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Граф коммитов

1251 Коммитов

Автор SHA1 Сообщение Дата
Gilles Gouaillardet
862b12acf9 configury: fix uninitialized variable in OMPI_FORTRAN_CHECK_USE_ONLY
Thanks Paul Hargrove for pointing this issue
2015-12-21 09:56:35 +09:00
Gilles Gouaillardet
985154eee6 configury: revamp the fortran_check_use_only test
split the test into three source files in order to avoid a false positive when using old XCode version and gcc 5
2015-12-17 13:12:07 +09:00
Ralph Castain
3a56f0d34b Create the pmix external component. Fix a few places where opal/util/argv.h were required when building with an external pmix (go figure).
NOTE: Building with external pmix *requires* that you also build with external libevent and hwloc libraries. Detect this at configure and error out with large message if this requirement is violated.

Closes #1204  (replaces it)
Fixes #1064
2015-12-15 15:26:13 -08:00
Howard Pritchard
7a82174747 Merge pull request #1195 from hppritcha/topic/wlm_detect
support Cray nativized slurm environment
2015-12-15 07:58:53 -07:00
Ralph Castain
03eb1a80bf Update the PMIx native component to release v1.1.1, with addition of one bug-fix commit beyond the official release
Rename the pmix1xx component to pmix111 so it reflects the actual release it includes

Resolve the problem of PMIx being passed a bogus --with-platform argument when configuring the PMIx tarball code. There is no reason we should be passing --with-platform arguments to any internal subdirectory, so just leave that out when constructing the opal_subdir_args variable.

Update the PMIx code and continue attempting to debug direct modex

Fix a problem in the ORTE PMIx server - there was an early intent to optimize the direct modex by fetching data for all procs from the target job on the remote node, instead of fetching the data one proc at a time. However, this was never completely implemented, and so we would hang if we had multiple overlapping requests for data from more than one proc on the node.

Update PMIx to v1.1.2
2015-12-12 18:46:38 -08:00
Jeff Squyres
e80f5681f3 orte_setup_java.m4: remove unused file 2015-12-10 11:59:57 -08:00
Nathan Hjelm
f692576f1e btl/openib: add check for IBV_EXP_QP_INIT_ATTR_ATOMICS_ARG
Mofed 2.2 does not have the IBV_EXP_QP_INIT_ATTR_ATOMICS_ARG attribute
flag. Add a check to fix compilation for mofed 2.2. This commit only
fixes complilation with the older mofed. It will not allow an Open MPI
compiled with mofed 2.3 or newer to work on a machine with mofed 2.2.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-12-09 17:02:36 -07:00
Howard Pritchard
9548b8a9e8 plm/alps: add wlm detect infrastructure
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-12-07 07:43:20 -08:00
Howard Pritchard
d7b437ecaa Merge pull request #1157 from gpichot/adds-darwin-headers-for-java
Adds darwin headers directory for Darwin JDK
2015-12-06 14:49:53 -07:00
Gabriel Pichot
ff5af73676 Adds usage of /usr/libexec/java_home for OS X platforms 2015-12-05 11:51:51 +01:00
Igor Ivanov
63bc655b53 oshmem: Remove JAVA support
There is a conclusion to remove java support
(see https://github.com/open-mpi/ompi-release/pull/787)
2015-12-03 11:59:07 +02:00
Nathan Hjelm
bb8e347371 btl/openib: update experimental verbs support
This update adds an additional check (if supported) to see if 8-byte
atomics are supported by the hardware. If 8-byte atomics are not
supported the atomics support is disabled.

This commit also includes some cleanup.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-11-30 12:32:04 -07:00
Gabriel Pichot
5e77bdeb25 Adds darwin headers directory with Darwin JDK 2015-11-28 17:54:43 +01:00
Nathan Hjelm
02a6c6856d btl/openib: add support for mlx5 atomic operations
This commit adds support for fetch-and-add and compare-and-swap when
using the mlx5 driver. The support is only enabled if the expanded
verbs interface is detected. This is required because mlx5 HCAs return
the atomic result in network byte order. This support may need to be
tweaked if Mellanox commits their changes into upstream verbs.

