ports/openmpi
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Jeff Squyres
a172bd161e usnic: switch to use the new libfabric common library 
The usnic BTL configure.m4 no longer needs to OPAL_CHECK_LIBFABRIC; it
just uses the results from opal/mca/common/libfabric's configure.m4.
We also now don't need to link against libfabric -- they just link
against the opal_common_libfabric library.
 2015-06-25 13:33:15 -07:00
Ralph Castain
265cd14f60 Purge whitespace 2015-06-25 13:27:56 -07:00
Ralph Castain
8d128fe090 Remove the non-null attributes from the cmd_line parser as this isn't something we can guarantee, and the optimization isn't worth the potential for error 2015-06-25 13:26:20 -07:00
rhc54
8b62b63786 Merge pull request #666 from rhc54/topic/libfab 
Add a common/libfabric component
 2015-06-25 12:46:34 -07:00
rhc54
5e6670343e Merge pull request #673 from jsquyres/pr/mpi-extension-defaults 
MPI extensions: build extensions by default
 2015-06-25 12:38:26 -07:00
Jeff Squyres
fca193d316 MPI extensions: build extensions by default 
* affinity: will build unless disabled.
* cr: will build if FT is enabled, unless it is disabled.  It will
  also complain/abort if you --with-mpi-ext=cr, but FT is disabled.
* example: will only build if --with-mpi-ext=example (and .ompi_ignore
  is removed)
 2015-06-25 11:28:58 -07:00
Yohann Burette
7fd5ded327 mtl/ofi: message truncation is now indicated by FI_ETRUNC. 2015-06-25 11:06:41 -07:00
Yohann Burette
483ff23db1 mtl/ofi: cancels are now tracked by an error entry. 2015-06-25 11:06:41 -07:00
Ralph Castain
ea0e21bb06 Add a common/libfabric component to the opal layer where we can place common functions 2015-06-25 11:04:00 -07:00
Nathan Hjelm
ee36d813dc Merge pull request #657 from hjelmn/c99 
more c99 updates
 2015-06-25 11:21:09 -06:00
Howard Pritchard
f45914db9b Merge pull request #670 from hppritcha/topic/ownership_update 
ownership: update ownership files
 2015-06-25 11:02:45 -06:00
Nathan Hjelm
4d92c9989e more c99 updates 
This commit does two things. It removes checks for C99 required
headers (stdlib.h, string.h, signal.h, etc). Additionally it removes
definitions for required C99 types (intptr_t, int64_t, int32_t, etc).

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2015-06-25 10:14:13 -06:00
rhc54
1a767ed47c Merge pull request #654 from rhc54/topic/config 
Remove internal bool type definitions
 2015-06-25 09:10:21 -07:00
Howard Pritchard
e49a37c034 ownership: update ownership files 
per discussions at OMPI devel workshop

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-06-25 10:04:42 -06:00
Jeff Squyres
0bb3fd0a10 coll hierarch: remove last stale file 2015-06-25 08:40:50 -07:00
Jeff Squyres
6fe948913c NEWS: sync with v1.8.x branch 2015-06-25 06:53:01 -07:00
Ralph Castain
014a6a5969 Initialize variable to make clang happy 2015-06-24 22:01:09 -07:00
Nathan Hjelm
ea6a6cab09 Fix error in NEWS update 
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2015-06-24 18:25:58 -06:00
Nathan Hjelm
e561f150d6 Merge pull request #658 from hjelmn/mpit_fixes 
Fix definition of MPI_T_pvar_get_index
 2015-06-24 16:40:25 -07:00
Nathan Hjelm
4552afff06 Fix definition of MPI_T_pvar_get_index 
The definition of MPI_T_pvar_get_index was incorrect. This commit
fixes the definition and adds a missing return code.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2015-06-24 17:31:26 -06:00
George Bosilca
dc1b125b12 There is no destructor for the base requests. 2015-06-24 14:29:45 -07:00
bosilca
1b8556f926 Merge pull request #653 from hjelmn/moar_ob1_fixes 
pml/ob1: fix bugs in static request objects
 2015-06-24 14:28:11 -07:00
Nathan Hjelm
458cd9d611 Merge pull request #629 from hjelmn/aint_math 
Add support for MPI-3.1 MPI_Aint functions
 2015-06-24 10:52:44 -07:00
Nathan Hjelm
6dd9658d73 man: remove F77 notes from MPI_Aint_add/MPI_Aint_diff man pages 
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2015-06-24 11:49:48 -06:00
Nathan Hjelm
1a1492a530 Merge pull request #3 from jsquyres/hjelmn-aint_math 
mpi-f08: corrections to new MPI_Aint_* subroutines
 2015-06-24 10:44:03 -07:00
Jeff Squyres
258d1aa160 mpi-f08: corrections to new MPI_Aint_* subroutines 
(cherry picked from commit 8f252e65b02bfe20cacee0ece8c835246eea3bd9)
 2015-06-24 10:42:01 -07:00
rhc54
0f219068cc Merge pull request #656 from rhc54/topic/whitespace 
Purge whitespace from the repo
 2015-06-24 09:12:18 -07:00
Ralph Castain
536faf3f39 Add requested comment 2015-06-24 08:42:02 -07:00
Ralph Castain
24cc9358a6 Set the whitespace-purge.sh script to be executable 2015-06-24 08:29:26 -07:00
Ralph Castain
57b7c44aec Cleanup the rest of the no-longer-required bool configury 2015-06-24 08:25:49 -07:00
Ralph Castain
869041f770 Purge whitespace from the repo 2015-06-23 20:59:57 -07:00
Jeff Squyres
dc9932a786 README: OMPI needs a C99 compiler to build 2015-06-23 18:43:52 -07:00
Ralph Castain
db3c59b943 Silence a warning by converting the bitmap to a string prior to printing the error 2015-06-23 11:49:11 -07:00
Ralph Castain
a809902c0a Now that we require C99, and stdbool.h is part of C99, we no longer need to define our own bool types. Since bool is commonly used in a lot of places, just include stdbool.h in opal_config_bottom.h 2015-06-23 11:31:48 -07:00
Nathan Hjelm
9a8a87611e pml/ob1: fix bugs in static request objects 
This commit fixes several bugs in the static request objects used by
ob1 for blocking send/receive operations.

