Nathan Hjelm
5ab1674138
fixed de bruijn copyrights
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This commit was SVN r25720.
2012-01-12 17:18:08 +00:00
Nathan Hjelm
c57f18999d
added Debruijn routed component
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This commit was SVN r25717.
2012-01-12 17:11:03 +00:00
Ralph Castain
477582abef
Grrrr....fix ALL the cases where the membind warning occurs.
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This commit was SVN r25715.
2012-01-11 23:51:18 +00:00
Ralph Castain
bf103de66c
My apologies for doing this outside of the usual time restrictions, but we need to get this in so we can make progress.
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Move the ORTE-level debugger code back into orterun and out of the ORTE library to resolve symbol conflicts.
This commit was SVN r25713.
2012-01-11 15:53:09 +00:00
Ralph Castain
167ad944c4
Surprise, surprise - hwloc treats memory binding as at the thread, not process, level. Thus, hwloc always sets the membind proc-level support flag to false, and indicates actual memory binding support via the thread-level flag. So...just to be safe, test -both- flags and issue the "no support" warning ONLY if both are false.
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This commit was SVN r25709.
2012-01-11 01:12:57 +00:00
Shiqing Fan
e3dfc49ced
make correct use of the newly updated structures in the Windows module.
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This commit was SVN r25699.
2012-01-09 11:08:34 +00:00
Ralph Castain
840841bb8f
Missed a couple
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This commit was SVN r25686.
2011-12-29 23:30:19 +00:00
Ralph Castain
af7fb68cfb
If we forward envars in rsh, then we have to be very careful about both duplicate entries and disallowed characters on the cmd line. To aid with detecting duplicates, make all cmd line options be given in their mca variant. Check anything we might add for semi-colons and protect those values with quotes.
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This commit was SVN r25685.
2011-12-29 23:25:25 +00:00
Jeff Squyres
a4c8bb27fa
Pull in the MPIR_Breakpoint symbol via a dummy function in
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debuggers_base_fns.c: orte_debugger_base_pull_mpir_breakpoint().
This commit was SVN r25660.
2011-12-15 18:39:34 +00:00
Ralph Castain
2dd2694f25
Fix comm_spawn in oversubscribed conditions. IF oversubscription is allowed, let nodes flow into the mapper even if they are oversubscribed, constrained by the slots_max absolute ceiling. Cleanup error messages when comm_spawn fails so it correctly and succintly reports the ereror.
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This commit was SVN r25659.
2011-12-15 18:04:48 +00:00
Ralph Castain
1adefcc176
When routing is not enabled, all routes must go direct
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This commit was SVN r25656.
2011-12-15 15:32:09 +00:00
Ralph Castain
e683b2f9c7
Minor touchup - reset the pointer to the end of the list each time to ensure we get the nodes in correct daemon order
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This commit was SVN r25651.
2011-12-14 22:16:52 +00:00
Ralph Castain
912abe8a6c
Catch one more use-case
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This commit was SVN r25649.
2011-12-14 21:03:19 +00:00
Ralph Castain
f531b09a8d
Correctly handle -host and -hostfile options. Ensure the initial vm launch constrains itself to the union of specified hosts if those options are given. Get oversubscribe set correctly for that case.
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This commit was SVN r25648.
2011-12-14 20:01:15 +00:00
George Bosilca
ac26f58bd7
I guess this wasn't yet ready for prime time.
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This commit was SVN r25624.
2011-12-12 23:55:11 +00:00
Nathan Hjelm
885d5cbcf8
enable ptmalloc with using uGNI
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This commit was SVN r25621.
2011-12-12 20:52:51 +00:00
Nathan Hjelm
be11acf727
bug fix. don't add node to allocated_nodes twice
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This commit was SVN r25619.
2011-12-12 19:14:41 +00:00
Ralph Castain
3f1ae5d89b
No longer need this include
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This commit was SVN r25606.
2011-12-09 00:40:07 +00:00
Ralph Castain
44094cd5b3
Remove compiler warning
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This commit was SVN r25601.
2011-12-08 16:35:41 +00:00
Samuel Gutierrez
0a922dcb3e
fixes XE6 build.
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This commit was SVN r25600.
2011-12-08 16:13:58 +00:00
Samuel Gutierrez
0588e9ba36
add Cray XK6 support to ras alps. the configuration file is a different format and is in a different place.
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This commit was SVN r25599.
2011-12-08 14:05:02 +00:00
Ralph Castain
7180ad40ad
Fix a copule of minor buglets
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This commit was SVN r25589.
2011-12-07 21:08:35 +00:00
Ralph Castain
3e7ab1212a
Since this has come up a number of times, have the rsh launcher add MCA params from the environment by default. If it finds that the cmd line is too long, error out with a message directing the user to set a param to ignore the environmental MCA params.
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This commit was SVN r25581.
2011-12-07 01:24:36 +00:00
Ralph Castain
7510339725
Remove stale orte_vm_launch param. Add a param that allows users to specify envars to forward/set so they can do it in the MCA param file instead of only via mpirun cmd line.
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This commit was SVN r25580.
2011-12-06 21:31:22 +00:00
Ralph Castain
15facc4ba6
Fix comm_spawn yet again...add another test
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This commit was SVN r25579.
2011-12-06 20:15:40 +00:00
Ralph Castain
90b7f2a7bf
The rest of the multi app_context fix. Remove the restriction on number of app_contexts that can have zero np specified as multiple mappers now support that use-case. Update the ranking algorithms to respect and track bookmarks. Ensure we properly set the oversubscribed flag on a per-node basis.
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This commit was SVN r25578.
2011-12-06 17:28:29 +00:00
Ralph Castain
d9c7764e9b
Remove some debug
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This commit was SVN r25575.
2011-12-05 22:04:50 +00:00
Ralph Castain
df2f594aa8
Some cleanup associated with multiple app_contexts. Ensure nodes only get entered once into the map. Correctly handle bookmarks. Cleanup tracking of slots_inuse and correct detection of oversubscription.
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Still need to resolve the ranking issue so it starts at the bookmark, but that will come next.
This commit was SVN r25574.
2011-12-05 22:01:08 +00:00
Abhishek Kulkarni
0b7c51fae2
Correct an invalid reference to a missing help file.
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This commit was SVN r25573.
2011-12-05 21:29:07 +00:00
Josh Hursey
b5ac320826
* If not able to checkpoint at this time (say because we are already checkpointing or restarting) then make sure to re-set the listener so that we can checkpoint later.
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* Work around duplicate node names in the map. It should not happen normally, but if the rmaps component gets this wrong provide a work around. Ralph is working on a rmaps fix for this, so we will likely remove/comment out the fix later.
This commit was SVN r25572.
2011-12-05 19:29:26 +00:00
Josh Hursey
cc57840b53
Fix ess/tool so that it does not segv when using the rsh PLM. Just have it use the base function directly to avoid similar problems with finalizing other components.
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This commit was SVN r25571.
2011-12-05 15:40:46 +00:00
Ralph Castain
6cbd8fa6c9
Keep everyone in sync with new job state
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This commit was SVN r25563.
2011-12-02 14:12:40 +00:00
Ralph Castain
07655e2945
Handle the case where the allocator "fibs" to us about the node names. In some cases (ahem...you know who you are!), the allocator will tell us a node number (e.g., "16"). However, the daemon will return a node name (e.g., "nid0016") - leaving us not recognizing its location.
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So provide a new parameter (can't have too many!) that handles this situation by stripping the prefix from the returned node name. Also do a little cleanup to ensure we cleanly exit from errors, without generating too many annoying messages.
This commit was SVN r25562.
2011-12-02 14:10:08 +00:00
Jeff Squyres
ecf6ba910c
Silence a few icc warnings and about mixing enums with other types.
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This commit was SVN r25560.
2011-12-02 13:18:54 +00:00
Ralph Castain
641e17f26c
A better way of handling fqdn allocations. Prior method was wrong as it equated "node1" with "node10", which definitely caused problems.
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Detect the addition of fqdn nodes in the allocation. If not found, then strip all incoming hostnames from daemons of any domain info when matching those names against the names in the node pool.
Leave some protection and "live" diagnostic output in place so we can continue to detect problems across all environments.
This commit was SVN r25557.
2011-12-01 14:24:43 +00:00
Ralph Castain
512aea79bc
Print the right nodename value, fix the strange case
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This commit was SVN r25556.
2011-12-01 02:31:56 +00:00
Ralph Castain
44394c6b34
Add a little more protection
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This commit was SVN r25555.
2011-12-01 00:30:56 +00:00
Ralph Castain
c4ea7a252a
Add a little protection against badly formed node names so we don't segfault if they are encountered
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This commit was SVN r25554.
2011-11-30 23:33:59 +00:00
Ralph Castain
fa9e99454a
Don't divide by cpus-per-task - we'll deal with that at binding time.
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This commit was SVN r25552.
2011-11-30 21:35:25 +00:00
Ralph Castain
c56acf60ca
Although we never really thought about it, we made an unconscious assumption in the mapper system - we assumed that the daemons would be placed on nodes in the order that the nodes appear in the allocation. In other words, we assumed that the launch environment would map processes in node order.
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Turns out, this isn't necessarily true. The Cray, for example, launches processes in a toroidal pattern, thus causing the daemons to wind up somewhere other than what we thought. Other environments (e.g., slurm) are also capable of such behavior, depending upon the default mapping algorithm they are told to use.
