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Граф коммитов

20317 Коммитов

Автор SHA1 Сообщение Дата
Jeff Squyres
a1485569b9 If we don't find an OPAL dstore key (via modex), it's not an error --
we just didn't find it.  So don't ORTE_ERROR_LOG it.

cmr=v1.8.2:reviewer=rhc

This commit was SVN r31906.
2014-05-31 12:02:28 +00:00
Jeff Squyres
92ecb90a78 Use the C compiler to compile C codes, not the Fortran compiler
This commit was SVN r31905.
2014-05-30 10:39:54 +00:00
George Bosilca
6290f6cc58 Correctly deal with partially converted datatypes both
during the unpack and during the positioning.

Fixes trac:4610.

This commit was SVN r31904.

The following Trac tickets were found above:
  Ticket 4610 --> https://svn.open-mpi.org/trac/ompi/ticket/4610
2014-05-29 21:53:44 +00:00
MPI Team
843bc4f024 Update git/hg ignore files
This commit was SVN r31903.
2014-05-29 05:00:31 +00:00
Rolf vandeVaart
04e0d43371 Update ignore property.
This commit was SVN r31902.
2014-05-28 16:16:03 +00:00
Rolf vandeVaart
489664b4a9 Remove debug code.
This commit was SVN r31901.
2014-05-28 16:06:16 +00:00
Rolf vandeVaart
570e313c9b Add collective module to handle CUDA aware buffers and reductions. Per RFC sent last week.
Reviewed by bosilca.

This commit was SVN r31894.
2014-05-27 21:24:43 +00:00
Nathan Hjelm
2614dfc4bf bcol/basesmuma: fix remaining memory leaks in basesmuma
We were still leaking 1) file descriptors for data files, and 2) some
control files. I fixed both of these leaks and everything is looking
good. This should fix the bug where we are running out of file
descriptors when running the loop_spawn test. I also too the
opportunity to refactor the code a bit to make the mapping/unmapping
simpler. This should help avoid these sorts of issues in the future.

Depends on #4678

cmr=v1.8.2:reviewer=manjugv

This commit was SVN r31893.
2014-05-27 18:40:41 +00:00
Ralph Castain
f840013b41 Correct typo spotted by Gilles
This commit was SVN r31892.
2014-05-27 17:14:01 +00:00
Mike Dubman
7b05b5c4c2 HCOLL: use proper parameter in progress unregister
fixed by Nadezhda, reviewed by Elena/MikeD

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31891.
2014-05-26 09:03:30 +00:00
Gilles Gouaillardet
d04db1e213 Fix mmap flags in bcol_basesmuma_smcm_reg_mmap
if in_ptr is NULL, the MAP_FIXED flag cannot be passed to mmap

this caused a hang in topology/cart and topology/sub from ibm
test suite on trunk.

cmr=v1.8.2:reviewer=hjelmn

This commit was SVN r31890.
2014-05-26 07:18:31 +00:00
Gilles Gouaillardet
75616320b5 remove all message output from ompi/communicator/comm_helpers.c
Thanks George for pointing out.

cmr=v1.8.2:reviewer=bosilca:ticket=4676

This commit was SVN r31889.

The following Trac tickets were found above:
  Ticket 4676 --> https://svn.open-mpi.org/trac/ompi/ticket/4676
2014-05-26 01:54:24 +00:00
Gilles Gouaillardet
40f3b849eb Fix argument checks for [i]neighbor_alltoall{v|w}
This fixes a bug introduced in :
 - r31815 (trunk) 
 - r31853 (v1.8 branch)

cmr=v1.8.2:reviewer=bosilca

This commit was SVN r31888.

The following SVN revision numbers were found above:
  r31815 --> open-mpi/ompi@8bafe06c57
  r31853 --> open-mpi/ompi@bff944d766
2014-05-23 08:19:17 +00:00
Gilles Gouaillardet
de15b623b5 do not incrementing/decrementing the opal_progress_event_state.
Per Ralph :
"I noticed that we are incrementing and decrementing the opal_progress_event state.
However, this no longer has any impact whatsoever on the RML as that is running in
the independent ORTE event thread. So all this actually does is impact the MPI layer
by adding an unnecessary overhead."