 - Fix memory leak when using MPI_THREAD_MULTIPLE. Requests were
   allocated off the free list but were destructed and NOT returned.

 - Fix double-destruct of static objects. There is no reason to
   CONSTRUCT/DESTUCT the static object for each send/receive
   operation. This adds overhead and no benefit. To keep the code
   clean helper functions have been added to finalize ob1 send/receive
   requests.

 - Remove now unnecessary include of alloca.h.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2015-06-23 11:00:45 -06:00
Jeff Squyres
5ce91b0bd6 README: fine-tune the definition of "backwards compatible" 2015-06-23 07:42:53 -07:00
Nathan Hjelm
ac51acb3e1 Merge pull request #651 from hjelmn/fix_thread_multiple_check 
pml/ob1: do not use OPAL_ENABLE_MULTI_THREADS to determine thread multiple support
 2015-06-22 21:45:43 -06:00
Nathan Hjelm
284dd6babe pml/ob1: do not use OPAL_ENABLE_MULTI_THREADS to determine thread multiple support 
OPAL_ENABLE_MULTI_THREADS is always on. The correct value to check is
OMPI_ENABLE_THREAD_MULTIPLE.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2015-06-22 19:17:23 -06:00
Andrew Friedley
a5cfbdd7fa Merge pull request #650 from afriedle-intel/afriedle-psm2-mtl 
Add new PSM2 MTL.
 2015-06-22 13:00:25 -07:00
Andrew Friedley
2c9be59b37 Add new PSM2 MTL. 
This new MTL runs over PSM2 for Omni Path.  PSM2 is a descendant of PSM
with changes to support more ranks and some MPI-3 features like mprobe.

PSM2 will only support Omni Path networks; PSM only supports True Scale.
Likewise, the existing PSM MTL will continue to be maintained for True
Scale, while the PSM2 MTL is developed and maintained for Omni Path.
 2015-06-22 07:55:46 -07:00
Jeff Squyres
74cf969561 openmpi-nightly-tarball.sh: now build 2.x nightlies 2015-06-22 06:17:56 -04:00
Gilles Gouaillardet
0bd765eddd fix NBC_Copy for legitimate zero size messages 
this fixes a regression from open-mpi/ompi@9a70765f27
 2015-06-22 09:51:25 +09:00
Jeff Squyres
ec44a25070 README: clarify OMPI's same-version requirements 
Clarify that Open MPI requires the exact same version number in all
parts of an Open MPI / OSHMEM job for it to work properly.
 2015-06-19 13:32:18 -07:00
Jeff Squyres
e9b59d8484 make_dist_tarball: don't make "o" writable 
We only need "ug" writable (so that we can delete stuff at the end).
No need to make "o" writable.
 2015-06-19 12:26:12 -07:00
Jeff Squyres
3ad89f16b8 openmpi-release.sh: haven't used "sowing" in years 2015-06-19 12:26:12 -07:00
Edgar Gabriel
3fcb88a727 Merge pull request #646 from edgargabriel/pr/non-blocking-coll 
Pr/non blocking coll
 2015-06-19 07:46:28 +02:00
rhc54
5d38283c7f Merge pull request #647 from rhc54/topic/hangs 
Ensure we properly commit suicide if/when we lose connection to the daemon.
 2015-06-18 10:25:07 -07:00
Ralph Castain
cc9b416ab3 Ensure we properly commit suicide if/when we lose connection to the daemon. There are multiple paths by which a lost daemon can be reported, and so a race condition exists in the pmix support. Our MPI layer wants the ability to determine the response to the failure, and so it will call down to the RTE with any abort request. This comes down to the pmix layer as a "pmix_abort" command, which involves communicating the request to the daemon - who is gone. Sadly, the pmix component may not know that just yet, and so we hang. 
So add a brief timer event to kick us out of the communication. The precise amount of time we should wait is somewhat TBD, but set something short for now and we can adjust.
 2015-06-18 09:45:52 -07:00
Edgar Gabriel
dedeee9771 finishing the changes for the non-blocking and split cpllective I/O operations. Everything except for the 
interface changes to the io framework is done.
 2015-06-18 06:22:41 -05:00
Edgar Gabriel
3b11a8b61c making the current work compile. 2015-06-18 05:56:51 -05:00