ports/openmpi
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Автор SHA1 Сообщение Дата
Jeff Squyres
a0ebbee6ef libnbc: __FUNCTION__ -> __func__ fixes 2015-08-05 05:27:23 -07:00
Nathan Hjelm
6265aaa354 Merge pull request #771 from hjelmn/lifo_fix 
opal/lifo: add missing opal_atomic_wmb and remove unnecessary opal_atomic_rmb
 2015-08-04 14:02:29 -06:00
Nathan Hjelm
6003a4dae1 opal/lifo: add missing opal_atomic_wmb and remove unnecessary opal_atomic_rmb 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-08-04 08:54:06 -06:00
Nathan Hjelm
45a8e8daff Merge pull request #770 from hjelmn/fifo_fix 
opal/fifo: add missing memory barrier
 2015-08-04 08:46:59 -06:00
Nathan Hjelm
9abccbd9fc opal/fifo: add missing memory barrier 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-08-03 16:22:28 -06:00
Howard Pritchard
36d7855280 Merge pull request #763 from nrgraham23/status_x_java_bindings 
Status x java bindings
 2015-08-03 09:26:16 -06:00
Gilles Gouaillardet
2fa8f4d53a Revert "fortran: optimize testall and waitall when MPI_STATUSES_IGNORE is used" 
Optimization was incorrect, so revert this commit.

This reverts commit 83375bcc5c.
 2015-08-03 08:45:12 +09:00
rhc54
e6017c802d Merge pull request #768 from rhc54/topic/segfault 
Fix an annoying segfault caused by incorrect indentation in a loop th…
 2015-08-01 11:10:37 -07:00
Ralph Castain
9bc384282a Fix an annoying segfault caused by incorrect indentation in a loop that causes the buffer to not be created prior to packing. 2015-08-01 10:01:47 -07:00
Jeff Squyres
f86a0c9f33 Merge pull request #765 from jsquyres/pr/usnic-libfabric-11-configury-update 
usnic libfabric 1.1 configury update
 2015-07-31 21:54:10 -04:00
Jeff Squyres
cbcd16b399 usnic: remove a stale shell variable name 2015-07-31 18:53:54 -07:00
Jeff Squyres
0ee8295e6e usnic: ensure that we have libfabric >= v1.1 2015-07-31 18:53:54 -07:00
Howard Pritchard
e4f1de3d3a Merge pull request #767 from hppritcha/topic/lanl_platform 
contrib/lanl: update Makefile
 2015-07-31 16:25:48 -06:00
Howard Pritchard
d4eb5addb0 contrib/lanl: update Makefile 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-07-31 14:38:48 -07:00
rhc54
c6cc1a9707 Merge pull request #766 from rhc54/topic/hwloc 
Update x86_32 cpuid assembly code.
 2015-07-31 12:53:16 -07:00
Jeff Squyres
2e7f794aae usnic: convert to use fi_recvmsg / FI_MORE 
Minor optimization to post 16 receive buffers at a time (vs. 1).
 2015-07-31 12:45:40 -07:00
Jeff Squyres
047eccef8d Merge pull request #725 from bosilca/treematch 
Add a new topo module: Treematch
 2015-07-31 15:17:54 -04:00
Ralph Castain
b42545b0cb Update x86_32 cpuid assembly code. Cheery-picked from 
open-mpi/hwloc@40f9978bcc
 2015-07-31 11:40:38 -07:00
Howard Pritchard
8649a9f6ef Merge pull request #757 from roblatham00/lustre-excl-open-fix 
hint processing should not open files
 2015-07-31 12:16:14 -06:00
Howard Pritchard
f18988c06f Merge pull request #764 from nrgraham23/Datatype.java_comment_fixes 
Commenting fixes for Datatype.java
 2015-07-31 12:03:04 -06:00
rhc54
a9b10cfbf0 Merge pull request #761 from jithinjosepkl/master 
Fix warnings in direct (pml-cm,mtl-ofi) build
 2015-07-31 09:15:30 -07:00
Ralph Castain
29d6044f7e Update 1.8.8 NEWS items 2015-07-30 17:48:31 -07:00
Edgar Gabriel
ffa67b9693 Performance tuning. make sure we catch if the user wants to set the default fileview and replace it with 
our optimized default file view. Otherwise, performance will suffer. file_get_view should still return the correct filetype, not our optimized default file view
 2015-07-30 19:15:00 -05:00
Edgar Gabriel
93a303ba89 Performance tuning: make sure the individual component is selected for 1 and 2 process communicators (important for some benchmarks) 2015-07-30 17:31:16 -05:00
Edgar Gabriel
9b2a7e41f0 make sure the final number of aggregators is recorded correctly when not using 
our aggregator selection logic.
 2015-07-30 17:24:01 -05:00
Nathaniel Graham
57b95fff2e Commenting fixes for Datatype.java 
Some of the @code tags were incorrect.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-30 15:17:55 -06:00
Nathaniel Graham
17c606b35c White Space Fixes 
Github revealed some wierd spacing issues.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-30 15:07:19 -06:00
Nathaniel Graham
2fecb06059 Status X Functons 
Includes java bindings for MPI_GET_ELEMENTS_X and
MPI_STATUS_SET_ELEMENTS_X.  This PR also adds the
Count object which represents MPI_Count.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-30 15:00:13 -06:00
Howard Pritchard
ac4197fb1b Merge pull request #760 from nrgraham23/request_get_status_java 
Java binding for MPI_REQUEST_GET_STATUS
 2015-07-30 13:57:06 -06:00
rhc54
21dde0bd6e Merge pull request #762 from nysal/topic/mrecv 
Fix an invalid memory access in mrecv & imrecv
 2015-07-30 10:43:38 -07:00
Rob Latham
6e9cbe397f hint processing should not open files 
move opening of files from hint processing and into open routines.