Resolve this problem by making the daemon-to-node assignment in the affected environments when the daemon calls back and tells us what node it is on. Order the nodes in the mapping list so they are in daemon-vpid order as opposed to the order in which they show in the allocation. For environments that don't exhibit this mapping behavior (e.g., rsh), this won't have any impact.
Also, clean up the vm launch procedure a little bit so it more closely aligns with the state machine implementation that is coming, and remove some lingering "slave" code.
This commit was SVN r25551.
2011-11-30 19:58:24 +00:00
George Bosilca
7a238933b6
Silence a compiler warning.
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This commit was SVN r25543.
2011-11-29 20:53:08 +00:00
Terry Dontje
b1bb339d23
fix r25507 rationalization of rsh support by removing include of plm_base_rsh_support.h from tm module
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This commit was SVN r25519.
The following SVN revision numbers were found above:
r25507 --> open-mpi/ompi@b475421c16
2011-11-29 11:49:41 +00:00
Ralph Castain
0d55a3d739
Missed one spot...
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This commit was SVN r25517.
2011-11-28 22:30:53 +00:00
Ralph Castain
237c79b6d7
Fix daemon collectives - missed the one spot where returning orte_routed_tree_t was required. Sigh. Change the routed components to return that type on the list of children when get_routing_tree is called.
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This commit was SVN r25516.
2011-11-28 22:24:49 +00:00
Ralph Castain
89e5bd27a2
Fix copyright date
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This commit was SVN r25512.
2011-11-28 15:54:04 +00:00
Ralph Castain
70ab8422b1
Per the internal comments, the delay between ssh invocations is not there for debugging purposes, but rather to allow for NIS authetication times. We have seen that problem in the past, so don't just do the delay when we are debugging - use the delay for the intended purpose. Also, allow for shorter than second-level delays as it doesn't always have to be so long.
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This commit was SVN r25510.
2011-11-27 01:49:42 +00:00
Ralph Castain
b173316b74
Dont induce a delay between spawns unless specifically asked to do so
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This commit was SVN r25509.
2011-11-26 16:50:31 +00:00
Ralph Castain
b475421c16
As promised, rationalize the rsh support. Remove rshbase and the base rsh support, centralizing all rsh support into the rsh component. Remove the "slave" launch support as that experiment is complete. Fix tree spawn and make that the default method for rsh launch, turning it "off" for qrsh as that system does not support tree spawn.
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This commit was SVN r25507.
2011-11-26 02:33:05 +00:00
Ralph Castain
9b59d8de6f
This is actually a much smaller commit than it appears at first glance - it just touches a lot of files. The --without-rte-support configuration option has never really been implemented completely. The option caused various objects not to be defined and conditionally compiled some base functions, but did nothing to prevent build of the component libraries. Unfortunately, since many of those components use objects covered by the option, it caused builds to break if those components were allowed to build.
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Brian dealt with this in the past by creating platform files and using "no-build" to block the components. This was clunky, but acceptable when only one organization was using that option. However, that number has now expanded to at least two more locations.
Accordingly, make --without-rte-support actually work by adding appropriate configury to prevent components from building when they shouldn't. While doing so, remove two frameworks (db and rmcast) that are no longer used as ORCM comes to a close (besides, they belonged in ORCM now anyway). Do some minor cleanups along the way.
This commit was SVN r25497.
2011-11-22 21:24:35 +00:00
George Bosilca
1000af1c48
No need to abort there, returning an error trigger the
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abort at the upper level.
This commit was SVN r25494.
2011-11-18 19:07:26 +00:00
Ralph Castain
866edf6a89
Now that George has found his problem, we no longer need the bozo check. Interesting how these platform-specific issues surface...
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This commit was SVN r25493.
2011-11-18 17:43:14 +00:00
George Bosilca
b613c7eacb
Fix the issue with the round robin mapper. When mixing
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different precisions, one should manually promote the
participants to the expected type. In this particular
example as opal_list_get_size returns an unsigned long,
the computation on the left side is translated to an
unsigned. If the hostfile contains more nodes that what
required (via the -np), this leads to a gigantic value
for the balance, and breaks the round robin algorithm.
This commit was SVN r25492.
2011-11-18 17:03:35 +00:00
Ralph Castain
1e5e9bde77
Add protection against a bozo case where we could end up in an infinite loop while calculating ranks
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This commit was SVN r25491.
2011-11-18 15:35:55 +00:00
George Bosilca
61f273b987
Do not tolerate uninitialized variables.
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This commit was SVN r25489.
2011-11-18 10:19:24 +00:00
Ralph Castain
b34acd0476
Grrr....get the correct number too!
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This commit was SVN r25478.
2011-11-15 11:11:47 +00:00
Ralph Castain
593fc388a9
Make it a little more obvious as to which nodes are from each topology by labeling them with a letter.
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This commit was SVN r25477.
2011-11-15 11:10:39 +00:00
Ralph Castain
6310361532
At long last, the fabled revision to the affinity system has arrived. A more detailed explanation of how this all works will be presented here:
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https://svn.open-mpi.org/trac/ompi/wiki/ProcessPlacement
The wiki page is incomplete at the moment, but I hope to complete it over the next few days. I will provide updates on the devel list. As the wiki page states, the default and most commonly used options remain unchanged (except as noted below). New, esoteric and complex options have been added, but unless you are a true masochist, you are unlikely to use many of them beyond perhaps an initial curiosity-motivated experimentation.
In a nutshell, this commit revamps the map/rank/bind procedure to take into account topology info on the compute nodes. I have, for the most part, preserved the default behaviors, with three notable exceptions:
1. I have at long last bowed my head in submission to the system admin's of managed clusters. For years, they have complained about our default of allowing users to oversubscribe nodes - i.e., to run more processes on a node than allocated slots. Accordingly, I have modified the default behavior: if you are running off of hostfile/dash-host allocated nodes, then the default is to allow oversubscription. If you are running off of RM-allocated nodes, then the default is to NOT allow oversubscription. Flags to override these behaviors are provided, so this only affects the default behavior.
2. both cpus/rank and stride have been removed. The latter was demanded by those who didn't understand the purpose behind it - and I agreed as the users who requested it are no longer using it. The former was removed temporarily pending implementation.
3. vm launch is now the sole method for starting OMPI. It was just too darned hard to maintain multiple launch procedures - maybe someday, provided someone can demonstrate a reason to do so.
As Jeff stated, it is impossible to fully test a change of this size. I have tested it on Linux and Mac, covering all the default and simple options, singletons, and comm_spawn. That said, I'm sure others will find problems, so I'll be watching MTT results until this stabilizes.
This commit was SVN r25476.
2011-11-15 03:40:11 +00:00
Ralph Castain
c8e105bd8c
Remove stale code
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This commit was SVN r25475.
2011-11-14 23:39:23 +00:00
Ralph Castain
793f4c688f
Extend capability to support heterogeneous clusters with multiple topologies
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This commit was SVN r25474.
2011-11-13 23:23:09 +00:00
Ralph Castain
6b5e1b89cf
Turn off tree spawn as it doesn't currently work - will fix shortly. Add topology collection
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This commit was SVN r25472.
2011-11-11 23:42:36 +00:00
Ralph Castain
d008aeb531
Silence debug
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This commit was SVN r25471.
2011-11-11 16:42:45 +00:00
George Bosilca
3d318a4c26
Put the interface of our MPIR support in sync with the document accepted by the MPI
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Forum (http://www.mpi-forum.org/docs/mpir-specification-10-11-2010.pdf ).
This commit was SVN r25456.
2011-11-08 01:24:16 +00:00
George Bosilca
85a18dab74
MPIR_partial_attach_ok is not a volatile, but a constant.
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This commit was SVN r25455.
2011-11-08 01:00:38 +00:00
Ralph Castain
a3ce355a60
Revert r25453 and r25450 until we can fix the libevent2013 configure code - still not getting the includedir to eval correctly.
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This commit was SVN r25454.
The following SVN revision numbers were found above:
r25450 --> open-mpi/ompi@7f7d5c4f1f
r25453 --> open-mpi/ompi@c9fe8c32e2
2011-11-07 16:23:44 +00:00
Samuel Gutierrez
e03bc93fb7
only use pmi grpcomm and pubsub during the direct launch case. use PMI environment variable to setup vpid in ess alps on cray xe systems. add pmi test code.
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This commit was SVN r25447.
2011-11-06 17:28:40 +00:00
Ralph Castain
fcee46b063
Add an option for printing a diffable process map for testing mappers
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This commit was SVN r25428.
2011-11-03 14:22:07 +00:00
Samuel Gutierrez
3fe7b3ee54
add PMI support to ess alps module. xt system guys: please yell at me if i missed something in cnos.
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This commit was SVN r25423.
2011-11-03 04:04:32 +00:00
Samuel Gutierrez
27b9bcfafd
update ess alps configuration file to include CNOS and PMI checks. some of the features committed here aren't being used, but they will be. also update orte_check_pmi.m4 to include missing call to action-if-not-found if --with-pmi is not specified or is disabled.
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This commit was SVN r25422.
2011-11-03 02:14:47 +00:00
Jeff Squyres
7f6f7bd0eb
Remove this component; twitter long ago switched to the oauth
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authentication, and no one has ever updated this component to match.
It can be revived out of history if anyone cares.
This commit was SVN r25421.
2011-11-02 21:04:49 +00:00
Ralph Castain
b2e2d24726
As in the rsh module, report failed daemons to the errmgr for proper cleanup
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This commit was SVN r25419.
