top_ompi_srcdir -> OMPI_TOP_SRCDIR
top_ompi_builddir -> OMPI_TOP_BUILDDIR
We also split the srcdir/builddir flags according to their local tree (e.g., OPAL_TOP_SRCDIR), and tied them all together in configure.ac. Renamed ompi_ignore and ompi_unignore to be opal_<foo> as these are agnostic markers.
Only thing left is ompilibdir being treated similar to what we dif for srcdir/builddir. Coming soon.
This commit was SVN r31678.
In abusive MPI communication patterns, sending a UDP ping only once a
second may not be sufficient -- all the UDP pings may be dropped. So
increase the frequency of the pings to every quarter second, and allow
more total pings to be sent.
Total timeout time is still the same (10 seconds) -- we'll just now
try 40 times (i.e., once every quarter second) as opposed to 10 times
(i.e., once a second). Testing has shown that this frequency allows
the connectivity checker to always succeed even in the many-to-one
abusive communication patterns.
cmr=v1.8.2:reviewer=dgoodell
This commit was SVN r31602.
We're passing a char foo[x] into PACK_BYTES, so we don't need to take
its address in the macro. This is parallel to the UNPACK_BYTES macro
(where we pass a char bar[x] into it, and don't take its address in
the macro).
The value we're packing is only used to output in a show_help message,
which is why this wasn't noticed before (i.e., it's not used in
network or addressing that would have caused a failure).
cmr=v1.8.2:reviewer=dgoodell
This commit was SVN r31594.
Per #4590, we now ''require'' the PROCEDURE keyword support in Fortran
for the mpi_f08 module. So if the Fortran compiler doesn't support
it, then we won't build the mpi_f08 module.
Fixes trac:4590
This commit was SVN r31588.
The following Trac tickets were found above:
Ticket 4590 --> https://svn.open-mpi.org/trac/ompi/ticket/4590
Use the new opal dstore API (vs. the old RTE DB API).
(dstore is not going to the v1.8 series, so there's no need to CMR
this to v1.8)
This commit was SVN r31580.
Not closing this file descriptor will cause us to leak file
descriptors. It is safe to close the file after it has been mmapped.
cmr=v1.8.2:reviewer=manjugv
This commit was SVN r31579.
There's a requirement in several places (e.g., opal dstore) that
sizeof(ompi_process_name_t) -- which comes from the compile-time
selected ompi/mca/rte component -- is equal to sizeof(uint64_t). If
it's not, Bad Things will happen.
So put an assert here to catch that case.
This commit was SVN r31577.
Several fixes:
- I was allowing an MPI_T_cvar_handle to be created for an invalid
variable. Fixed this by checking if the variable is valid in
mca_base_var_get.
- Use a better error code when the caller tries to create an unbound
pvar handle for a bound variable.
- Return the verbosity level in MPI_T_cvar_get_info.
cmr=v1.8.2:reviewer=jsquyres
This commit was SVN r31576.
The old default context id maximum was committed to the trunk in
2006. After some discussion with Intel it appears this is restricting
the mtl to an arbirarly small number of communicators. Increasing the
default to allow up to 2^16 - 1 context ids.
Refs trac:4574
cmr=v1.8.2
This commit was SVN r31574.
The following Trac tickets were found above:
Ticket 4574 --> https://svn.open-mpi.org/trac/ompi/ticket/4574
http://www.open-mpi.org/community/lists/devel/2014/04/14496.php
Revamp the opal database framework, including renaming it to "dstore" to reflect that it isn't a "database". Move the "db" framework to ORTE for now, soon to move to ORCM
This commit was SVN r31557.
If the loops never get executed because CIDs are exhausted, then the
value of flag will be undefined.
Refs trac:4572
This commit was SVN r31546.
The following Trac tickets were found above:
Ticket 4572 --> https://svn.open-mpi.org/trac/ompi/ticket/4572
This commit fixes a bug that can cause request and communicator leaks
when cleaning up an OSC window. The should prevent a hang seen with
IMB-EXT.
cmr=v1.8.2:reviewer=jsquyres
This commit was SVN r31539.