This is MPICH commit 92f1c69f0de8 and 22a77dceda11

see https://trac.mpich.org/projects/mpich/ticket/2261
Ref: https://github.com/open-mpi/ompi/issues/158

Signed-off-by: Pavan Balaji <balaji@anl.gov>
 2015-07-30 12:25:20 -05:00
Nysal Jan K.A
5a7bd898f9 Fix an invalid memory access in mrecv & imrecv 
After the call to PML mrecv/imrecv, the message handle
is set to MPI_MESSAGE_NULL. Use the cached communicator
while invoking the error handler.
 2015-07-30 19:52:40 +05:30
Jithin Jose
bc4e8b7e73 Fix warnings in direct (pml-cm,mtl-ofi) build 
Signed-off-by: Jithin Jose <jithin.jose@intel.com>
 2015-07-29 15:49:37 -07:00
Howard Pritchard
ea6f5b31fd Merge pull request #749 from nrgraham23/additional_comm_java_bindings 
Additional java bindings for the Comm class
 2015-07-29 16:17:54 -06:00
Edgar Gabriel
477083bca3 the memory chunk that has to be allocated for the llapi_get_stripe function seems to have changed compared to earlier version. This implementation now follows the code snipplet from the man pages. 2015-07-29 17:13:55 -05:00
Edgar Gabriel
217dcca853 - the memory chunk that has to be allocated for the llapi_get_stripe function seems to have changed compared to earlier version. This implementation now follows the code snipplet from the man pages. 
- implementation of file_get_size and set_size
 2015-07-29 17:10:39 -05:00
yohann
6eba52a121 mtl/ofi: add missing return. 2015-07-29 14:14:34 -07:00
Nathaniel Graham
9b5786d954 Java binding for MPI_REQUEST_GET_STATUS 
This adds the java binding for MPI_REQUEST_GET_STATUS.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-29 12:04:46 -06:00
Howard Pritchard
569764cd98 Merge pull request #759 from nrgraham23/status_java_bindings 
Java bindings for Status methods
 2015-07-29 10:36:56 -06:00
rhc54
6c7875f701 Merge pull request #758 from rhc54/topic/coverity 
Silence coverity warnings
 2015-07-29 09:30:35 -07:00
Nathaniel Graham
efe69c89a7 Java bindings for Status methods 
Includes java bindings for the MPI_STATUS_SET_ELEMENTS and
MPI_STATUS_SET_CANCELLED.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-29 09:47:03 -06:00
Ralph Castain
023936e84b Silence coverity warnings 2015-07-29 07:28:08 -07:00
Gilles Gouaillardet
83375bcc5c fortran: optimize testall and waitall when MPI_STATUSES_IGNORE is used 2015-07-29 10:00:27 +09:00
Edgar Gabriel
a3327fe299 Merge pull request #756 from edgargabriel/pr/nb-sharedfp-splitcoll2 
- make the split collective shared file pointer operations work
 2015-07-28 19:53:27 -05:00
Edgar Gabriel
3780089ce0 clean up the usage of opal_output vs. printf 2015-07-28 18:27:31 -05:00
Howard Pritchard
377bad18bd Merge pull request #747 from hppritcha/topic/ofi_progress_fix 
mtl/ofi: don't inline ofi progress method
 2015-07-28 09:42:01 -06:00
Edgar Gabriel
f09b834cab remove the C++ interfaces for the new non-blocking collective I/O functions. They are not defined in MPI 3.1 2015-07-28 09:28:37 -05:00
Edgar Gabriel
824d488709 - make the split collective shared file pointer operations work 
- minor code restructering in io/ompio required for that.
 2015-07-28 09:05:05 -05:00
Gilles Gouaillardet
429bdf1af7 oob/tcp: fix a race condition when finalizing the oob/tcp component 2015-07-28 09:16:13 +09:00
Edgar Gabriel
e380f8c235 - fix the delete priority of the ompio component 
- some application use MPI_File_delete as a collective function (e.g. IOR), which I think is not really covered by the standard. Right now, one process succeeds and theother ones return an error code. Fix that by not returning no error if the file that we try to delete does not exist anymore, to make these applications work.
 2015-07-27 15:53:40 -05:00