2011-11-02 18:30:22 +00:00
Ralph Castain
3e4165fd8d
Cleanup includes
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This commit was SVN r25418.
2011-11-02 18:28:28 +00:00
Ralph Castain
b77552c45d
Cleanup some include files, return a silent error in open/select as the complaining component already output a message
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This commit was SVN r25416.
2011-11-02 17:42:06 +00:00
Ralph Castain
55b996678e
Minor indentation changes
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This commit was SVN r25414.
2011-11-02 15:56:56 +00:00
Ralph Castain
f00753881e
Handle the case where mpirun -is- of the same topology as the compute nodes.
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This commit was SVN r25412.
2011-11-01 22:26:03 +00:00
Ralph Castain
d28dd55d33
Minimize the amount of topology info returned by the daemons. Most clusters, especially at scale, use the same node topology on every node, so there is no re
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ason to return the topology from every daemon. Borrow a page from the --hetero-apps page and let users indicate that the node topology differs by adding a --
hetero-nodes option to mpirun. If the option is set, then every daemon returns topology info. If not set, then only daemon vpid=1 returns it.
We always want one daemon to return the topology as the head node is often different from the compute nodes. Having one daemon return the compute node topolo
gy allows us to detect any such difference. All compute nodes are then set to the same topology.
This commit was SVN r25408.
2011-11-01 18:43:10 +00:00
Ralph Castain
14966e0f8f
Cleanup PMI startup - if a component isn't selected, it should finalize PMI IFF it started it. Otherwise, components that aren't selected can finalize PMI when it is in use by other parts of the system.
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This commit was SVN r25407.
2011-11-01 16:25:12 +00:00
Ralph Castain
d492b20975
Bozo check for topology info
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This commit was SVN r25398.
2011-10-30 11:49:38 +00:00
Ralph Castain
4232115a98
Ensure pruning remains within the current job/app being mapped.
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This commit was SVN r25397.
2011-10-30 00:02:20 +00:00
Ralph Castain
648c85b41b
Add a simple pattern mapper as an example of how to use the topology info to create desired mappings. Let the user specify a pattern based on resource types, and map that pattern across all available nodes as resources permit.
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Don't automatically display the topology for each node when --display-devel-map is set as it can overwhelm the reader. Use a separate flag --display-topo to get it.
This commit was SVN r25396.
2011-10-29 15:12:45 +00:00
Ralph Castain
12a589130a
Add some debug
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This commit was SVN r25395.
2011-10-29 15:07:58 +00:00
Ralph Castain
965b04d1a5
Use the new utilities to get a topology that reflects available cpus
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This commit was SVN r25394.
2011-10-29 15:07:36 +00:00
Ralph Castain
e50bcbf028
Add the ability to specify a topology-containing xml file to describe the simulated nodes to support mapping tests against arbitrary topologies
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This commit was SVN r25388.
2011-10-29 02:01:11 +00:00
Ralph Castain
7fa5f82d70
Add simulator component to support testing of large scale mapping methods. Automatically sets do-not-resolve and do-not-launch, and creates however many nodes the user wants to simulate in the system.
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This commit was SVN r25386.
2011-10-28 23:48:53 +00:00
Ralph Castain
e2eb8d5f78
Remove bad param registration - that param was already registered as an int_name in another location.
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This commit was SVN r25381.
2011-10-28 19:14:43 +00:00
Josh Hursey
6726590b1c
Remove the 'ess_node_rank' accessor from here. This caused running under 'tm' to segv at the orteds.
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It just looks like this part of the component was not updated during r25331. It was removed from the 'env' and 'slurm' environments in that patch. It looks like 'tm' was updated, but did not get this particular piece.
This commit was SVN r25380.
The following SVN revision numbers were found above:
r25331 --> open-mpi/ompi@b44f8d4b28
2011-10-28 17:41:35 +00:00
Josh Hursey
59ff1dbbfb
Fix indentation problem that caused a segv when running without regex.
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This was introduced in r25063.
This commit was SVN r25379.
The following SVN revision numbers were found above:
r25063 --> open-mpi/ompi@e58623cd5b
2011-10-28 13:39:32 +00:00
Samuel Gutierrez
922e41a318
fix typo. use PMI_Initialized for init status instead of PMI_Init.
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This commit was SVN r25377.
2011-10-27 22:27:30 +00:00
Ralph Castain
951d72692c
Reverse the #if direction so we report daemon failure to the errmgr - otherwise, we just hang if a daemon fails to start.
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Reviewed with Josh.
This commit was SVN r25366.
2011-10-25 19:09:52 +00:00
Ralph Castain
c55cba55a7
Totally trivial spelling fix
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This commit was SVN r25361.
2011-10-24 14:06:33 +00:00
Ralph Castain
955d8e7d46
Allow apps to use pmi when launched by mpirun, if desired, without affecting daemons
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This commit was SVN r25359.
2011-10-23 15:57:13 +00:00
Nathan Hjelm
e8af0d8589
don't use alps paffinity
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This commit was SVN r25358.
2011-10-21 22:52:03 +00:00
Abhishek Kulkarni
46952e9008
Fix C/R functionality in trunk. Intra-node checkpointing of a job now works as expected.
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Signed-off-by: Abhishek Kulkarni <adkulkar@osl.iu.edu>
This commit was SVN r25357.
2011-10-21 22:07:35 +00:00
Nathan Hjelm
7b1172b346
need a terminating character in the decoded string
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This commit was SVN r25355.
2011-10-21 16:46:28 +00:00
Nathan Hjelm
cd257ac707
fixed typo in pmi grpcomm
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This commit was SVN r25353.
2011-10-21 16:28:36 +00:00
Shiqing Fan
5711414eb7
Fix Windows build
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This commit was SVN r25351.
2011-10-21 14:46:58 +00:00
Ralph Castain
53ef085567
Fix a minor issue seen by Jeff in specific failure pathway
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This commit was SVN r25350.
2011-10-21 14:44:48 +00:00
Ralph Castain
3e72fccacf
Cray's PMI implementation is quite different from slurm's - they extended PMI-1 by adding some, but not all, of the PMI-2 APIs. So you can't just switch to using PMI-2 functions as it isn't a complete implementation. Instead, you have to selectively figure out which ones they have in PMI-2, and use any missing ones from PMI-1. What fun.
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Modify the configure logic and the PMI components to accommodate Cray's approach. Refactor the PMI error reporting code so it resides in only one place. Cray actually decided -not- to define the PMI-2 error codes, so we have to use the PMI-1 codes instead. More fun.
This commit was SVN r25348.
2011-10-21 04:54:38 +00:00
Nathan Hjelm
beb8d8ce32
pmi return code wtf
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This commit was SVN r25336.
2011-10-20 17:51:24 +00:00
Ralph Castain
84713d5a84
Fix singletons again - must have been broken for a very long time, which only shows how little anyone cares about this capability.
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This commit was SVN r25332.
2011-10-19 20:19:08 +00:00
Ralph Castain
b44f8d4b28
Complete implementation of the ess.proc_get_locality API. Up to this point, the API was only capable of telling if the specified proc was sharing a node with you. However, the returned value was capable of telling you much more detailed info - e.g., if the proc shares a socket, a cache, or numa node. We just didn't have the data to provide that detail.
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Use hwloc to obtain the cpuset for each process during mpi_init, and share that info in the modex. As it arrives, use a new opal_hwloc_base utility function to parse the value against the local proc's cpuset and determine where they overlap. Cache the value in the pmap object as it may be referenced multiple times.
Thus, the return value from orte_ess.proc_get_locality is a 16-bit bitmask that describes the resources being shared with you. This bitmask can be tested using the macros in opal/mca/paffinity/paffinity.h
Locality is available for all procs, whether launched via mpirun or directly with an external launcher such as slurm or aprun.
This commit was SVN r25331.
2011-10-19 20:18:14 +00:00
Ralph Castain
2958f3de34
Add some clarifying comments and a small efficiency improvement
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This commit was SVN r25322.
2011-10-18 18:30:43 +00:00
Ralph Castain
b771114086
Fix the fix :-)
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If the errmgr is going to try and hold the orted until all routes and children are gone, then the exit cmd must do the same. Otherwise, the orted exits immediately without waiting for routes to be dismantled, which is why we don't see the connections close.
Also cleanup some diagnostics and add some debug to more clearly see what's going on.
This commit was SVN r25321.
2011-10-18 17:56:37 +00:00
Ralph Castain
ae8e556d14
Okay, once again let's fix the vpid calculator. Identified problem with prior commit (some rmaps components already place their procs in the jdata->procs array, and others don't), so account for those variations.
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This commit was SVN r25315.
2011-10-18 15:50:11 +00:00
George Bosilca
749b63c09d
Provide a generic fix for the termination issue instead of r25248. The
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termination condition is to be checked at the daemon/HNP level not down
in the routing.
This commit was SVN r25313.
The following SVN revision numbers were found above:
r25248 --> open-mpi/ompi@b42ccc89b8
2011-10-18 03:07:37 +00:00
George Bosilca
f28890fbb7
Revert r25302 as it break the --bynode option.
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This commit was SVN r25311.
The following SVN revision numbers were found above:
r25302 --> open-mpi/ompi@d7a8553179
2011-10-18 02:48:17 +00:00
Ralph Castain
2fdd9c6dea
Ensure mpirun doesn't pick this component
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This commit was SVN r25307.