Due to a leak in the osc/rdma component we were running out of cids on
a one-sided tests. This resulted in a hang instead of an error. This
commit causes the nextcid algorithm to return an error if we run out
of cids.
cmr=v1.8.2:reviewer=jsquyres
This commit was SVN r31538.
We will track #4568 from the 1.8 CMR.
Closes trac:4568
cmr=v1.8.2:reviewer=jsquyres
This commit was SVN r31535.
The following Trac tickets were found above:
Ticket 4568 --> https://svn.open-mpi.org/trac/ompi/ticket/4568
This commit will improve the message rate when using the sendi function
by not waiting for the send to get to the remote process.
cmr=v1.8.2:reviewer=ompi-rm1.8
This commit was SVN r31526.
This combination does not make sense but is not explicitly forbidden by
the standard so remove the argument check for this combination.
cmr=v1.8.2:reviewer=jsquyres
This commit was SVN r31523.
feature
This commit should fix a hang seen when running some of the one-sided
tests. The downside of this fix is it reduces the maximum size of the
messages that use the fast boxes. I will fix this in a later commit.
To improve performance under a heavy load I introduced sequencing to
ensure messages are given to the pml in order. I have seen little-no
impact on the message rate or latency with this change and there is a
clear improvement to the heavy message rate case.
Lets let this sit in the trunk for a couple of days to ensure that
everything is working correctly.
cmr=v1.8.2:reviewer=jsquyres
This commit was SVN r31522.
Patch from Gilles Gouaillardet on #4517 to fix handling 0-sized
messages in coll tuned with MPI_ALLTOALLV and MPI_IN_PLACE.
Reviewed by Jeff Squyres.
Fixes trac:4517
cmr=v1.8.2:reviewer=ompi-rm1.8
This commit was SVN r31521.
The following Trac tickets were found above:
Ticket 4517 --> https://svn.open-mpi.org/trac/ompi/ticket/4517
Patch from Gilles Gouaillardet on #4506 to correctly handle 0-sized
messages in coll/basic MPI_Alltoallv and MPI_Alltoallw.
Reviewed by Jeff Squyres.
Fixes trac:4506.
cmr=v1.8.2:reviewer=ompi-rm1.8
This commit was SVN r31519.
The following Trac tickets were found above:
Ticket 4506 --> https://svn.open-mpi.org/trac/ompi/ticket/4506
Patch submitted by Gilles Gouaillardet on #4518. Reviewed by Jeff.
Fixes trac:4518
cmr=v1.8.2:reviewer=ompi-rm1.8
This commit was SVN r31517.
The following Trac tickets were found above:
Ticket 4518 --> https://svn.open-mpi.org/trac/ompi/ticket/4518
Ensure to also OBJ_RELEASE the neightbor and ineighbor modules.
Fixes trac:4444 (this patch is from that ticket).
This commit was SVN r31516.
The following Trac tickets were found above:
Ticket 4444 --> https://svn.open-mpi.org/trac/ompi/ticket/4444
One more commit for this ticket... as pointed out by Giles, we have
ompi_op_is_commute(). We should use that instead of replicating the
logic for the test.
Refs trac:4548
This commit was SVN r31497.
The following Trac tickets were found above:
Ticket 4548 --> https://svn.open-mpi.org/trac/ompi/ticket/4548
MPI_OP_COMMUTATIVE should work on all MPI_Op's -- regardless of
whether they are predefined or not.
Refs trac:4548.
This commit was SVN r31491.
The following Trac tickets were found above:
Ticket 4548 --> https://svn.open-mpi.org/trac/ompi/ticket/4548
* Superfluous use of MPI_User_function in comm_create_keyval_f08.F90
* Missed adding "value" keyword to function pointer arguments in pmpi
C interfaces
Submitted by Craig, reviewed by Jeff.
Refs trac:4512
This commit was SVN r31455.
The following Trac tickets were found above:
Ticket 4512 --> https://svn.open-mpi.org/trac/ompi/ticket/4512
Changed:
- Use ompi_mpi_group_null instead of MPI_GROUP_NULL.
