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Shiqing Fan
b82f062f24 - double declaration of extern "C" make MS compiler complain. Change them to *_C_DECLS. 
This commit was SVN r19432.
 2008-08-27 15:49:40 +00:00
Rainer Keller
e393048872 - The struct mca_base_component_t does not need to be defined as we 
#include "opal/mca/mca.h"
 - Should have ompi_config for the ifdef

This commit was SVN r19431.
 2008-08-27 15:19:26 +00:00
Matthias Jurenz
f2388ce95b Added 
"Makefile"
"Makefile.in"
"LICENSE"
to svn:ignore

This commit was SVN r19426.
 2008-08-27 08:48:12 +00:00
Matthias Jurenz
b59c72ba6f Added "OTF_inttypes_unix.h" to svn:ignore 
This commit was SVN r19425.
 2008-08-27 08:47:31 +00:00
Ralph Castain
2e4536d5aa Ensure that platform-specific mca param files get installed with the correct default mca param filename. Platform-specific mca param files overwrite any pre-existing default mca param file as they are considered to be the "gold" standard if a platform file was provided. 
This commit was SVN r19423.
 2008-08-27 02:40:02 +00:00
Jeff Squyres
fcdbc0da27 Add a news item about MPI::IN_PLACE. Refs trac:1465. 
This commit was SVN r19421.

The following Trac tickets were found above:
  Ticket 1465 --> https://svn.open-mpi.org/trac/ompi/ticket/1465
 2008-08-26 17:36:55 +00:00
Jeff Squyres
0d618b519f Fix MPI::IN_PLACE to be (void* const). Fixes trac:1465. 
This commit was SVN r19420.

The following Trac tickets were found above:
  Ticket 1465 --> https://svn.open-mpi.org/trac/ompi/ticket/1465
 2008-08-26 17:36:08 +00:00
Ralph Castain
a5efefe980 Ensure var is init before use 
This commit was SVN r19416.
 2008-08-26 13:38:11 +00:00
Matthias Jurenz
80473b1725 Added important changes and bugfixes respectively from VT-trunk (backport) 
This commit was SVN r19410.
 2008-08-26 11:41:23 +00:00
Ralph Castain
063837a413 Add oob and iof stress tests 
This commit was SVN r19404.
 2008-08-26 03:02:46 +00:00
Ralph Castain
28346b5bac Get -host to not use empty nodes called out specifically later in the -host list 
This commit was SVN r19403.
 2008-08-26 03:02:28 +00:00
Ralph Castain
6039e385cd Per request from Terry, make -host and -hostfile respect order when used as filters. In other words, if you specify -host host1,host3,host2, then we should use the hosts in that order. Previously, we used them in whatever order they were found in the allocation - all the -host did was tell us which nodes to use, not what order to use them in. 
Relative node syntax remains supported. Also, if you specify empty nodes, but have a specific empty node called out later, we will not include that node in the empties we add. I'll provide examples in the manpage.

This commit was SVN r19402.
 2008-08-26 02:56:10 +00:00
Shiqing Fan
94a2147e3d - make sure that the system has the header files. 
This commit was SVN r19400.
 2008-08-25 13:56:10 +00:00
Jeff Squyres
7bcd285e98 Don't save the old .hgignore file 
This commit was SVN r19399.
 2008-08-25 12:55:07 +00:00
Ralph Castain
f722f134f7 Check the return code from opal_paffinity before continuing to set maffinity as it can only be done if the map_to_socket_core function succeeds. 
This commit was SVN r19396.
 2008-08-23 03:13:29 +00:00
Ralph Castain
b45029fd0e Application processes should not open/close the IOF framework - there is nothing in that framework for application procs to do. 
Fix a bug in iof_base_close where we destruct a thread lock prior to unlocking it.

This commit was SVN r19392.
 2008-08-22 01:28:19 +00:00
Ralph Castain
4ef9d15d97 Revamp the opal mca paffinity interface. We ran into a problem when we encountered machines that had "holes" in their physical processor layout - e.g., machines that supported "hotplugging", or that had unpopulated sockets. To solve that problem, we had to clarify at the API level where we were describing physical vs logical processor info, and then translate accordingly in the underlying implementation. 
See opal/mca/paffinity/paffinity.h for explanation as to the physical vs logical nature of the params used in the API.