2011-10-17 22:28:28 +00:00
Ralph Castain
8f0ef54130
Complete implementation of pmi support. Ensure we support both mpirun and direct launch within same configuration to avoid requiring separate builds. Add support for generic pmi, not just under slurm. Add publish/subscribe support, although slurm's pmi implementation will just return an error as it hasn't been done yet.
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This commit was SVN r25303.
2011-10-17 20:51:22 +00:00
Ralph Castain
d7a8553179
Fix the mapping algo for computing vpids - it was borked for bynode operations when using nperxxx directives
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This commit was SVN r25302.
2011-10-17 19:49:04 +00:00
Ralph Castain
89a20de474
Remove unused includes. Ensure that the error log is at least always available as we otherwise segfault when reporting errors that occur prior to opening the errmgr framework
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This commit was SVN r25288.
2011-10-14 18:45:11 +00:00
Ralph Castain
07dbbc6513
Sorry for mid-day correction - but folks are trying to test this, and we didn't realize it was still ignored :-(
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This commit was SVN r25287.
2011-10-14 16:19:20 +00:00
Ralph Castain
054c485dcf
Cleanup a race condition and an unreliable method that caused us to not properly handle procs that trapped sigterm for cleanup purposes while ORTE was trying to kill them. Thanks to Rick Payne and Ian Wells of Cisco for spending weeks chasing this down.
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Fix a termination issue that caused procs local to mpirun to not be killed if they weren't calling into the library. Thanks to Terry Dontje for spending countless hours chasing his tail on this one! :-(
This commit was SVN r25285.
2011-10-14 15:39:54 +00:00
Ralph Castain
08fa9e1c6a
Correct include path
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This commit was SVN r25282.
2011-10-13 23:46:52 +00:00
Ralph Castain
b96ef2161d
Complete the PMI support. Generalize PMI operations to support both slurm and non-slurm environments. Correct some configuration issues - we really only want the PMI integration at the individual component level. Ensure that the pmi grpcomm component doesn't get selected when launching via mpirun by setting its priority below the bad component.
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Only verified in a slurm environment as that's all I have access to...
This commit was SVN r25275.
2011-10-12 20:59:25 +00:00
Ralph Castain
634f83fc52
Fix the routed components. All had errors, some completely broken. You cannot test
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0 == ORTE_EPOCH_CMP(target->epoch,ORTE_EPOCH_INVALID)
when epoch is not configured as this will always return true. This caused get_route to return an error in all non-binomial routed modules, and caused all components to return an error when delete_route was called.
So protect the checks with ORTE_ENABLE_EPOCH so we get the correct behavior.
This commit was SVN r25274.
2011-10-12 20:18:57 +00:00
Ralph Castain
24a46f2acb
These were missed by prior commit - need to remove lingering references to OPAL_HWLOC_HAVE_XML
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This commit was SVN r25272.
2011-10-12 16:54:03 +00:00
George Bosilca
872d377021
Tell what the update status is.
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This commit was SVN r25259.
2011-10-11 19:49:12 +00:00
Brian Barrett
98e98ce2c5
* opal_atomic_trylock is documented to return 0 if the lock was acquired,
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1 otherwise. It was doing the opposite, so this patch fixes the
return values. All uses (all in ORTE) used the actual return values,
not the documented values, so fix them as well.
This commit was SVN r25257.
2011-10-11 18:43:45 +00:00
Ralph Castain
2f38ff5e54
Ensure we don't try to build this module unless pmi is specifically requested
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This commit was SVN r25252.
2011-10-11 06:12:04 +00:00
Ralph Castain
baefdabd98
Add some debug. Now confirmed to work correctly (prior problem was with odin tcp connection, not code).
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This commit was SVN r25249.
2011-10-11 02:15:17 +00:00
Ralph Castain
b42ccc89b8
Although this didn't solve the earlier termination problem, the code will be required once we get connection terminations properly detected. If a daemon (or HNP) is trying to terminate, then we need to check for termination conditions whenever a route is lost - when all child connections are gone, then we are free to finalize.
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This commit was SVN r25248.
2011-10-10 21:41:49 +00:00
Ralph Castain
1aa1c2e9b4
Get the slurm pmi support working. Cannot use infiniband, of course, as the oob can't make the connection - may try other existing methods. Modex may not quite be working right yet
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as odin was having trouble making TCP connections, but at least the configure now works so things build, so save that for now
This commit was SVN r25247.
2011-10-10 21:39:10 +00:00
Swen Boehm
08b4322a1a
patched the lex files to not issue the following compiler warning:
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'yyunput' defined but not used
This commit was SVN r25246.
2011-10-10 18:13:04 +00:00
George Bosilca
649af6c925
Enumerated mixed with another type (int) is tolerated but
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easily fixable.
This commit was SVN r25241.
2011-10-09 03:54:52 +00:00
Terry Dontje
c6691b4122
clean up local procs when abort or abort signal happens
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This commit was SVN r25237.
2011-10-06 19:19:55 +00:00
George Bosilca
c6d6c9aece
Remove some #if by using the correct macro (aka. ORTE_EPOCH_CMP).
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This commit was SVN r25229.
2011-10-04 14:42:40 +00:00
Samuel Gutierrez
25cbf79592
modifications to ras alps. this commit allows users to mpirun without having to set id environment variables (BASIL_RESERVATION_ID, OMPI_ALPS_RESID). note, however, that we preserved the old behavior. if an id environment variable is set, it will be obeyed and our new code path is essentially bypassed. if we missed something, please yell at us. with this commit, the use of ras-alps-command.sh is no longer needed... at least that is our hope.
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This commit was SVN r25181.
2011-09-26 21:31:08 +00:00
Ralph Castain
8347385630
Fix the radix routed component.
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This commit was SVN r25175.
2011-09-22 09:32:53 +00:00
Ralph Castain
1cd7b02df3
Add a set of default errmgr components that support solely the default "everything dies on error" behavior. Set their priority to be selected by default, but provide params to adjust those priorities to allow other component selection.
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This commit was SVN r25139.
2011-09-13 22:03:45 +00:00
Ralph Castain
3c4f04f4d9
Ensure opal_hwloc_topology is NULL after being destroyed
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This commit was SVN r25138.
2011-09-13 19:21:10 +00:00
Nathan Hjelm
079ccdf8b1
fix debugger co-location launching
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This commit was SVN r25136.
2011-09-13 15:08:03 +00:00
Ralph Castain
ca7638553f
Remove stale code
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This commit was SVN r25133.
2011-09-12 23:00:41 +00:00
Ralph Castain
556a05566e
Silence warning
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This commit was SVN r25130.
2011-09-12 16:21:51 +00:00
Ralph Castain
92c7372e20
Per the RFC from Jeff, move hwloc from opal/mca/common to its own static framework ala libevent. Have ORTE daemons collect the topology info at startup and, if --enable-hwloc-xml is set, send that info back to the HNP for later use. The HNP only retains unique topology "templates" to reduce memory footprint. Have the daemon include the local topology info in the nidmap buffer sent to each app so the apps don't all hammer the local system to discover it for themselves.
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Remove the sysinfo framework as hwloc replaces that functionality.
This commit was SVN r25124.
2011-09-11 19:02:24 +00:00
Ralph Castain
2091e39bee
Record the file descriptor on the read event when building optimized
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This commit was SVN r25123.
2011-09-11 18:57:14 +00:00
Wesley Bland
f8740e5478
Correct a typo reported by Pasha.
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This commit was SVN r25109.
2011-08-30 18:44:52 +00:00
Ralph Castain
03ddf8520b
Resolve not-used warnings
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This commit was SVN r25101.
2011-08-27 14:27:15 +00:00
Wesley Bland
f542ecd578
Fix a couple of problems with the resil code not compiling.
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This commit was SVN r25099.
2011-08-27 03:21:00 +00:00
George Bosilca
a4245b8d63
Remove some warnings related to the resilience patch.
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This commit was SVN r25097.
2011-08-27 00:15:34 +00:00
George Bosilca
67ec5a0556
While doing cleanup remove pending warnings.
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This commit was SVN r25095.
2011-08-26 23:38:06 +00:00
Wesley Bland
4e7ff0bd5e
By popular demand the epoch code is now disabled by default.
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To enable the epochs and the resilient orte code, use the configure flag:
--enable-resilient-orte
This will define both:
ORTE_ENABLE_EPOCH
ORTE_RESIL_ORTE
This commit was SVN r25093.
2011-08-26 22:16:14 +00:00
Ralph Castain
1c08a4006c
Refactor some code to remove a few API handles from errmgr. Reviewed/tested by Wes.
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This commit was SVN r25064.
2011-08-18 16:24:45 +00:00
Ralph Castain
e58623cd5b
Bring alps back to full operations by correctly computing daemon names. Unfortunately, alps doesn't assign cnos rank in node-based order - i.e., cnos rank=0 isn't necessarily on the first node of the execution. So adjust when using static ports.
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Add some debug to nidmap
Ensure that the HNP's node name is not included in the regex when launching via rshbase as that node is automatically included in the daemon map.
This commit was SVN r25063.
2011-08-18 14:59:18 +00:00
Wesley Bland
a2a20c3766
I believe this should fix the race condition that Terry is seeing in the MTT
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tests. It appears that nothing in the errmgr was using the mutexes to protect
the odls child list.
This commit was SVN r25062.
2011-08-18 14:52:30 +00:00
Ralph Castain
23f47295a8
Add even more debug
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This commit was SVN r25053.
2011-08-16 16:41:33 +00:00
Ralph Castain
d624d43f69
Add more debug
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This commit was SVN r25052.