- Asserts don't always quiet the clang static analyser. Change them to
ifs to really quite the warnings.
cmr=v1.8.1:ticket=trac:4527:reviewer=jsquyres
This commit was SVN r31424.
The following Trac tickets were found above:
Ticket 4527 --> https://svn.open-mpi.org/trac/ompi/ticket/4527
The algorithm was failing ibm/collective/allgather and iallgather. I
cleaned up the code to eliminate duplicate code paths and tracked the
issue down to an error in the way extra nodes in the knomial exchange
are handled. The new code is more compact and has been tested with up
to 64 ranks with the ibm test suite.
cmr=v1.8.1:reviewer=manjugv
This commit was SVN r31419.
The file coll_ml_ibarrier.c wasn't included in coll/ml's Makefile.am
and the setup code from coll_ml_hier_algorithms_ibarrier.c was not
being called. It looks like this code is stale and has long since been
replaced by the code in coll_ml_barrier.c
Once all these little CMRs are approved I may make it into one roll-up
CMR to make it easier on the RM.
cmr=v1.8.1:reviewer=manjugv
This commit was SVN r31418.
a segmentation fault in the reduce cleanup
Some of the changes address false warnings produced by scan-build. I
added asserts and changed some malloc calls to calloc to silence these
warnings.
The was one issue in cleanup for reduce since the component_functions
member is changed by the allreduce call. There may be other issues
with how this code works but releasing the allocated
component_functions after setting up the static functions addresses
the primary issue (SIGSEGV).
cmr=v1.8.1:reviewer=manjugv
This commit was SVN r31417.
communicator code.
Many of the warnings were false warnings. These were silenced by
adding the appropriate asserts. Other warnings identified some
potential issues in error paths that should now be resolved.
cmr=v1.8.1:reviewer=jsquyres
This commit was SVN r31416.
This commit addresses bugs discovered by ggouaillardet.
- Fix hang when creating an intercommunicator
- Fix memory leak
- Fix coverity warning cid70288
- Fix false coverity warning cid1196589
Fixes trac:4507
Fixes trac:4522
cmr=v1.8.1:reviewer=jsquyres
This commit was SVN r31415.
The following Trac tickets were found above:
Ticket 4507 --> https://svn.open-mpi.org/trac/ompi/ticket/4507
Ticket 4522 --> https://svn.open-mpi.org/trac/ompi/ticket/4522
This man page contains the prototype and descriptions for both
MPI_TYPE_INDEXED and MPI_TYPE_CREATE_HINDEXED. Bastian Beischer
noticed that the type of the array_of_displacements argument in the
MPI_TYPE_CREATE_HINDEXED was wrong.
Also, a minor update to MPI_Type_hindexed.3in: indicate that the C
type is MPI_Aint and the Fortran type is INTEGER (which is why this
function was deprecated and then deleted by the MPI Forum!).
cmr=v1.8.1:reviewer=dgoodell
This commit was SVN r31411.
Nothing is generated in this file; this commit essentially just
renames ompi_config.h.in -> ompi_config.h.
cmr=v1.8.1:reviewer=dgoodell
This commit was SVN r31395.
It's a singular filename because there's only 1 interface in the
file. Also, r31375 missed updating the name in a few places, and
broke the build for compilers that supported the mpi_f08 interface.
This commit was SVN r31389.
The following SVN revision numbers were found above:
r31375 --> open-mpi/ompi@fe1935de14
Two things to note:
- This change will allow us to expand the BTL interface without
having to worry about modifying BTLs that will not support the new
interfaces. More on this will come later this year as part of the
1.9 series.
- C99 guarantees that uninitialed members of structs declared outside
of functions (DATA binary section) will be initialized with
0's. This allows us to drop stuff like .btl_flags = 0, or .btl_get
= NULL.
This commit was SVN r31388.
When sending PUT_LONG, the data is sent before headers, and sometimes
the header is not flushed immediately. This creates a lot of unexpected
receives in the peer, since it would posts a receive only when gets the
header, which makes it run out of receive buffers. When the sender
eventually flushes the window, the receiver already has no buffers to
receive the header, which causes a deadlock.
The fix is to always flush the headers when doing put_long.
cmr=v1.8.1:reviewer=hjelmn
This commit was SVN r31378.