Fixes trac:1435

This commit was SVN r19391.

The following Trac tickets were found above:
  Ticket 1435 --> https://svn.open-mpi.org/trac/ompi/ticket/1435
 2008-08-21 19:21:28 +00:00
Matthias Jurenz
7b61e02841 Fixed Coverity warnings 
CIDs: 815,867,879,880,881,909,910,918,919,936

This commit was SVN r19386.
 2008-08-21 15:01:32 +00:00
Matthias Jurenz
ea55900971 Corrected last checkin: potential buffer overflow 
This commit was SVN r19385.
 2008-08-21 15:00:44 +00:00
Matthias Jurenz
1bac115f7c Added check for empty environment variables 
This commit was SVN r19384.
 2008-08-21 15:00:14 +00:00
Matthias Jurenz
67f1e35eb0 Fixed Coverity warnings 
CIDs: 737,739,740,741,742,743,744,756,907,1110,1111

This commit was SVN r19376.
 2008-08-20 15:50:15 +00:00
Ralph Castain
04fe1e1875 Avoid using the "access" function for security reasons as per its documentation. Also, check to ensure it is a file (and not something else) when we are looking for a file 
Fixes trac:1272

This commit was SVN r19373.

The following Trac tickets were found above:
  Ticket 1272 --> https://svn.open-mpi.org/trac/ompi/ticket/1272
 2008-08-20 15:30:25 +00:00
Ralph Castain
43f8bcfe54 Update slurm plm to respect leave_session_attached 
This commit was SVN r19370.
 2008-08-19 18:30:30 +00:00
Ralph Castain
4e0f34a062 When we hit an error prior to actually launching daemons, it would be nice if orterun didn't bark about daemons failing to launch, mpirun detecting a job failed, etc. 
Add a new job state to indicate that we never attempted to launch. Flag such a scenario and avoid hitting all the other error messages.

This commit was SVN r19366.
 2008-08-19 15:19:30 +00:00
Ralph Castain
9447334749 Some comments relating to relative indexing 
This commit was SVN r19365.
 2008-08-19 15:17:40 +00:00
Ralph Castain
6d82efba21 Add relative indexing capabilities for hostfile and -host - we can now reference hosts using a relative syntax. 
See the orte_hosts manpage for an explanation

This commit was SVN r19364.
 2008-08-19 15:16:27 +00:00
Edgar Gabriel
ef2bb46e45 no need to create and free the groups. We just want to translate the ranks and we can use the internal group structures right away for that operation. Fixes an issue with groups that have not been freed previously, due to the fact that ompi_group_free was not visible here (I know, this could have been solved also by setting OMPI_DECLSPEC on ompi_group_free, but this solution should be faster.) 
This commit was SVN r19362.
 2008-08-19 13:59:58 +00:00
Edgar Gabriel
149ecb8d7d 1. debug the four new algorithms 
2. fix a bug in the initial communicator creation of llcomm
3. fix a bug which showed up as the result of fixing issue number 2: we have
   to check now whether llcomm has really be created before freeing the 
   according llcomm in hierarch_destruct.

This commit was SVN r19361.
 2008-08-18 21:54:35 +00:00
Edgar Gabriel
7cbc4a4077 adding four different algorithms for a hierarchical bcast which try to 
generate an overlap between the different layers. Why four versions? Because
there is right now always the trade-off between using non-blocking operations
on a layer with a trivial, linear algorithm and using the more sophisticaed
algorithms in a blocking manner. 

- bcast_intra_seg used the bcast of lcomm and llcomm, similarly
  to original algorithm in hierarch. However, it can segment
  the message, such that we might get an overlap between the two
  layers. This overlap is based on the assumption, that a process
  might be done early with a bcast and can start the next one.
- bcast_intra_seg1: replaces the llcomm->bcast by isend/irecvs
  to increase the overlap, keeps the lcomm->bcast however
- bcast_intra_seg2: replaced lcomm->bcast by isend/irecvs
  to increase the overlap, keeps however llcomm->bcast
- bcast_intra_seg3: replaced both lcomm->bcast and llcomm->bcast
  by isend/irecvs

The code is lightly tested, more testing to follow right now.