Closes open-mpi/ompi#1077

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-11-23 16:07:12 -07:00
Edgar Gabriel
497bd6f355 add a verification step looking for the structures that we use in the lustre component. Disable the ccomponent if not found. 2015-11-12 10:35:11 -06:00
Rolf vandeVaart
f2ff6e03ab Make CUDA 4.1 a requirement for CUDA-aware support.
Remove all related preprocessor conditionals.
2015-10-29 11:24:02 -04:00
Matias A Cabral
ed16d8e1cc Updated psm2 mtl with new externally exposed symbols of psm2.so
Fixes open-mpi/ompi#1018
Fixes open-mpi/ompi#1021
2015-10-28 09:12:33 -07:00
Mike Dubman
8490a96f22 Merge pull request #1041 from miked-mellanox/topic/build_platform
BUILD: add support for --with-platform-patches-dir=DIR
2015-10-21 11:20:40 +03:00
Alex Mikheev
f2b501a862 oshmem: Add UCX spml. 2015-10-20 19:46:02 +03:00
Mike Dubman
14d7fcbe2d BUILD: add support for --with-platform-patches-dir=DIR
sync with https://github.com/open-mpi/ompi-release/pull/662
2015-10-20 17:14:15 +03:00
Jeff Squyres
71dfba9ed3 Merge pull request #845 from ggouaillardet/topic/pmpi_vs_mpi
Remove --enable-mpi-profile configure option (i.e., always build PMPI bindings)
2015-10-13 12:13:10 -04:00
Jeff Squyres
f0741b8f2e Merge pull request #962 from ggouaillardet/topic/f08_manpages
Add Fortran 2008 syntax to the manpages
2015-10-13 06:19:53 -04:00
Gilles Gouaillardet
a88b4a741f configury: fix a typo in OPAL_CHECK_PACKAGE comment
no code change
2015-10-13 14:15:06 +09:00
Gilles Gouaillardet
645310612b configury: replace ompi_check_openib_happy with opal_check_openib_happy 2015-10-13 14:12:52 +09:00
Gilles Gouaillardet
3e469662ad trim man pages if no c++/f08/fortran 2015-10-13 10:21:42 +09:00
Gilles Gouaillardet
291a464efb configury: remove the --enable-mpi-profiling option
and directly call the PMPI_* symbols from C and Fortran bindings
2015-10-13 08:52:35 +09:00
Jeff Squyres
eeddb7abc1 ompi_setup_mpi_fortran.m4: add more verbosity
Add a little more to the verbose messages from d7e6daf.
2015-10-12 10:26:08 -07:00
Jeff Squyres
fcb7fc6b56 Merge pull request #990 from ggouaillardet/topic/f08_vs_pmpi
configury: do not build usempif08 is PMPI is not built
2015-10-12 13:24:22 -04:00
Gilles Gouaillardet
d7e6daf75f configury: do not build usempif08 is PMPI is not built
this is a revamp of commit open-mpi/ompi@2d1a8fa920
Thanks Jeff for the review !
2015-10-08 09:04:07 +09:00
Mike Dubman
a120fe4a14 BUILD: add --with-platform-patches-dir=DIR flag to configure
allow to override default patch dir to arbitrary.
2015-10-07 16:18:48 +03:00
Mike Dubman
eb883ae98f BUILD: allow specifying platform patch_dir from cmd line
before:

patch_dir=$PLATFORM.patches

after

patch_dir can be specified as ./configure <....> patch_dir=/usr/local/site_ompi_v_x.y_patches/
if not specified - use default
2015-10-07 09:31:49 +03:00
Gilles Gouaillardet
2d1a8fa920 fortran: do not build the f08 bindings if PMPI is not built 2015-10-05 09:43:46 +09:00
Mike Dubman
e280be3dff Revert "BUILD: log applied patches into config.log" 2015-10-04 08:12:05 +03:00
Mike Dubman
5d83aa8cdc BUILD: log applied patches to config.log 2015-10-01 10:06:17 +03:00
Mike Dubman
2333f8249f Merge pull request #914 from miked-mellanox/topic/platform_vendor_patches
BUILD: add support for platform specific patches
2015-09-30 09:22:41 +03:00
Mike Dubman
7502d2a779 BUILD: add support for vendor specific patches
./configure --with-platform=contrib/platform/$name will apply all patches
found in contrib/platform/$name.patches/ directory during "configure" phase.

It allows vendors to distribute not-accepted or vendor-specific patches as
part of standard ompi tarball and reduce burden of keeping private repos.