2011-08-16 15:47:37 +00:00
Ralph Castain
3d96497581
Add debug
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This commit was SVN r25050.
2011-08-16 12:22:05 +00:00
Shiqing Fan
7292ee2387
One .windows file is missing in the tarball.
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This commit was SVN r25049.
2011-08-15 10:21:25 +00:00
Shiqing Fan
3af7c9f7bb
Complete the MinGW build support on Windows.
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This commit was SVN r25048.
2011-08-15 09:47:23 +00:00
Shiqing Fan
627f1dd351
Correct several export declarations.
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This commit was SVN r25047.
2011-08-15 09:45:51 +00:00
Ralph Castain
ca3d29a1e6
Extend regex support to a bigger audience
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This commit was SVN r25046.
2011-08-12 21:02:48 +00:00
Ralph Castain
ea4e2c2db4
Unused variables
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This commit was SVN r25045.
2011-08-12 21:02:09 +00:00
Jeff Squyres
1cbfb53801
r24976 wasn't quite right -- you now actually get a warning if you
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specify btl_tcp_if_include because btl_tcp_if_exclude is defaulted to
the loopback devices.
This commit does a few things:
* Introduce a new OPAL MCA base function:
mca_base_param_check_exclusive_string(). It checks to see that the
''user'' does not set two MCA parameters that are mutually
exclusive by checking the source of those MCS param values.
* Use the above function in many BTLs (and the OOB TCP) to ensure
that <foo>_if_include and <foo>_if_exclude are not both specified
''by the user''.
* Re-arrange many of these BTLs to move their MCA registration code
into a separate component_register() function (vs. the
component_open() function).
This code has been nominally reviewed and checked by Ralph, George,
Terry, and Shiqing.
This commit was SVN r25043.
The following SVN revision numbers were found above:
r24976 --> open-mpi/ompi@8f4ac54336
2011-08-10 17:24:36 +00:00
Ralph Castain
b360c98afd
Per request from Pasha, revert r25004 - but modified a touch to reflect fact that opal_argv_append copies the provided string, so we don't need to print it and then free it.
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This commit was SVN r25037.
The following SVN revision numbers were found above:
r25004 --> open-mpi/ompi@2418831bea
2011-08-09 22:42:27 +00:00
Nathan Hjelm
aa3d302a05
use persistent rml_recv in iof
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This commit was SVN r25035.
2011-08-09 21:30:12 +00:00
Ralph Castain
f1951e7ccd
If we are abnormally terminating, then don't wait for orteds to report back. Send them a "halt_vm" command, which instructs them to kill their local procs and immediately terminate, doing their best to cleanup on the way out.
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Also do a little cleanup on debug output in rshbase.
This commit was SVN r25033.
2011-08-09 17:42:19 +00:00
Wesley Bland
67feeb6aca
Move the errmgr code back. This shouldn't cause the svn problems that I
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apparently caused last time. Sorry about that. This one will just be a big
changelog.
This commit was SVN r25016.
2011-08-08 16:01:08 +00:00
Wesley Bland
09274cd047
Make sure that the epoch is initialized everywhere so we don't get weird output
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during valgrind. This shouldn't have caused any problems with any actual
execution. Just extra warnings in valgrind.
This commit was SVN r25015.
2011-08-08 15:11:55 +00:00
Ralph Castain
8014e3429e
Don't double-count procs as they are launched
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This commit was SVN r25011.
2011-08-08 06:05:23 +00:00
Ralph Castain
4083dc617f
Fix computation of number of required files and file descriptors - it only depends on the total number of local procs, not on the number of procs in the entire job!
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This commit was SVN r25008.
2011-08-08 04:09:40 +00:00
Ralph Castain
8b3c562b84
Adjust verbosity levels to make it easier to debug at scale
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This commit was SVN r25006.
2011-08-07 21:14:21 +00:00
Ralph Castain
2418831bea
Pass the nodelist to the aprun command even when using all nodes
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This commit was SVN r25004.
2011-08-06 04:19:41 +00:00
Ralph Castain
bd8e43a2de
Correct debug output so it doesn't falsely report the module
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This commit was SVN r25003.
2011-08-05 20:30:34 +00:00
Ralph Castain
d603c79ab4
Fix the FAILED_TO_START scenario so orted doesn't segfault
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This commit was SVN r25002.
2011-08-05 20:29:50 +00:00
Ralph Castain
c86bfb4e90
Need to copy the string
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This commit was SVN r25001.
2011-08-05 19:03:28 +00:00
Ralph Castain
066022126e
Sort the nodes to be in numerically increasing order so the regex has a chance of working right.
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This commit was SVN r24993.
2011-08-05 03:37:13 +00:00
Jeff Squyres
294e1f50cd
Remove compiler warning about nested comment
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This commit was SVN r24984.
2011-08-03 18:30:56 +00:00
Wesley Bland
87a96da99c
Should fix some of the shutdown woes of the errmgr.
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Correctly checks that the orted's job is completed.
Correctly tests to make sure that there is shutdown going on (doesn't rely on orte_orteds_term_ordered).
Adds a patch from Ralph to correctdly check the status of processes.
This commit was SVN r24962.
2011-08-01 14:00:41 +00:00
Ralph Castain
42b125ef35
Move the debug so it more accurately reports
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This commit was SVN r24961.
2011-07-29 20:48:46 +00:00
Ralph Castain
70bca4691f
Add a new "sensor" module that supports fault tolerance tests - randomly kills local procs and/or the daemon itself
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This commit was SVN r24960.
2011-07-29 20:48:22 +00:00
Wesley Bland
5fde3e0e00
Move the resilient orte errmgr code into a seperate errmgr for now while it's
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still unstable. Reverted errmgr modules back to the original errmgr (with the
updates since the resilient code was brought into the trunk).
This commit was SVN r24958.
2011-07-28 21:24:34 +00:00
Ralph Castain
6c879f87fb
Add a new param "orte_remote_tmpdir_base" for those situations where the compute nodes require a different session directory head than the head node.
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This commit was SVN r24956.
2011-07-27 19:37:17 +00:00
Ralph Castain
decab98fb2
Do a little better job of catching up on missed mcast messages, and provide a way out of scenarios where catch-up is impossible.
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This commit was SVN r24955.
2011-07-27 14:58:30 +00:00
Ralph Castain
c3bc33b3fb
Don't be so restrictive - accept "slots" as well as "slot" in rank file
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This commit was SVN r24954.
2011-07-27 00:45:30 +00:00
Wesley Bland
b972fd84e1
No longer sends extra FAILED_NOTIFICATION messages in the non-failure case.
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Should reduce finalize complexity and avoid a race condition that has been
detected by a few users.
This commit was SVN r24952.
2011-07-26 20:47:44 +00:00
Ralph Castain
db193555c2
Use non-blocking sends for recovering from lost multicast messages
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This commit was SVN r24943.
2011-07-25 18:49:47 +00:00
Ralph Castain
869024f1c6
You have to initialize th daemon param -before- using it to get epoch!!
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This commit was SVN r24926.
2011-07-23 20:19:43 +00:00
Ralph Castain
361bcef253
Close multicast before rml
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This commit was SVN r24925.
2011-07-23 20:19:15 +00:00
Shiqing Fan
cc4403a863
Remove two unused windows files.
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This commit was SVN r24913.
2011-07-21 12:53:32 +00:00
Brian Barrett
3bd66a5932
* Remove unused Portals3.3 reference implementation support
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This commit was SVN r24906.
2011-07-20 23:30:29 +00:00
Eugene Loh
921852e1e5
Clean up the computations of num_procs_alive. Do some code
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refactoring to improve readability and to compute num_procs_alive
correctly and to remove the use of loop iteration variables for
two loops nested one inside another (causing MPI_Comm_spawn_multiple
to fail).
This commit was SVN r24903.
2011-07-14 20:10:48 +00:00
Ralph Castain
8853e0e80a
Fix regular expression analyzer for slurmd - use a slurm-specific version
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Fix multi-node routing for daemon startup when static ports are not set
This commit was SVN r24898.
2011-07-13 22:49:56 +00:00
Ralph Castain
8d1b31b887
Don't know how we got away with this for so long, but we really shouldn't be referencing pointer array objects directly.
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Also, fix an error in mpirx debugger module - the pointer array object is the pointer to the object itself, not the object "super" like in an opal_list.
This commit was SVN r24894.
2011-07-13 20:11:14 +00:00
Ralph Castain
1405bacd85
Ensure we dont segfault if we report an error
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This commit was SVN r24890.
2011-07-13 15:00:22 +00:00
Jeff Squyres
3893a5a1de
Fix compile error introduced in r24888.
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This commit was SVN r24889.
The following SVN revision numbers were found above:
r24888 --> open-mpi/ompi@e5253647ea
2011-07-13 14:18:00 +00:00
Shiqing Fan
e5253647ea
Fix a type cast.
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This commit was SVN r24888.
2011-07-13 09:00:17 +00:00
Nathan Hjelm
3f4e5d7dd6
add missing thread lock/unlock around condition_broadcast
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This commit was SVN r24885.
2011-07-12 15:43:56 +00:00
Nathan Hjelm
c3ec2e2614
fix a potential race condition in rml
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This commit was SVN r24884.
2011-07-12 15:43:12 +00:00
Abhishek Kulkarni
6bf02d1344
Fixes (after the new ORTE resiliency layer was merged) to make the trunk build with C/R flags turned on.
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This commit was SVN r24872.
