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Ralph Castain
cde80bbf47 Merge pull request #3638 from anandhis/ofi-coll-conduit-fail-dbg 
Minor clean up to rml-ofi send message
 2017-06-01 20:51:22 -07:00
KAWASHIMA Takahiro
c8d38d31c6 Merge pull request #3618 from kawashima-fj/pr/java-doc-man 
java: Detect `javadoc` path and improve `mpijavac` man page
 2017-06-02 10:24:05 +09:00
anandhi
6ddb487744 Cleaned up the send_msg(), moved checking for send to self into the send_nb() 
and send_buffer_nb()
	modified:   orte/mca/rml/ofi/rml_ofi_send.c

Signed-off-by: Anandhi Jayakumar <anandhi.s.jayakumar@intel.com>
 2017-06-01 17:50:54 -07:00
George Bosilca
037a85a782
Fix the OSHMEM request padding. 
This patch fixes a missed case by 5b670a2 (PR #3634).

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
 2017-06-01 18:30:02 -04:00
Josh Hursey
1665d771a6 Merge pull request #3635 from wlepera/fix/ibm/155305 
MPI_Sendreceive_replace data error with > 2k msg
 2017-06-01 14:38:01 -05:00
Jeff Squyres
d520c24f3a predefined MPI object padding: set to fixed number of bytes (#3634) 
Convert the predefined MPI object padding to a fixed number of bytes
(vs. a multiple of sizeof(void*)) so that the padding is the same size
between 32 and 64 bit builds.  I.e., we won't have a situation where
we've run out of padding in 32 bit builds but still have more space
available in 64 bit builds.

Fixes #3610

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2017-06-01 15:28:23 -04:00
William LePera
a7c9c4aef3 MPI_Sendreceive_replace data error with > 2k msg (RTC 155305) 
Signed-off-by: William LePera <lepera@us.ibm.com>
 2017-06-01 13:08:58 -04:00
Gilles Gouaillardet
5e9be7667b Merge pull request #3600 from ggouaillardet/topic/osc_rdma_get_segment 
osc/rdma: fix osc_rdma_get_remote_segment() length parameter
 2017-06-01 13:09:14 +09:00
Ralph Castain
4c00e2ca2f Merge pull request #3620 from rhc54/topic/grr 
Fix uninitialized variable. Set exit codes for failed launch so we get pretty error messages
 2017-05-31 13:08:42 -07:00
Nathan Hjelm
e1a997c0cb Merge pull request #3593 from hjelmn/bug_3575 
osc/rdma: fix typo in ompi_osc_rdma_lock_acquire_exclusive
 2017-05-31 08:54:40 -06:00
Ralph Castain
9d6b929894 Fix uninitialized variable. Set exit codes for failed launch so we get pretty error messages 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-05-31 07:38:37 -07:00
KAWASHIMA Takahiro
76b1f80664 java: Use correct date/version in mpijava man page 
`mpijavac.1` should be generated at `make`-time...

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
 2017-05-31 17:24:49 +09:00
Ralph Castain
9c1df3f7f0 Merge pull request #3615 from rhc54/topic/sigh 
Roll in latest PMIx updates
 2017-05-30 23:13:15 -07:00
KAWASHIMA Takahiro
63f0945dcc java: Detect the path of javadoc in configure 
Without this change, the directory of `javadoc` command must be
included in the `PATH` environment variable at `make`-time.
Paths of `javac`, `javah`, and `jar` commands are detected in
`configure`. So the path of `javadoc` also should be detected.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
 2017-05-31 14:26:14 +09:00
Ralph Castain
26d96061aa Roll in latest PMIx updates 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-05-30 21:35:35 -07:00
Ralph Castain
6ff2780426 Merge pull request #3614 from rhc54/topic/sync 
Don't sweat the "sync" settings on file descriptors as those flags aren't apparently fully portable
 2017-05-30 21:34:29 -07:00
Ralph Castain
26e7515a5e Don't sweat the "sync" settings on file descriptors as those flags aren't apparently fully portable 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-05-30 20:37:26 -07:00
Howard Pritchard
de92d1b9ce Merge pull request #3506 from hppritcha/topic/fix_issue_1089 
configury: add option to disable enable-new-dtags
 2017-05-30 19:56:14 -06:00
Ralph Castain
1fe452d371 Merge pull request #3607 from rhc54/topic/server 
Ensure that data from a job that was stored in ompi-server is purged once that job completes. Cleanup a few typos. Silence a Coverity warning
 2017-05-30 17:20:37 -07:00
Ralph Castain
5d990b557c Reorg ordering so that bare executable names also are found 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-05-30 15:58:55 -07:00
Ralph Castain
321abfc8c6 Fix cwd and preload-binary options 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-05-30 14:07:22 -07:00
Ralph Castain
ad108ba44d Fix the DVM 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-05-30 11:42:42 -07:00
Ralph Castain
9a8811a246 Ensure that data from a job that was stored in ompi-server is purged once that job completes. Cleanup a few typos. Silence a Coverity warning 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-05-30 09:43:01 -07:00
Ralph Castain
22631832ce Merge pull request #3604 from rhc54/topic/test 
Add minor test to ORTE test suite
 2017-05-29 16:03:13 -07:00
Ralph Castain
e8759ca66b Add minor test to ORTE test suite 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-05-29 15:43:52 -07:00
Ralph Castain
a8b34d975a Merge pull request #3603 from rhc54/topic/fds 
Add some debug code for detecting leaking file descriptors.
 2017-05-29 12:20:57 -07:00
Ralph Castain
f3ab326b4a Add some debug code for detecting leaking file descriptors. At the end of each job (and if MCA param is set), have each daemon compute the number of open fds and their characteristics and print a summary 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-05-29 11:25:20 -07:00
Ralph Castain
8e583dcf76 Merge pull request #3601 from rhc54/topic/fix 
Protect against the condition where the port string is actually NULL
 2017-05-28 21:36:21 -07:00
Ralph Castain
ed4078e2dd Protect against the condition where the port string is actually NULL 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-05-28 20:51:09 -07:00
Ralph Castain
89bbb5f585 Merge pull request #3597 from rhc54/topic/pmix2.0 
Update to PMIx v2.0.0rc1
 2017-05-28 20:27:11 -07:00
Gilles Gouaillardet
e622ca8c1c osc/rdma: fix osc_rdma_get_remote_segment() length parameter 
a buffer defined by (buf, count, dt)
will have data starting at buf+offset and ending len bytes later with
len = opal_datatype_span(&dt.super, count, &offset);