Thanks Ralph for pointing this :-)

cmr=v1.8.2:reviewer=rhc:ticket=4671

This commit was SVN r31887.

The following Trac tickets were found above:
  Ticket 4671 --> https://svn.open-mpi.org/trac/ompi/ticket/4671
2014-05-23 05:02:31 +00:00
Gilles Gouaillardet
4843909a6b correctly allocate cart in mca_topo_base_cart_sub(...)
since r31716 mca_topo_base_comm_cart_2_2_0_t is an object
and must be allocated/freed with OBJ_NEW/OBJ_RELEASE.

this fixes topology/cart_sub_zero from the ibm test suite.

v1.8 does not use objects, so no cmr for this branch

This commit was SVN r31883.

The following SVN revision numbers were found above:
  r31716 --> open-mpi/ompi@e3df77548d
2014-05-23 03:07:46 +00:00
Nathan Hjelm
041b72b0cc plm/alps: better workaround for the noisy cray pmi implementation
This commit is a slightly better workaround to prevent mesages of
the form:
[unset]:_pmi_alps_get_apid:alps_app_lli_put_request failed
[unset]:_pmi_alps_get_appLayout:pmi_alps_get_apid returned with error: Bad file descriptor

It works by completely disabling PMI in the application process when using
mpirun. This should not be an issue for any apps.

cmr=v1.8.2:reviewer=rhc

This commit was SVN r31882.
2014-05-22 16:04:36 +00:00
Mike Dubman
f2b4e5b156 OSHMEM: add compat to prev mxm version
fixed by ROman, reviewed by MikeD

Refs: #4672

This commit was SVN r31881.
2014-05-22 10:03:02 +00:00
Mike Dubman
291bcaddf1 OSHMEM: fix compiler warnings
fixed by Roman, reviewed by Miked

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31880.
2014-05-22 06:51:28 +00:00
George Bosilca
ba211d97ef Remove a double const warning.
This commit was SVN r31879.
2014-05-22 06:09:45 +00:00
Mike Dubman
d9d5dd701b OSHMEM: fix - use real mkey for atomics for rc/dc
fixed by Roman, reviewed by Vasily

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31878.
2014-05-22 05:58:22 +00:00
George Bosilca
66e91f3797 Remove a warning on p.
And correctly handle the reference count from OBJ_NEW in the error
path (thanks Gilles for noticing).

This commit was SVN r31877.
2014-05-22 05:57:21 +00:00
George Bosilca
6ed1ac032e Release the buffer in all error cases and add small code cleanups.
This commit was SVN r31876.
2014-05-22 05:17:35 +00:00
MPI Team
ea159cae0b Update git/hg ignore files
This commit was SVN r31875.
2014-05-22 05:00:26 +00:00
Gilles Gouaillardet
5e9347bfb4 Fix deallocation error in mca_common_sm_rml_info_bcast()
buffer is sent (num_local_procs-1) time, so it should be
OBJ_RETAIN'ed (num_local_procs-2) time

cmr=v1.8.2:reviewer=rhc

This commit was SVN r31874.
2014-05-22 04:53:42 +00:00
Ralph Castain
7480a680e3 Turns out that valgrind has issues with strings that don't fall on nice 4-byte alignments with some optimized builds. So make the default security credential a nice 7-characters (so we get 8-bytes with the NULL terminator) to make valgrind shut up.
Thanks to Walter Spector for reporting this.

cmr=v1.8.2:reviewer=jsquyres:subject=align the default sec credential

This commit was SVN r31873.
2014-05-22 00:36:25 +00:00
Jeff Squyres
af5399ab5b Gah; we need to have a unique barrier ID for the ompi_rte_barrier()
operation.  Ralph will fix shortly.