2011-07-10 23:36:26 +00:00
Ralph Castain
05f4926bfe
Remove some remaining cruft re regular expressions - caused the trunk to fail if regex wasn't being used
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This commit was SVN r24861.
2011-07-08 06:42:12 +00:00
Ralph Castain
1ee7c39982
Fix some major bit-rot on scalable launch. If static ports are provided, then daemons can connect back to the HNP via the routed connection tree instead of doing so directly. In order to do that at scale, the node list must be passed as a regular expression - otherwise, the orted command line gets too long.
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Over the course of time, usage of static ports got corrupted in several places, the "parent" info got incorrectly reset, etc. So correct all that and get the regex-based wireup going again.
Also, don't pass node lists if static ports aren't enabled - they are of no value to the orted and just create the possibility of overly-long cmd lines.
This commit was SVN r24860.
2011-07-07 18:54:30 +00:00
Ralph Castain
6496b2f845
Ensure we terminate properly on non-zero exit status
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This commit was SVN r24859.
2011-07-07 14:33:49 +00:00
Wesley Bland
0628963506
Fix a return code when a process isn't found.
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This commit was SVN r24845.
2011-06-30 15:22:54 +00:00
Brian Barrett
e52fef28ca
Do something rational for the disable full support case
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This commit was SVN r24844.
2011-06-30 14:48:19 +00:00
Ralph Castain
8ac35a8496
Fully enable the monitoring of memory usage and automatic termination of memory hogs when limits are reached. Improve the efficiency of the sensor system so we don't multiply sample the resource usage if multiple modules are active. Ensure we output the proc error summary when we abnormally terminate.
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This commit was SVN r24843.
2011-06-30 14:11:56 +00:00
Ralph Castain
c449871ade
Add an mca param to set the "fork agent" - i.e., a program to be run when forking off a process (e.g., valgrind). While you could specify this by "mpirun -n N fork_agent ./my_app", not everyone launches procs with ORTE from mpirun.
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Provide the ability to store recent stat histories using the ring_buffer class
This commit was SVN r24842.
2011-06-30 03:12:38 +00:00
Ralph Castain
2e1fa3e08e
Don't error out if the recv.cancel comes back not found as this is just a race condition
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This commit was SVN r24841.
2011-06-30 01:19:50 +00:00
Wesley Bland
84be81df95
Standardize the initialization of the EPOCH's.
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Everyone will be starting at MIN anyway (until we implement restart of course)
so there's no reason to set the epoch to INVALID and then immediately reset them
to MIN. This way there's less room to make mistakes later.
This commit was SVN r24829.
2011-06-28 14:20:33 +00:00
Ralph Castain
d316701d3c
Remove unnecessary mcast channel
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This commit was SVN r24816.
2011-06-23 20:44:22 +00:00
Wesley Bland
e1ba09ad51
Add a resilience to ORTE. Allows the runtime to continue after a process (or
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ORTED) failure. Note that more work will be necessary to allow the MPI layer to
take advantage of this.
Per RFC:
http://www.open-mpi.org/community/lists/devel/2011/06/9299.php
This commit was SVN r24815.
2011-06-23 20:38:02 +00:00
Ralph Castain
391074cde6
Add a tag
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This commit was SVN r24813.
2011-06-23 15:12:25 +00:00
Samuel Gutierrez
81f38b258a
commit of new shared memory backing facility framework (shmem) and its components.
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This commit was SVN r24795.
2011-06-21 15:41:57 +00:00
Ralph Castain
9491fbb60c
Remove two stale modules
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This commit was SVN r24794.
2011-06-21 05:57:39 +00:00
Ralph Castain
b95ede99d5
Ensure we use the pmi grpcomm when using pmi
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This commit was SVN r24793.
2011-06-20 21:57:47 +00:00
Ralph Castain
92a65f21bf
Restore slurm pmi support from long, long ago. Since we already have the ability to directly srun an MPI job, just conditionally add the PMI support for key values and provide a grpcomm module that uses PMI for barriers and modex.
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Currently ompi_ignored, and unignored only for me (others to soon follow).
This commit was SVN r24792.
2011-06-20 21:04:46 +00:00
Ralph Castain
042ee3ec48
Support the option of outputting error_log messages with something other than the process name
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This commit was SVN r24784.
2011-06-17 14:50:00 +00:00
Ralph Castain
61dd7f4588
Need to pass identification of input/output channels
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This commit was SVN r24783.
2011-06-17 14:48:59 +00:00
Ralph Castain
93dcfc15d0
Let the upper layer set the channels to be opened
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This commit was SVN r24779.
2011-06-16 20:31:52 +00:00
Ralph Castain
7f2d2e3de7
Track the app_context rank - will equal overall rank for single app_context jobs
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This commit was SVN r24778.
2011-06-16 20:31:30 +00:00
Josh Hursey
0eb3b3b7b0
Fix missing functionality in MPI_Abort so that the group of peers defined by the communicator that should be aborted with this process are requested from the runtime before the local process exits.
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Per RFC:
http://www.open-mpi.org/community/lists/devel/2011/06/9335.php
This commit was SVN r24775.
2011-06-15 13:10:13 +00:00
Ralph Castain
033cbbed31
Don't automatically assign group channels if not given - let the layer above figure it out.
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This commit was SVN r24771.
2011-06-10 16:28:18 +00:00
Ralph Castain
e039c7b7ea
Avoid crashing when debugging rmaps and a non-string resource constraint is given
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This commit was SVN r24770.
2011-06-10 16:27:30 +00:00
Josh Hursey
9080eaedf3
Fully initialize the orte_errmgr_base_component_t structure for the app.
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This commit was SVN r24765.
2011-06-09 14:22:25 +00:00
Josh Hursey
20339a7900
Minor coding style and intentation fixes.
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This commit was SVN r24764.
2011-06-09 14:16:06 +00:00
Ralph Castain
fc8d920c56
Dont monitor resource usage unless requested, even if sensors are enabled during configure
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This commit was SVN r24760.
2011-06-08 10:47:25 +00:00
Ralph Castain
906eb925f1
Update the resource usage sensor to initiate support for time analysis of measurements
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This commit was SVN r24759.
2011-06-07 23:22:51 +00:00
Ralph Castain
f3cae3d6f3
Cleanup the handling of if_include and if_exclude arguments based on CIDR notation.
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Fix a bug in the new code that prevented the system from correctly matching addresses.
Remove comments in the show-help text indicating that we would continue in the face of incorrect specifications - leave that to the calling layer to decide.
Modify the new opal_ifmatches so it returns error codes letting the caller better understand the result.
Modify the oob to ensure we abort if we don't find interfaces matching specified constraints, and that we do so without multiple error messages.
NOTE: we have a conflict in our standards. We have been using comma-delimited lists of interfaces for all our params. However, one param - opal_net_private_ipv4 - now uses semicolons instead of comma separators. No idea why, but it is confusing.
This commit was SVN r24755.
2011-06-07 02:09:11 +00:00
George Bosilca
6b52d8f519
The paffinity is apparently needed.
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This commit was SVN r24749.
2011-06-06 01:20:01 +00:00
Ralph Castain
bd8d9a943a
Add diagnostics
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This commit was SVN r24748.
2011-06-05 19:17:56 +00:00
Ralph Castain
1491d52bd7
Extend the parsing capability of the oob tcp module's if_include and if_exclude options to support subnet+mask notation, and to handle virtual IP addresses (it was previously having problems distinguishing between "eth1" and "eth1.3").
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This commit was SVN r24747.
2011-06-05 19:16:42 +00:00
George Bosilca
454519842e
Report bindings if requested.
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This commit was SVN r24743.
2011-06-02 17:17:10 +00:00
George Bosilca
1eccadbd87
No need for the paffinity here.
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This commit was SVN r24742.
2011-06-02 17:16:25 +00:00
Ralph Castain
8f401a0563
Enable the ability to constrain applications to hosts on the basis of resources.
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This commit was SVN r24736.
2011-05-28 22:18:19 +00:00
Brian Barrett
beb1bc70b2
* Add support for using modex to exchange NID/PID pairs when using Portals4.
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Rather than try to support a bunch of lightweight environments like I did
with the Portals3 code, always use the "modex" and hack the grpcomm for
the SHMEM implementation to return the right nid/pid for a remote
process by "magic".
This commit was SVN r24733.
2011-05-25 22:10:27 +00:00
Ralph Castain
81b6c50daa
Correct stale typo
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This commit was SVN r24725.
2011-05-23 17:34:22 +00:00
Ralph Castain
661f508e62
Fix typo
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This commit was SVN r24723.
2011-05-22 00:20:42 +00:00
Ralph Castain
b2331113a5
Add some debug
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This commit was SVN r24722.
2011-05-21 21:09:47 +00:00
Ralph Castain
1b5ca323c6
Always followup with sigkill when killing local procs as procs can trap sigterm and get stuck
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This commit was SVN r24719.
2011-05-20 22:40:10 +00:00
Ralph Castain
c5686ecfca
Dont sample stats for pid=0 children
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This commit was SVN r24717.
2011-05-20 14:33:23 +00:00
Ralph Castain
b03e4481a3
Plug a couple of additional places in case orte_iof is not opened
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This commit was SVN r24716.
2011-05-20 13:42:53 +00:00
Ralph Castain
dc0bb0571b
Record the number of heartbeats recvd each period for diag purposes
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This commit was SVN r24714.
2011-05-20 00:21:33 +00:00
Ralph Castain
69dce0ec10
Minor heartbeat cleanups
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This commit was SVN r24713.
