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Автор SHA1 Сообщение Дата
Jeff Squyres
0715802f52 verbs_usnic: do not build by default
This component is a workaround to a bug in libibverbs that prints a
dire warning that usNIC devices are not supported (of course not --
usNIC devices provide functionality through libfabric, not
libibverbs).  This component was written before a better workaround
was created: a "no op" libibverbs plugin for usNIC devices
(https://github.com/cisco/libusnic_verbs, and is also available in
binary form on cisco.com).

Hence, this component no longer builds by default.  It's still
available if a user specifically asks for it (e.g., if they do not
want to install the "no op" libibverbs plugin), but it's not the
default.  This component also has the side-effect of making
libopen-pal.so depend on libibverbs.so, which can be annoying for
packagers (which is another reason it isn't built by default any
more).
2016-02-02 11:22:04 -08:00
Nathan Hjelm
cd11fc3081 btl/ugni: fix race condition that causes completions to be dropped
The send code in the ugni btl has an optimization that enables it to
return 1 (fragment gone) in some cases. This optimization involved
removing the btl ownership and callback flags to ensure the fragment
stuck around long enough for its completion flag to be checked. This
works fine for the single-threaded case but not in the multi-threaded
case. It is possible that a fragment will be completed by another
thread while a thread is in mca_btl_ugni_send. This competition can
lead to a leaked fragment, missed callback, or both. To fix the issue
without removing the optimization a reference count has been added to
the fragment. Callbacks and fragment release will not be made until
the fragment reference count has reach 0. The count is incremented
before sending the frag and decremented after the completion flag has
been checked. The fix has been verified to work using a multi-threaded
RMA benchmark with the osc/pt2pt component.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-02-02 12:14:31 -07:00
Nathan Hjelm
14704201e2 btl/ugni: fix race condition when adding endpoint to wait list
This commit fixes a race condition that can cause an endpoint to be
added to the wait list multiple times. To fix the issue an additional
check has been added to ensure the endpoint is not on the wait list
after the wait list lock is held. The wait list processing code has
also been updated to keep the wait list lock until all wait listed
endpoints have been handled. This reduces the chance that an endpoint
that is being processed by the wait list code is not re-added to the
list by a competing send.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-02-02 12:13:49 -07:00
Gilles Gouaillardet
cda094afc7 mpi_f08: correctly implements MPI_{COMM,TYPE,WIN}_{DUP,NULL_{COPY,DELETE}}_FN
Fixes open-mpi/ompi#1323
2016-02-02 13:38:01 +09:00
Gilles Gouaillardet
728a97c558 use-mpi-f08: remove duplicates from Makefile.am 2016-02-02 13:33:07 +09:00
Jeff Squyres
910eca751f Merge pull request #1327 from ggouaillardet/poc/mpi_xxx_dup_yyy_no_bind
f08: do not BIND(C) to subroutines with LOGICAL parameters
2016-02-01 17:56:27 -05:00
Jeff Squyres
9f3ed00125 usnic: minor updates from code review
Three minor updates from the code review of
https://github.com/open-mpi/ompi-release/pull/933:

* Remove an extra blank line a show_help message
* We no longer allow -1 for the MCA param btl_usnic_av_eq_num, so
  change the flag to REGINT_GE_ONE
* Change "num_blocks" definition to be in terms of block_len (not
  eq_size)
2016-02-01 11:14:30 -08:00
Jeff Squyres
c2615a4732 usnic: change retrans timeout to 5ms
A bunch of empirical testing has shown that increasing the retranmit
timeout from 1ms to 5ms doesn't adversely affect performance, yet
decreases the number of gratuitious retransmissions.
2016-01-30 10:49:14 -08:00
Jeff Squyres
797d5026c8 usnic: better av_eq_num default value handling 2016-01-30 10:46:14 -08:00
Jeff Squyres
db825abc00 usnic: don't overrun the fi_av_insert() EQ
Add endpoints in a blocked manner so that we don't overrun the
fi_av_insert() event queue.  Also make the AV EQ length an MCA param,
and report it in mca_btl_base_verbose >=5 output.
2016-01-30 08:33:48 -08:00
Jeff Squyres
d624e0d60f usnic: fix wraparound sequence number issue
Sequence numbers will wrap around; it is not sufficient to check for
(seq-1) -- must use the SEQ_DIFF macro to properly handle the
wraparound.

This bug wasn't serious; it just meant we might retransmit one or two
extra times when retransmits were triggerd and the sequence numbers
wrapped around their sliding windows.
2016-01-30 08:32:13 -08:00
Jeff Squyres
4de4a263f5 usnic: ensure all messages are sent on the data channel
Messages should go on the data channel, even if they're short.  Only
ACKs go on the priority channel.
2016-01-30 08:31:21 -08:00
Gilles Gouaillardet
d529951206 hwloc: correctly count cores with at least one allowed PU
when SMT is enabled, a core must be counted as long as one of its hwthread is allowed

Thanks Ben Menadue for the report.