For the time being, put back the original code...

Refs trac:4669

This commit was SVN r31872.

The following Trac tickets were found above:
  Ticket 4669 --> https://svn.open-mpi.org/trac/ompi/ticket/4669
2014-05-22 00:31:39 +00:00
Jeff Squyres
c860f289ab usnic: re-order teardown sequence now that del_procs() is actually called
Now that the infrastructure is calling BTL del_procs() before the BTL
finalize(), the usnic BTL had to re-order some of its teardown
sequence to avoid assert() failing.

This is part of a larger conversation involving #4669.  Since
MPI_FINALIZE and MPI_COMM_DISCONNECT currently use an
oob/grpcomm-based barrier, the usnic BTL can ''absolutely know'' that
these endpoints and procs will no longer be used.  If the ORTE DPM
goes back to a PML-based barrier, the usnic BTL will need to grow more
complex teardown semantics (a la TCP socket FIN/ACK/FIN_WAIT states).

Refs trac:4669

This commit was SVN r31871.

The following Trac tickets were found above:
  Ticket 4669 --> https://svn.open-mpi.org/trac/ompi/ticket/4669
2014-05-21 23:59:17 +00:00
Jeff Squyres
5aa05f2f1d Potentially temporarily change the barrier in the ORTE DPM component
to be based on grpcomm (i.e., an out-of-band based barrier) rather
than the simplistic PML-based barrier that it currently uses.

This is pending a larger discussion with Nathan and George, but it
will allow the usnic BTL to stop assert()-failing in light of the
recent del_procs() change.

This commit was SVN r31870.
2014-05-21 23:09:01 +00:00
Jeff Squyres
e532ab3020 atomic_impl.h: fix trivial typos in comments
cmr=v1.8.2:ticket=trac:4664

This commit was SVN r31858.

The following Trac tickets were found above:
  Ticket 4664 --> https://svn.open-mpi.org/trac/ompi/ticket/4664
2014-05-21 17:18:18 +00:00
Mike Dubman
c7723c0dcc update
This commit was SVN r31857.
2014-05-21 13:08:36 +00:00
Mike Dubman
5dd4c68a0f OSHMEM: use bulk connect/disconnect API
fixed by Yossi, reviewed by MikeD

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31856.
2014-05-21 08:00:21 +00:00
Mike Dubman
fad1063980 MXM: fix warning
reviewed by Yossi

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31855.
2014-05-21 07:50:05 +00:00
George Bosilca
cc0239d52f Remove unused variables.
This commit was SVN r31846.
2014-05-21 01:34:26 +00:00
George Bosilca
7ca7b54718 Removes few unreacheable warnings. This is somehow related to the
ticket #2645.

cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r31845.
2014-05-21 00:06:04 +00:00
Oscar Vega-Gisbert
c58900da95 Java-oshmem: some examples
This commit was SVN r31844.
2014-05-20 21:47:45 +00:00
Oscar Vega-Gisbert
1f017344ad Java-oshmem: replace Addr.offset/duplicate by slice
This commit was SVN r31843.
2014-05-20 21:12:39 +00:00
Oscar Vega-Gisbert
d42f03eb1f OSHMEM: rename atomic fetch&inc from 'pshmem_*' to 'shmem_*'
This commit was SVN r31842.
2014-05-20 20:45:07 +00:00
Jeff Squyres
b0a6e42f45 pml ob1: use the pre-computed size from the free lists
Based on a suggestion from George on #31806, use the pre-computed
sizes rather than duplicating the computation math (which may change
someday in the future).

cmr=v1.8.2:ticket=trac:4647

This commit was SVN r31841.

The following Trac tickets were found above:
  Ticket 4647 --> https://svn.open-mpi.org/trac/ompi/ticket/4647
2014-05-20 20:32:25 +00:00
Mike Dubman
a7cec59ec3 OSHMEM: missing APIs are back and can be used.
fixed by Roman, reviewed by MikeD

This commit was SVN r31840.
2014-05-20 20:11:41 +00:00
George Bosilca
db9660264e Update the error message to pinpoint the right location.
Thanks Tim.