2011-05-19 21:27:44 +00:00
Ralph Castain
c3df95dd13
Prevent failure due to race condition during abnormal term
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This commit was SVN r24712.
2011-05-19 21:27:05 +00:00
Ralph Castain
b0f47e6f59
Allow orte_iof to not be opened
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This commit was SVN r24711.
2011-05-19 21:26:30 +00:00
Ralph Castain
1f3911cc8b
Add a new proc state
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This commit was SVN r24710.
2011-05-19 21:25:58 +00:00
Ralph Castain
b47ec2ee87
Remove lingering references to opal_profile option
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This commit was SVN r24709.
2011-05-18 18:27:29 +00:00
Ralph Castain
d34bab541d
Remove the ompi-profiler tool and its attendant ompi-probe program. Also remove the grpcomm basic component since its only function was to support profiled clusters, which nobody was doing. :-(
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This commit was SVN r24704.
2011-05-17 03:30:25 +00:00
Ralph Castain
a3e43594a4
Extend node stats to include additional memory info. Change "darwin" pstat module to "test" as we don't really know how to get all the stat info for darwin.
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Add a new OPAL_ERROR_LOG macro similar to the ORTE_ERROR_LOG one.
This commit was SVN r24692.
2011-05-08 14:45:16 +00:00
Ralph Castain
c160f5d5a2
Add ability to specify mcast interfaces by name
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This commit was SVN r24691.
2011-05-08 14:42:48 +00:00
Thomas Herault
fb3fd8fd0e
items belonging to peer_send_queue are mca_oob_tcp_msg_t *, which are obtained through a opal_freelist.
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They shouldn't be released, but returned to the freelist.
This commit was SVN r24679.
2011-05-03 21:03:09 +00:00
Ralph Castain
138928fcf4
Use ports as multicast channels instead of networks so we avoid stepping into reserved spaces.
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This commit was SVN r24666.
2011-04-29 18:46:40 +00:00
Shiqing Fan
4490fdbd34
Add the initial support for MinGW and MSYS.
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Correctly check the dependencies of MSYS env.
Set up configure include and lib path for building the package.
update a few more CMake scripts.
This commit was SVN r24663.
2011-04-29 14:42:07 +00:00
Ralph Castain
c78531ce8a
Don't free the envar that gets putenv'd as that messes up the environ
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This commit was SVN r24660.
2011-04-29 08:50:29 +00:00
Ralph Castain
b586f2952e
Arggg...revert r24645. I knew those fields were there for a reason...sigh.
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This commit was SVN r24647.
The following SVN revision numbers were found above:
r24645 --> open-mpi/ompi@e4732110da
2011-04-28 15:07:00 +00:00
Ralph Castain
859aaab93d
In the case of direct-launched processes running under slurm, psm requires that the pre_condition_transports MCA param be set. This is normally computed by mpirun and inserted into each proc's environ, but that doesn't work here.
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So separate out the printing of that key, and let the individual procs generate it in a way that ensures they all get the same result.
This commit was SVN r24646.
2011-04-28 13:54:33 +00:00
Ralph Castain
e4732110da
Remove a couple more stale fields
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This commit was SVN r24645.
2011-04-28 00:26:38 +00:00
Ralph Castain
9988b97b97
Extend/update how we handle process stats. Add the ability to collect node-level stats separate from the process stats. Update the process stat memory fields to report in MBytes instead of KBytes as I can't find any process that runs in KBytes nowadays.
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Rename the memusage sensor plugin to "resusage" as it will soon be updated to include full process stat monitoring.
Extend the heartbeat sensor to report node and process stats in the heartbeat.
Store the process and node stats in their respective orte_xxx_t object.
This commit was SVN r24629.
2011-04-21 22:55:45 +00:00
Ralph Castain
5f64b830f9
Ensure we only kill threads once
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This commit was SVN r24620.
2011-04-18 14:47:09 +00:00
Ralph Castain
89501e6e24
Don't try to politely end threads when abnormally terminating as we can hang if the thread is in a stuck callback.
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This commit was SVN r24618.
2011-04-18 12:21:47 +00:00
Ralph Castain
3a28556472
Expand our handling of non-zero exit status. If a process exits with non-zero status, pass that info along to the user in case it means something to them, even if the process also exited without calling MPI_Finalize. If the process calls MPI_Abort, that trumps the exit status question.
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Provide a new MCA param that allows the user to direct that we abort the job once a process exits with non-zero status. No recovery is allowed in such cases to avoid trying to restart a process that has already exited MPI.
This commit was SVN r24614.
2011-04-14 15:04:21 +00:00
Ralph Castain
30fb002524
Take the first small step towards rationalizing rsh support. Create a new "rshbase" component that contains a simple rsh module - no tree spawn, uses all the base functions for launch support. Extend the base rsh support functions to include those functions in common across all rsh modules.
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Only a minor change made to the current rsh module to avoid a naming conflict. Otherwise, left it alone to avoid creating conflicts with other external work. The current rsh module remains the default for rsh/ssh support, and continues to contain the support for SGE and Loadleveler.
This commit was SVN r24593.
2011-03-30 01:15:07 +00:00
Nysal Jan
866ae8b43a
Close the file descriptor
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This commit was SVN r24580.
2011-03-29 08:42:49 +00:00
Nysal Jan
c8c6b0edab
Improve LoadLeveler integration with Open MPI. Add support for LL native rsh agent - llspawn
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This commit was SVN r24579.
2011-03-29 07:46:59 +00:00
Nathan Hjelm
8634b6394f
fixed plm/tm component
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This commit was SVN r24577.
2011-03-25 22:20:15 +00:00
Ralph Castain
d7e029cb40
Convert heartbeat to multicast basis
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This commit was SVN r24570.
2011-03-24 19:05:39 +00:00
Ralph Castain
90698a2c02
Ensure that blocking recvs wait until the data is actually recvd
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This commit was SVN r24558.
2011-03-22 18:45:54 +00:00
Ralph Castain
888472f671
Do not release recv as the calling function needs that data and will release it later
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This commit was SVN r24557.
2011-03-22 18:44:56 +00:00
Ralph Castain
30981de200
Minor cleanups courtesy of Nysal - thanks!
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This commit was SVN r24552.
2011-03-22 13:48:58 +00:00
Ralph Castain
c1396b278c
Resolve the rsh confusion by splitting the initial search for a launch agent from the actual setup of the launch agent values in the plm base globals. Have each aspiring rsh-clone call lookup to see if their desired launch agent is available - if not, then reject that plm component.
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If so, then setup the actual launch agent values only when the module init function is called.
This resolves the current conflict between the rsh and rshd components. Hopefully, it may avoid future problems in this area -provided- any new uses of rsh-like launchers abide by the lookup-and-then-setup rule.
This commit was SVN r24550.
2011-03-22 02:23:09 +00:00
Ralph Castain
d17b50e1ff
Add the appropriate hooks to tell Totalview to display the user's main program upon startup. Apparently, this hook got lost somewhere after the 1.2 series :-(
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Thanks to David Turner and the TV folks for passing this along.
This commit was SVN r24549.
2011-03-21 17:40:58 +00:00
Ralph Castain
795ca2cff2
Complete implementation of the multicast-based grpcomm module
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This commit was SVN r24548.
2011-03-20 01:18:06 +00:00
Eugene Loh
2770a12beb
Continue clean up of thread options started in r22841, 22842, and 22849.
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No need for any CMRs to 1.5... that was already done in CMR 2728.
This commit was SVN r24545.
The following SVN revision numbers were found above:
r22841 --> open-mpi/ompi@b400b84162
2011-03-18 21:36:35 +00:00
Ralph Castain
ee68cd102c
Fix the hier grpcomm module so modex results in correct data. The prior implementation stored the modex data as node-based attributes. This worked fine for BTL's such as openib where the interfaces were associated with the node. However, BTL's such as TCP have interfaces associated with a specific process, not a node. Thus, store the data in the modex database so it is correctly indexed.
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This commit was SVN r24536.
2011-03-17 02:22:23 +00:00
Ralph Castain
d5dfe05521
Remove stale code associated with OPAL_THREADS_HAVE_DIFFERENT_PIDS. In the past, we have supported the case of really, really old Linux kernels where threads have different pids. However, when we updated the event library, we didn't also update that support code. In addition, when we dropped progress thread support, we didn't remove areas of the code that could no longer be compiled (i.e., were protected by "if progress thread && if have different pids).
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There was no compelling reason to support such old kernels. Accordingly, convert the test to print a nice error message indicating we no longer support old kernels (but indicate that earlier OMPI versions do) and error out. Remove all code that was protected by "if have different pids" since it can no longer be compiled.
This commit was SVN r24531.
2011-03-15 21:05:03 +00:00
Ralph Castain
de092af8ef
Add a little more debug
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This commit was SVN r24526.
2011-03-14 18:43:49 +00:00
Ralph Castain
dc6f616599
Enable VM launch.
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For some time, ORTE has had the ability to launch daemons on all nodes prior to launching an application. It has largely been used outside of the OMPI community, and so was never explicitly turned "on" inside OMPI releases. Nevertheless, the code has been there.
Allowing VM launches does not require ANY changes to existing PLM components. All that was required was to have orterun launch the daemons as a separate call to orte_plm.spawn -prior- to launching the applications. The rest of the VM support code resides in the rmaps framework:
(a) a check when asked to map a job to see if it is the daemon job, and
(b) a separate "setup_virtual_machine" mapper in the rmaps base that creates the required map so the PLM's will do the right thing.