This commit was SVN r19358.
 2008-08-18 16:05:44 +00:00
Matthias Jurenz
19514f4df6 Fixed Coverity warnings 
CIDs: 865,866,896,897,974,975,976

This commit was SVN r19356.
 2008-08-18 14:24:41 +00:00
Matthias Jurenz
0f9693d8af Fixed Coverity warnings 
CIDs: 714,781,782,825,872,917

This commit was SVN r19354.
 2008-08-18 14:24:06 +00:00
Matthias Jurenz
c65e8a6882 Fixed Coverity warnings 
CIDs: 794,882,908,934,962

This commit was SVN r19352.
 2008-08-18 14:23:25 +00:00
Matthias Jurenz
63d84e2626 Fixed Coverity warnings 
CIDs: 977

This commit was SVN r19350.
 2008-08-18 14:22:48 +00:00
Matthias Jurenz
aa05fba21f Fixed Coverity warnings 
CIDs: 823,824,905,906

This commit was SVN r19348.
 2008-08-18 14:22:15 +00:00
Matthias Jurenz
406a61f599 Fixed Coverity warnings 
CIDs: 821,822,903,904

This commit was SVN r19346.
 2008-08-18 14:21:37 +00:00
Matthias Jurenz
7364bc9691 Fixed Coverity warnings 
CIDs: 957,1109

This commit was SVN r19344.
 2008-08-18 14:20:50 +00:00
Matthias Jurenz
33434d49fb Fixed Coverity warnings 
CIDs: 1105

This commit was SVN r19342.
 2008-08-18 14:19:30 +00:00
Matthias Jurenz
daa8119dd0 Corrected provious checkin (Coverity warning CID: 875) 
This commit was SVN r19340.
 2008-08-18 14:18:48 +00:00
Matthias Jurenz
9fc72120b7 Fixed Coverity warnings 
CIDs: 1104

This commit was SVN r19338.
 2008-08-18 14:17:39 +00:00
Matthias Jurenz
a4491e1b4c Fixed Coverity warnings 
CIDs: 918,919

This commit was SVN r19336.
 2008-08-18 14:16:23 +00:00
Matthias Jurenz
1555a8843f Renamed 'args' to 'argv' to avoid Coverity warnings (TAINTED_STRING) 
CIDs: 1106,1107,1108

This commit was SVN r19334.
 2008-08-18 14:15:39 +00:00
Matthias Jurenz
5081fd0da6 Fixed Coverity warnings 
CIDs: 727

This commit was SVN r19332.
 2008-08-18 14:13:45 +00:00
George Bosilca
6982e8ecbc Don't forget to release the temporary arrays used for converting 
the datatypes from Fortran to C.

This commit was SVN r19314.
 2008-08-17 21:57:59 +00:00
George Bosilca
2499112d1c Fix indentation. 
This commit was SVN r19313.
 2008-08-17 20:10:54 +00:00
George Bosilca
a6e3a47102 Fix typo. 
This commit was SVN r19312.
 2008-08-17 20:08:38 +00:00
George Bosilca
a41dcbbc44 Play nicely with the PML. If the data is in the pending send queue, then 
tell the PML we're still in charge of sending it.

This commit was SVN r19311.
 2008-08-17 20:07:53 +00:00
George Bosilca
f3568a271a Replace tabs with spaces. 
This commit was SVN r19310.
 2008-08-17 20:06:48 +00:00
George Bosilca
10612bef8a Bring back the SM pending queue, to avoid deadlocks. 
This commit fixes trac:1378.

This commit was SVN r19309.

The following Trac tickets were found above:
  Ticket 1378 --> https://svn.open-mpi.org/trac/ompi/ticket/1378
 2008-08-17 19:00:50 +00:00
Ethan Mallove
cb927614c7 Fixes trac:1448 (''Need configure workaround for Sun Studio compiles on Sparc Solaris'') 
This commit was SVN r19307.

The following Trac tickets were found above:
  Ticket 1448 --> https://svn.open-mpi.org/trac/ompi/ticket/1448
 2008-08-16 00:47:33 +00:00
Matthias Jurenz
c7ac98dd62 Fixed several Coverity-Warnings 
This commit was SVN r19304.
 2008-08-15 15:15:21 +00:00