This fixes a regression from open-mpi/ompi@6d149554a7
2016-01-29 11:54:34 +09:00
Edgar Gabriel
3f7fff5780 Merge pull request #1331 from edgargabriel/solaris-statfs-fix
Solaris statfs fix
2016-01-28 20:16:33 -06:00
Gilles Gouaillardet
f5a53b5f1e pmix: fix Makefile.am to correctly exclude autogenerated file from tarball
(back-ported from pmix/master@73daf58ee5)
2016-01-28 11:42:03 +09:00
Gilles Gouaillardet
69ba2a9b6b ddt: fix support of MPI_COMBINER_RESIZED in __ompi_datatype_create_from_args
Thanks James Ramsey for the report
2016-01-28 11:32:29 +09:00
Nathan Hjelm
e564c69769 Merge pull request #1330 from hjelmn/osc_rdma_fix
osc/rdma: fix typo in ompi_osc_rdma_complete_atomic
2016-01-26 19:26:59 -07:00
Nathan Hjelm
a19c265ab5 osc/rdma: fix typo in ompi_osc_rdma_complete_atomic
The typo caused SEGVs on systems with only fetching atomic
support.

Fixes open-mpi/ompi#1329

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-01-26 15:44:07 -07:00
Edgar Gabriel
b4a725c26a need to check for the parent dir as well, since the file might not exist yet. 2016-01-26 13:49:21 -06:00
Edgar Gabriel
722aab92e6 - extend opal_path_nfs to retrieve the file system type
- use opal_path_nfs in the fs_base function to avoid code duplication.
2016-01-26 13:36:21 -06:00
Gilles Gouaillardet
6d149554a7 hwloc: have opal_hwloc_base_get_pu search for HWLOC_OBJ_PU when mpirun is invoked with --use-hwthread-cpus
Fixes open-mpi/ompi#1247
2016-01-26 18:10:33 +09:00
Gilles Gouaillardet
704f14f91e f08: do not BIND(C) to subroutines with LOGICAL parameters
Thanks Paul Romano for reporting this issue.
2016-01-26 13:56:24 +09:00
rhc54
53185e7621 Merge pull request #1326 from ggouaillardet/topic/pmix_check_icc_varargs
pmix configury: add missing PMIX_CHECK_ICC_VARARGS function
2016-01-25 19:38:12 -08:00
Gilles Gouaillardet
15e26da1e1 pmix configury: add missing PMIX_CHECK_ICC_VARARGS function
Thanks Paul Hargrove for the report

(back-ported from pmix/master@7b16e914bf)
2016-01-26 10:57:16 +09:00
Joshua Ladd
69e3c6f289 Merge pull request #1321 from jladd-mlnx/topic/add-allgatherv-reduce
Adding entry points for Allgatherv, iAllgatherv, Reduce, and iReduce.
2016-01-25 20:46:52 -05:00
Edgar Gabriel
86765d796a Merge pull request #1325 from edgargabriel/pvfs2-configure-logic-3
revampt the pvfs2 configure logic
2016-01-25 14:05:04 -06:00
Edgar Gabriel
9c93df5a47 revampt the pvfs2 configure logic 2016-01-25 12:03:01 -06:00
Nathan Hjelm
aec3060109 Merge pull request #1313 from igor-ivanov/pr/issue-1301
orte/oob: Fix issue #1301
2016-01-25 10:24:26 -07:00
Nathan Hjelm
500e90422d Merge pull request #1320 from hjelmn/osc_rdma_fix
osc/rdma: fix hang when performing large unaligned gets
2016-01-25 09:36:13 -07:00
Mike Dubman
ad3aa3879a Merge pull request #1322 from jladd-mlnx/topic/BufFix-for-coll-hcoll-coll_request
BufFix for coll/hcoll: coll_request must be set to ACTIVE when allocated
2016-01-25 08:36:26 +02:00
Nathan Hjelm
45da311473 osc/rdma: fix hang when performing large unaligned gets
This commit adds code to handle large unaligned gets. There are two
possible code paths for these transactions:

 1) The remote region and local region have the same alignment. In
 this case the get will be broken down into at most three get
 transactions: 1 transaction to get the unaligned start of the region
 (buffered), 1 transaction to get the aligned portion of the region,
 and 1 transaction to get the end of the region.

 2) The remote and local regions do not have the same alignment. This
 should be an uncommon case and is not optimized. In this case a
 buffer is allocated and registered locally to hold the aligned data
 from the remote region. There may be cases where this fails (low
 memory, can't register memory). Those conditions are unlikely and
 will be handled later.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-01-22 21:06:46 -07:00
Valentin Petrov
5e2a2c0755 BufFix for coll/hcoll: coll_request must be set to ACTIVE when alloced
If the state of the request is not set to OMPI_REQUEST_ACTIVE
       then MPI_Test would immediately signal such request completed
       while hcoll may still be working on it.