This commit was SVN r31839.
2014-05-20 20:08:42 +00:00
George Bosilca
685f051557 Move the allocator initialization from open to init. This clean
a memory leak. Similar changes shuld be applied to all the 
other PML that are copies of OB1. This patch is related to
#4653.

This commit was SVN r31838.
2014-05-20 19:34:18 +00:00
Jeff Squyres
f8e37be1a9 oshmem/java: Add missing file to Makefile.am
cmr=v1.8.2:reviewer=osvegis

This commit was SVN r31837.
2014-05-20 16:32:41 +00:00
Gilles Gouaillardet
baf532087a Fix mca_coll_basic_alltoallw_inter()
Avoid sending/receiving zero size messages in order to be compliant
with the top-level modification

cmr=v1.8.2:ticket=4651:reviewer=bosilca

This commit was SVN r31836.

The following Trac tickets were found above:
  Ticket 4651 --> https://svn.open-mpi.org/trac/ompi/ticket/4651
2014-05-20 09:22:57 +00:00
George Bosilca
137874ec4d In fact btl_eager and btl_dma will just vanish upon destruction of the
bml_endpoint. No need to clean them bfore.

This commit was SVN r31835.
2014-05-20 08:53:22 +00:00
George Bosilca
85e3caaa17 Handle the del_procs correctly. The btl_send is the complete list
of existing BTL fo an endpoint, all the others are just partial list.
Thus, all the cleaning should first be done in the btl_send array,
and them in the other arrays (btl_eager and btl_rdma).

This commit was SVN r31834.
2014-05-20 08:46:57 +00:00
George Bosilca
1647664c43 Show the unreacheable message for the first unreacheable proc
and then stop.

This commit was SVN r31833.
2014-05-20 08:40:32 +00:00
Mike Dubman
6839f08159 OSHMEM: fix warning
fixed by Igor, reviewed by MikeD

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31832.
2014-05-20 05:52:31 +00:00
Gilles Gouaillardet
c496131eef Fixes *alltoall* collectives at top
- fix bugs
 - silent warnings

cmr=v1.8.2:ticket=4651:reviewer=bosilca

This commit was SVN r31831.

The following Trac tickets were found above:
  Ticket 4651 --> https://svn.open-mpi.org/trac/ompi/ticket/4651
2014-05-20 05:32:57 +00:00
Gilles Gouaillardet
ef4548a215 bml/r2 : fix mca_bml_r2_del_procs()
cmr=v1.8.2:reviewer=hjelmn:ticket=trac:4645

This commit was SVN r31830.

The following SVN revision numbers were found above:
  r2 --> open-mpi/ompi@58fdc18855

The following Trac tickets were found above:
  Ticket 4645 --> https://svn.open-mpi.org/trac/ompi/ticket/4645
2014-05-20 02:55:47 +00:00
Nathan Hjelm
27d3e1ca25 bml/r2: fix a problem identified by Gilles
This commit fixes two issues:

 - This intent of the code @ bml_r2.c:486 is to prevent calling the
   btl_del_procs more than once for a given proc. Gilles correctly
   identified there was a problem in this code but r31786 we not the
   correct fix.

 - Fix a segmentation fault in r2 finalize revealed by the fact we
   actually call del_procs now.

cmr=v1.8.2:reviewer=ggouaillardet:ticket=trac:4645

This commit was SVN r31829.

The following SVN revision numbers were found above:
  r2 --> open-mpi/ompi@58fdc18855
  r31786 --> open-mpi/ompi@fc96b0a7b8

The following Trac tickets were found above:
  Ticket 4645 --> https://svn.open-mpi.org/trac/ompi/ticket/4645
2014-05-19 20:22:34 +00:00