Added:

* VPATH support
* $srcdir/.platform_patches file created if patches already applied
* configure will fail with error if patch cannot be applied (using dry-run)
* configure will fail if patches modifying *.[am,m4] files (unsupported)
* remove unused patch_errors var
* set with_ident_string if platform file applied patches
2015-09-29 09:47:40 +03:00
bosilca
984b35b860 Merge pull request #633 from bosilca/topic/enable_atomics
Enable by default the _sync version of atomic operations on OS X.
2015-09-28 12:03:08 -04:00
Howard Pritchard
6cdb73ce77 configury: fix tkr macro so it can compile
The tkr m4's fortran couldn't be compiled
by gfortran.  pointer assignment followed by
variabl definition didn't compile.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-09-25 12:22:50 -05:00
Jeff Squyres
3698621df0 fortran ignore TKR: update for strange Intel 2016 compiler suite behavior
The Intel 2016 compiler suite apparently only partially supports the
!GCC pragmas (prior versions either didn't support it at all, or our
existing configure test was sufficient to disqualify !GCC pragma
support when compiling with the Intel compiler).

With the existing configure test, the Intel 2016 compiler suite would
*pass* the test and therefore think that it could use !GCC as the
"ignore TKR" pragma.  However, the "!GCC ATTRIBUTES NO_ARG_CHECK"
pragma doesn't work with scalar integers (although it seems to work
for the other types in this test).

This commit adds a scalar integer test to the ignore TKR pragma
configure test, which is enough to make the Intel 2016 compiler suite
fail with !GCC (this then allows configure to advance on to trying the
!DEC pragma, which *does* work properly with the Intel 2016 compiler
suite).

Thanks to Fabrice Roy for reporting the problem.

Fixes open-mpi/ompi#937.
2015-09-24 22:24:30 -07:00
Ralph Castain
0b3f4c55f8 Do not use "==" in configure "test" calls
Thanks to Kevin Buckley for pointing it out
2015-09-20 21:34:27 -07:00
Jeff Squyres
66dda00f06 fortran configiry: test for USE...ONLY support
As of v15.7, the PGI Fortran compiler does not properly support how
Open MPI uses the "USE ... ONLY" Fortran syntax to include modules
with conflicting symbol definitions (interestingly, pgfortran only has
a problem with this when compiling with -g).

In short, OMPI uses "USE :: module_aaa, ONLY: foo" and "USE ::
module_bbb, ONLY: bar" to use modules aaa and bbb, even though they
contain conflicting definitions for some symbols.  However, the use of
the ONLY clause should preclude the inclusion of the conflicting
symbols -- as the word implies, it should direct the compiler to
*only* use the symbols identified by the clause (i.e., foo and bar, in
this example).

This commit adds a configure test for this capability.  If the
compiler fails to build a simple test that mimics this behavior, then
disable the mpi_f08 bindings.

Fixes open-mpi/ompi#857
2015-09-02 15:55:24 -07:00
Nathan Hjelm
f451876058 Merge pull request #825 from hjelmn/white_space_purge
periodic trailing whitespace purge
2015-08-25 19:23:52 -06:00
Jeff Squyres
93708af013 ompi_setup_mpi_fortran.m4: only set BUILD_SIZEOF if happy=1
Only set OMPI_FORTRAN_BUILD_SIZEOF to 1 if $ompi_fortran_happy is also
1 (i.e., we're building the Fortran interface).  This prevents
building [p]size_f.f90 and trying to compile it if there is no Fortran
compiler, for example.
2015-08-25 07:12:18 -07:00
Nathan Hjelm
156ce6af21 periodic whitespace purge
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-08-24 09:32:33 -06:00
Jeff Squyres
699ab67598 Merge pull request #719 from ggouaillardet/poc/c_fortran_alignment
fortran: (try to) align C objects used by Fortran
2015-08-19 08:55:10 -04:00
Nathan Hjelm
551c2ea480 opal/asm: remove alpha support
This commit removes alpha asm support. No current processor
manufacturer makes chips compatible with DEC alpha and no
participating organization has alpha processors. This makes it
difficult to support alpha via assembly.

This doesn't mean Open MPI will no longer build/work on alpha
processors. It should continue to work with gcc's builtin sync
atomics.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-08-18 09:11:38 -06:00
Gilles Gouaillardet
99730f798b fortran: (try to) align C objects used by Fortran
Fortran uses objects (ompi_f08_mpi_comm_world, mpi_fortran_bottom,, ...) that are defined in C.
Some compilers have different requirements on how these objects should be aligned.
Smaller alignment in C can lead to several confusing warnings from the linker, so try to
find the alignment expected by Fortran compiler, and inform the C compiler.
2015-08-18 14:01:20 +09:00
George Bosilca
277269b641 Have the __sync atomics the default. Remove spurious checking and
result messages
2015-08-17 18:08:25 -04:00
George Bosilca
5aadf39545 Clean-up the OS X selection logic. 2015-08-17 18:08:16 -04:00
George Bosilca
3eaefd790c Enable by default the _sync version of atomic operations on OS X. 2015-08-17 18:08:03 -04:00