In order to support those users who have no RM allocation but like to give the allocation in the form of a -host or -hostfile argument to their application, there is a little more code in orterun and the setup_virtual_machine mapper to capture information passed in that manner.
This has been tested with rsh and slurm environments, and, since there is nothing environment-specific in the implementation, should work in others as well - but needs to be proven.
This commit was SVN r24524.
2011-03-12 22:50:53 +00:00
Ralph Castain
80265b472e
Avoid direct reference of pointer_array elements
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This commit was SVN r24523.
2011-03-12 20:18:51 +00:00
Ralph Castain
df82e4cd36
Plug a memory leak
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This commit was SVN r24521.
2011-03-12 15:37:33 +00:00
Ralph Castain
1297acde13
George raised some valid concerns about the extensibility of the revised rmaps framework. Address those by:
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1. removing the enum of mapper values
2. change the req_mapper and last_mapper fields to char* so they can hold the component name instead of a mapper flag
3. revise the selection logic in the mapper components to reflect the change. Components now look for their name in the req_mapper field, or to see if other criteria (e.g., npernode) are set that mandate their doing the mapping
Several MCA params resided in the rmaps base for historical reasons - they have been in the base since at least the original 1.2 release (and perhaps earlier). However, George correctly pointed out that they really should reside in their respective components. Accordingly, move them to the components, but register synonyms to the old names to avoid breaking backward compatibility.
These revisions retain the current functionality of allowing comm_spawn'd jobs to use different mappers than the original job, and for the errmgr to utilize the resilient mapper to recover processes regardless of how they were originally mapped.
Given the large number of possible combinations, I am sure that someone will find a corner-case combination of values and selection criteria that cause either no mapper to be selected, or one other than the intended to be used. No one can test all the ways people will use this system, so I expect debugging to continue for awhile.
The ability of comm_spawn'd jobs to exploit this functionality relies on changes to the orte_dpm component - this will be committed separately.
This commit was SVN r24520.
2011-03-12 05:30:09 +00:00
Samuel Gutierrez
830c7c66dc
fixes CID #1667
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This commit was SVN r24518.
2011-03-12 03:09:01 +00:00
Ralph Castain
e6a76cc923
Fixes CID #1954
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This commit was SVN r24516.
2011-03-11 23:00:27 +00:00
Samuel Gutierrez
2a2319d23a
when orte_timing is enabled, always record daemon launch start time before starting the real work.
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This commit was SVN r24513.
2011-03-11 00:09:23 +00:00
George Bosilca
7f34a28c8f
Correct a comment.
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This commit was SVN r24504.
2011-03-10 00:41:41 +00:00
George Bosilca
d2502b14f9
Destruct the OOB TCP internal objects.
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This commit was SVN r24503.
2011-03-10 00:40:54 +00:00
Ralph Castain
3b4421d8e3
Separately track requested and last-used mapper so we don't lose that info
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This commit was SVN r24502.
2011-03-09 18:51:36 +00:00
Jeff Squyres
06d5c59115
Fix a few valgrind-reported memory leaks
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This commit was SVN r24498.
2011-03-08 17:37:28 +00:00
Jeff Squyres
0586612bd5
Fix another minor memory leak
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This commit was SVN r24495.
2011-03-08 15:46:13 +00:00
Ralph Castain
63f38e38bb
Fix ompi-server: remove extra command flag in buffer being sent to mpirun, ensure that tools route messages thru a remote HNP
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This commit was SVN r24491.
2011-03-05 17:12:46 +00:00
George Bosilca
9bbe00bdc3
Set the return code from the processes upstream.
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This commit was SVN r24483.
2011-03-03 00:02:21 +00:00
George Bosilca
c6a5f9706a
Thomas's patch: Assume we won't fail unless notified by a child.
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This commit was SVN r24482.
2011-03-02 23:50:01 +00:00
Josh Hursey
62bba1bf12
Name the enum so that it represents as an actual symbol in gdb, instead of just a number.
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This commit was SVN r24472.
2011-03-01 21:00:03 +00:00
Nysal Jan
4030111478
Add missing copyright and fix the year
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This commit was SVN r24446.
2011-02-23 15:52:06 +00:00
Nysal Jan
42a73bb887
POE is supported on both AIX and Linux. Build POE PLM only if we find the poe binary. Fix hostfile creation and POE command line arguments.
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This commit was SVN r24444.
2011-02-23 15:38:41 +00:00
Ralph Castain
f014284f91
Update resilient recovery mapping algorithm to be a bit more sophisticated. Track the prior node a proc was on so we avoid ricochet effect. Also avoid putting recovering proc onto node that is already occupied by a peer as this degrades fault tolerance.
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This commit was SVN r24417.
2011-02-20 18:46:21 +00:00
Ralph Castain
a8cf19a7bc
Ensure heartbeat only started once and only for daemon job
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This commit was SVN r24416.
2011-02-18 20:33:54 +00:00
Ralph Castain
ef56e6d78b
Helps to move the pointer
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This commit was SVN r24414.
2011-02-18 14:01:25 +00:00
Ralph Castain
7b35ada7fc
Fix ricochet effect - move failed procs to next on list instead of loadbalancing
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This commit was SVN r24413.
2011-02-18 13:11:55 +00:00
Ralph Castain
b98a2917ff
Add an API to the errmgr so that apps can register for a callback to warn them of an impending migration - this gives apps a chance to cleanly terminate prior to being migrated for external reasons (e.g., impending failures). The timeout provided indicates to the daemon how long it should wait before proceeding to kill/migrate the process - if the process fails to exit before that time, the daemon will kill it.
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This commit was SVN r24412.
2011-02-18 02:48:12 +00:00
Ralph Castain
51cf0a16c3
Some minor cleanups to support VM and CM operations
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This commit was SVN r24408.
2011-02-16 23:03:08 +00:00
Ralph Castain
9b48c07599
CM daemons handle their own output
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This commit was SVN r24407.
2011-02-16 23:02:23 +00:00
Ralph Castain
65ba6af44d
Cleanup our handling of VMs to ensure daemons don't get mapped when operating with a VM.
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Have each mapper flag it did the map so we can see who did it later.
Ensure procs are flagged as "ready to launch".
This commit was SVN r24406.
2011-02-16 23:01:57 +00:00
Jeff Squyres
3f4d4886f2
Minor update for something that has been bugging me for quite a while:
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OMPI supports multiple different repository systems (SVN, hg, git).
But the VERSION file has listed "want_svn" and "svn_r" as fields, even
though the actual repo system and version may not be SVN.
So search/replace those fields (and derrivative values that come from
those fields) with "want_repo_rev" and "repo_rev", respectively.
This commit was SVN r24405.
2011-02-16 22:53:23 +00:00
Ralph Castain
a32a7d9a82
Update heartbeat system
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This commit was SVN r24404.
2011-02-16 18:50:51 +00:00
Ralph Castain
9b38525d1e
Remove unused include files
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This commit was SVN r24394.
2011-02-16 00:32:47 +00:00
Ralph Castain
5120e6aec3
Redefine the rmaps framework to allow multiple mapper modules to be active at the same time. This allows users to map the primary job one way, and map any comm_spawn'd job in a different way. Modules are given the opportunity to map a job in priority order, with the round-robin mapper having the highest default priority. Priority of each module can be defined using mca param.
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When called, each mapper checks to see if it can map the job. If npernode is provided, for example, then the loadbalance mapper accepts the assignment and performs the operation - all mappers before it will "pass" as they can't map npernode requests.
Also remove the stale and never completed topo mapper.
This commit was SVN r24393.
2011-02-15 23:24:31 +00:00
Ralph Castain
c1da94a444
Dead children have no pid
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This commit was SVN r24387.
2011-02-15 13:30:51 +00:00
Ralph Castain
a3607ff35d
Make it easier to send a kill-local-procs command for an arbitrary number of procs
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This commit was SVN r24386.
2011-02-15 13:26:11 +00:00
Ralph Castain
bf1cff3711
Plug a couple of additional memory leaks - try to highlight a little better that strings returned from reg_string_name must be freed by caller
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This commit was SVN r24383.
2011-02-14 20:58:22 +00:00
Ralph Castain
a9dca25ca5
Remove the distinction between local and global restarts - leave it up to the error strategy to decide which to do.
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Cleanup the heartbeat handling so it is associated with the proc, not a node.
Cleanup handling of recovery options so that defaults do not override user values iff they are provided.
This commit was SVN r24382.
2011-02-14 20:49:12 +00:00
Ralph Castain
b5de068533
Clean up an error in r24371 - can't use a const parameter as target in asprintf as it changes the value of the address.
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Add some new proc/job states
Rename a constant to reflect coming change - remove the arbitrary difference between restarting a proc locally and relocating it to another node in terms of the number of restarts allowed.
Add pretty-print of signals for "proc aborted due to signal" reports.
This commit was SVN r24378.
The following SVN revision numbers were found above:
r24371 --> open-mpi/ompi@93d28a5792
2011-02-14 19:29:09 +00:00
Abhishek Kulkarni
93d28a5792
Change opal_err2str_fn_t to return the error string as an argument.
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This means that the converters (opal_err2str, orte_err2str) can now
return NULL as a "silent error". The return value of opal_err2str_fn_t
is the status of the operation (OPAL_SUCCESS or OPAL_ERROR).
This fixes the "Unknown error" message issues on the trunk.
This commit was SVN r24371.
2011-02-13 16:09:17 +00:00