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-05-29 11:08:03 +09:00
Ralph Castain
9f1f9d6606 Update to PMIx v2.0.0rc1 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-05-28 10:30:58 -07:00
Ralph Castain
36457cbce6 Merge pull request #3596 from rhc54/topic/cov 
Silence coverity warnings
 2017-05-27 12:57:13 -07:00
Ralph Castain
87201a80ff Silence coverity warnings 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-05-27 11:45:53 -07:00
Ralph Castain
c99978a767 Merge pull request #3595 from rhc54/topic/dyn 
Update the connect/accept support
 2017-05-27 11:32:08 -07:00
Ralph Castain
9f60cd0fe7 Update the connect/accept support so we check to see if we have the proper infrastructure and RTE support, including whether we have ompi-server available if the connect/accept spans multiple applications. Print pretty help messages in all cases where we do not have support 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-05-27 10:47:08 -07:00
Nathan Hjelm
b83c5dbee5 osc/rdma: fix typo in ompi_osc_rdma_lock_acquire_exclusive 
Fixes #3575

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2017-05-26 14:21:08 -06:00
Ralph Castain
a6f61132d7 Merge pull request #3588 from rhc54/topic/server 
Fix ompi-server operations
 2017-05-26 11:19:59 -07:00
Nathan Hjelm
c7e6294f31 Merge pull request #3589 from hjelmn/cxx_glue 
mpi/cxx: remove nonexistent function from cxx glue
 2017-05-26 11:24:05 -06:00
Nathan Hjelm
33d59886e1 Merge pull request #3587 from hjelmn/event_abstraction 
pmix/pmix2x: fix errors in event abstration
 2017-05-26 10:44:18 -06:00
Nathan Hjelm
ee9093c373 mpi/cxx: remove nonexistent function from cxx glue 
This commit removes a nonexistent function that was causing build
problems under certain environments.

Reference #3442

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2017-05-26 10:40:19 -06:00
Ralph Castain
8c2a06477c Fix ompi-server operations 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-05-26 08:57:55 -07:00
Nathan Hjelm
a512b8962d pmix/pmix2x: fix errors in event abstration 
Parts of the pmix2x component called the event_* functions directly
instead of the opal_event_* wrappers. This is fine as long as we are
using libevent but becomes a problem with other event libraries.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2017-05-26 09:49:11 -06:00
Josh Hursey
4bfb0fcddd Merge pull request #3577 from markalle/pr/osc_rdma_rangecheck 
fix for buffer length check (rdma osc w/ odd datatypes)
 2017-05-26 10:44:33 -05:00
Nathan Hjelm
7d5cc8ebca Merge pull request #3572 from ggouaillardet/topic/ompi_osc_rdma_rget_accumulate_internal 
osc/rdma: fix datatype extent usage in ompi_osc_rdma_rget_accumulate_…
 2017-05-26 09:37:51 -06:00
Ralph Castain
2f721a3366 Merge pull request #3585 from rhc54/topic/pmix20 
Update to pmix v2.0beta
 2017-05-26 06:05:44 -07:00
Gilles Gouaillardet
47ebfaa60d Merge pull request #3451 from mkurnosov/reduce-allreduce-rebenseifner 
coll: Add Rabenseifner's algorithm for Reduce and Allreduce
 2017-05-26 21:00:30 +09:00
Ralph Castain
e1e264711a Update to pmix v2.0beta 
Fix atomics - again
Fix initialization of notification ring buffer
Fix wait_sync definitions

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-05-26 03:33:18 -07:00
Mikhail Kurnosov
f6e2d4ab04 coll: Add Rabenseifner's algorithm for Reduce and Allreduce 
A component with implementation of R. Rabenseifner's algorithm for Reduce and Allreduce.
This algorithm is a combination of a reduce-scatter implemented with recursive vector halving
and recursive distance doubling, followed either by a gather or an allgather.

Current limitations:
  -- count >= 2^{\floor{\log_2 p}}
  -- commutative operations only
  -- intra-communicators onl

Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>

coll/spacc: Modify implementation to use `ompi_coll_base_sendrecv()`

Replace irecv() + isend() + ompi_request_wait() to ompi_coll_base_sendrecv().

Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
 2017-05-26 14:33:35 +07:00
Gilles Gouaillardet
0f79259b94 osc/rdma: use extent of the appropriate datatype in ompi_osc_rdma_rget_accumulate_internal() 
origin_datatype and target_datatype might be different and hence have different extent,
so use either origin_extent or target_extent when appropriate.

Refs open-mpi/ompi#3569

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-05-26 13:59:38 +09:00