing connecti…
 2017-01-19 15:39:30 -08:00
Ralph Castain
ca50b31de1 Merge pull request #2762 from rhc54/topic/oobfast 
Speed-up the OOB/TCP communications by using writev instead of writing the header, and then separately write the body
 2017-01-19 15:39:06 -08:00
Ralph Castain
63caeba84d Merge pull request #2747 from rhc54/topic/topo 
Try a different approach for scalably dealing with hetero clusters
 2017-01-19 14:22:36 -08:00
Ralph Castain
19bb64cfb8 If a tool sees the HNP it is attached to die (thereby losing connection), then stop the event loop instead of going through the abort code path. This will allow the tool to cleanup before exiting 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-01-19 14:04:06 -08:00