Since we only builds the "small" size of the "mpi" module any more, it
does not take a long time to compile. So remove the warning that is
emitted.
Also remove a vestage of Windows support that was leftover in the
Fortran area (i.e., building mpi.obj).
This commit was SVN r31374.
Differentiate the pre-defined attribute and conversion interfaces into
those with INTEGER handles and those with TYPE(MPI_*) handles.
Refs trac:4157
cmr=v1.8.1:ticket=trac:4512
This commit was SVN r31372.
The following Trac tickets were found above:
Ticket 4157 --> https://svn.open-mpi.org/trac/ompi/ticket/4157
Ticket 4512 --> https://svn.open-mpi.org/trac/ompi/ticket/4512
Use type(c_funptr) to "cast" the fortran function pointers to
arbitrary C pointers. In C, we then pick up the appropriate function
pointer type.
Tested with ifort 14.0.2 and gfortran 4.9 snapshot (which is what
identified that the previous method of passing function pointers was
not Fortran'08-compliant).
Refs trac:4157
This commit was SVN r31371.
The following Trac tickets were found above:
Ticket 4157 --> https://svn.open-mpi.org/trac/ompi/ticket/4157
Junchao Zhang pointed out to me that we had the wrong parameter name
and string length specification for the "version" parameter. This
matters because Fortran allows passing by parameter name
(vs. parameter ordering). Specifically, we had the interface as:
{{{
subroutine MPI_Get_library_version_f08(name,resultlen,ierror)
character(len=MPI_MAX_PROCESSOR_NAME), intent(out) :: name
...etc.
}}}
but it should be:
{{{
subroutine MPI_Get_library_version_f08(version,resultlen,ierror)
character(len=MPI_MAX_LIBRARY_VERSION_STRING), intent(out) :: version
...etc.
}}}
Thankfully, MPI_MAX_PROCESSOR_NAME and MPI_MAX_LIBRARY_VERSION_STRING
are both 255 in OMPI, so there's no ABI issue caused by changing the
length from MMPN --> MMLVS.
The ABI is also unaffected by the parameter name change: if you
compile/link an MPI application calling MPI_GET_LIBRARY_VERSION with
1.8, it'll still run-time link with this change.
However, if an MPI program compiled using parameter name passing with
the old/incorrect parameter name ("name"), it won't be able to compile
with the new/correct parameter name ("version"). But this will only
happen for an incorrect MPI application (because the MPI-3 mandated
parameter name is "version", not "name"), so they deserve what they
get.
cmr=v1.8.1:reviewer=dgoodell
This commit was SVN r31365.
While testing one-sided on LANL systems I found a couple more OSC
bugs that were not caught during the initial testing:
- In the passive target code we read the read lock count as a
char instead of the intended uint32_t. This causes lock to
lockup when using shared locks after 127 iterations.
- The post code used the wrong group when trying to increment post
counters. This causes a segmentation fault.
- Both the post and wait code used the wrong check in the inner
loop leading to an infinite loop.
cmr=v1.8.1:reviewer=jsquyres
This commit was SVN r31354.
There was a typo in the ompi_osc_gacc_long_start that was causing a
segmentation fault when executing long get accumulate operations.
cmr=v1.8.1:reviewer=jsquyres
This commit was SVN r31353.
some of the collective modules, the shared memory and the profiling
interface. I left out VT, dynamic fcoll and seq rmaps.
cmr=v1.8.1:reviewer=jsquyres:subject=silence Coverity reported warnings
This commit was SVN r31309.
This commit fixes two nasty races:
- One can occur if the connection request message and connection completion
message arrive out of order. This can happen normally when adaptive routing
is used and also in a timeout situation where a UD message is lost.
- One occurs when handling an ack at the same time as we are handling the
message timeout. In this case we can not free the message or the timeout
will be operating on invalid data. This fix is a band-aid until I can come
up with a better approach. Instead of freeing the message it is marked
as inactive and the event callback is triggered immediately (this has no
affect if the callback is already active). The callback then frees the
message if it is inactive.
cmr=v1.8.1:reviewer=pasha
This commit was SVN r31305.