Signed-off-by: Joshua Ladd <jladd.mlnx@gmail.com>
2016-01-23 03:23:59 +02:00
Joshua Ladd
e398bf6f3a Adding entry points for Allgatherv, iAllgatherv, Reduce, and iReduce.
Signed-off-by: Joshua Ladd <jladd.mlnx@gmail.com>
2016-01-23 03:09:29 +02:00
Nathan Hjelm
70787d1574 Merge pull request #1319 from hjelmn/osc_rdma_fix
osc/rdma: use correct endpoint for local state
2016-01-22 11:53:06 -07:00
Mike Dubman
89c7fea492 Merge pull request #1315 from alex-mikheev/topic/oshmem_ucx_atomic
OSHMEM/UCX: implements atomic support
2016-01-22 20:46:44 +02:00
Nathan Hjelm
49d2f44b97 osc/rdma: use correct endpoint for local state
If atomics are not globally visible (cpu and nic atomics do not mix)
then a btl endpoint must be used to access local ranks. To avoid
issues that are caused by having the same region registered with
multiple handles osc/rdma was updated to always use the handle for
rank 0. There was a bug in the update that caused osc/rdma to continue
using the local endpoint for accessing the state even though the
pointer/handle are not valid for that endpoint. This commit fixes the
bug.

Fixes open-mpi/ompi#1241.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-01-22 10:41:27 -07:00
Nathan Hjelm
243d973cfe Merge pull request #1316 from hjelmn/datatype_pack_threads
ompi/datatype: make datatype pack thread safe
2016-01-21 20:14:10 -07:00
Nathan Hjelm
0fe4818454 Merge pull request #1318 from hjelmn/osc_rdma_fixes
osc/rdma: disable put aggregation when using threads
2016-01-21 17:54:52 -07:00
Nathan Hjelm
b921831f2b ompi/datatype: make datatype pack thread safe
This commit makes ompi_datatype_get_pack_description thread safe. The
call is used by osc/pt2pt to send the packed description to remote
peers. Before this commit if MPI_THREAD_MULTIPLE is enabled and the
user uses MPI_Put, MPI_Get, etc we could hit a race where multiple
threads attempt to store the packed description on the datatype. Since
the code in question is not performance-critical the threading fix
uses opal_atomic_* calls instead of bothering with OPAL_THREAD_*.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-01-21 17:53:28 -07:00
Nathan Hjelm
6180386bea osc/rdma: disable put aggregation when using threads
Optimizing put aggregation in the presence of threads will require a
redesign of the code. For now just ensure that put aggregation is
turned off when MPI_THREAD_MULTIPLE is enabled.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-01-21 15:50:35 -07:00
Ralph Castain
ae3df2968a Add the 1.10.2 NEWS items 2016-01-21 10:00:41 -08:00
Edgar Gabriel
b253d4e887 fix CID 1349739, CID 1349738, CID 1349736 and (probably) CID 1349740 (not entirely sure about the last one, since I don't understand why block[i] is a problem but max_len[i] allocated and treated exactly the same way 1 line later is not). 2016-01-21 08:32:23 -06:00
Alex Mikheev
f627608e42 OSHMEM/UCX: implements atomic support
ucx atomic component has a real code now.
fixes bug in spml ucx arr_procs
removes redundant parameter checks from atomic components.
2016-01-21 16:02:28 +02:00
Jeff Squyres
655b4be97c find_common_syms: update for OS X symbol naming
OS X tends to prefix its symbols with "_".
2016-01-20 16:18:43 -05:00
Edgar Gabriel
9b8d769e41 will rivist the addproc component later in spring, right now it is constantly in the way of doing my tests. 2016-01-20 15:05:51 -06:00
Edgar Gabriel
1671604dbc Merge pull request #1307 from edgargabriel/fcoll-dynamic_gen2
Fcoll dynamic gen2
2016-01-20 10:19:56 -06:00
Igor Ivanov
34d861dfe9 orte/oob: Fix issue #1301
Signed-off-by: Igor Ivanov <Igor.Ivanov@itseez.com>
2016-01-20 12:08:00 +02:00
Gilles Gouaillardet
2adbe273d6 mpi: have MPI_Wtick() return the period (and not the frequency) if OPAL_TIMER_CYCLE_NATIVE 2016-01-20 14:14:47 +09:00
Jeff Squyres
bd04192087 Merge pull request #1234 from ggouaillardet/poc/travis_gcc5
Poc/travis gcc5
2016-01-18 09:26:56 -05:00
Gilles Gouaillardet
c0f8f2ce32 ompi/dpm: correctly handle sentinels in construct peers
This fix is similar to open-mpi/ompi@4c1ea4a171
and open-mpi/ompi@213b2abde4
2016-01-18 09:57:38 +09:00