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Ralph Castain
b67b1e88a5 Merge pull request #4111 from rhc54/topic/multiconnect 
Cleanup some issues in connect/accept support across jobs started by …
 2017-08-17 12:49:01 -07:00
Ralph Castain
d85239e052 Cleanup some issues in connect/accept support across jobs started by different mpirun commands. Still not fully operational, but someone else will have to finish debugging it 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-08-17 11:58:48 -07:00
Ralph Castain
a855ebd86b Merge pull request #4110 from rhc54/topic/cov 
Silence coverity warnings
 2017-08-17 10:57:31 -07:00
Ralph Castain
088b6cdeee Silence coverity warnings 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-08-17 09:49:35 -07:00
Jeff Squyres
4e763796b1 Merge pull request #4100 from jsquyres/pr/fix-nmcheck-prefix 
nmcheck_prefix: more updates for more compilers
 2017-08-16 20:39:34 -04:00
Ralph Castain
1f799afa30 Merge pull request #4106 from rhc54/topic/hwloc 
Add diagnostics for hwloc get_topology
 2017-08-16 15:47:47 -07:00
Ralph Castain
41df973359 Add diagnostics for hwloc get_topology 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-08-16 14:21:27 -07:00
Jeff Squyres
cd8db5313e Merge pull request #4101 from jsquyres/pr/usnic-restore-configure-summary-line 
btl/usnic: restore configure usNIC summary line
 2017-08-16 16:36:19 -04:00
Josh Hursey
e0931714ea Merge pull request #4090 from jjhursey/config/old-xl-ppc-support 
config: Remove support for big endian PPC, XL compiler older than 13.1
 2017-08-16 15:31:35 -05:00
Ralph Castain
f21dfd3189 Merge pull request #4097 from rhc54/topic/dlopepn 
Change test per recommendation of @jsquyres
 2017-08-16 13:22:18 -07:00
Jeff Squyres
a591159fb4 btl/usnic: restore configure usNIC summary line 
Not sure how/when this got deleted, but put back the "Cisco usNIC"
line in the transport summary at the end of configure.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2017-08-16 12:37:59 -07:00
Jeff Squyres
9d09fe0151 nmcheck_prefix: more updates for more compilers 
Ignore a few more symbols to pass Absoft and modern gcc.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2017-08-16 12:28:49 -07:00
Ralph Castain
c4d5dbfcdc Change test per recommendation of @jsquyres 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-08-16 11:19:15 -07:00
Jeff Squyres
1f0b6f783c Merge pull request #4095 from jsquyres/pr/fix-compiler-warning 
rcash_base_frame: fix compiler warning
 2017-08-16 14:02:21 -04:00
Jeff Squyres
ce3a032b5e rcash_base_frame: fix compiler warning 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2017-08-16 09:48:31 -07:00
Ralph Castain
4cacd222d6 Merge pull request #4094 from rhc54/topic/pmix210rc1 
Update to PMIx v2.1.0a1
 2017-08-15 21:20:39 -07:00
Ralph Castain
eb69df02ae Update to PMIx v2.1.0rc1 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-08-15 19:59:15 -07:00
Ralph Castain
23ffbeb8f8 Merge pull request #4093 from rhc54/topic/toolsupport 
Update tool support by adding MCA params to direct orted's to drop
 2017-08-15 19:41:45 -07:00
Ralph Castain
65fb6070d9 Update tool support by adding MCA params to direct orted's to drop 
session and/or system-level tool rendezous files. Ensure PMIx is
enabled for tools

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-08-15 17:49:47 -07:00
Geoff Paulsen
f7137ecf98 Merge pull request #4086 from markalle/nm_test_fix 
updating nmcheck_prefix.pl to accept some more compiler-generated names
 2017-08-15 18:58:34 -05:00
Ralph Castain
d4c594fa72 Merge pull request #4091 from rhc54/topic/hostfile 
Fix hostfile filtering in allocated environments to preserve slot assignments
 2017-08-15 16:14:24 -07:00
Ralph Castain
37ec6d45c5 Merge pull request #4089 from rhc54/topic/errors 
Fix some build errors on master - fix typos in update-my-copyright
 2017-08-15 14:42:38 -07:00
Ralph Castain
2fbce9d93c Fix hostfile filtering in allocated environments to preserve slot assignments 
Refs #3984

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-08-15 14:41:12 -07:00
Joshua Hursey
12a015d90f config: Remove support for big endian PPC, XL compiler older than 13.1 
* Removes support for big endian PPC
 * Removes support for XL compiler older than 13.1
 * Fixes Issue #4053

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
 2017-08-15 17:01:36 -04:00
Ralph Castain
98f36711e3 Update hwloc to latest shmem branch. Correct typos in update-my-copyright.pl. 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-08-15 13:32:12 -07:00
Mark Allen
245006a23d updating nmcheck_prefix.pl to accept some more compiler-generated names 
Someone posted an MTT test where libmpi_usempi_ignore_tkr.so ended
up with symbols like these being identifed as errors:
    [error]   MPI
    [error]   _Cmpi_fortran_status_ignore
    [error]   _Cmpi_fortran_statuses_ignore
those must be compiler-generated names so we shouldn't identify them
as problematic.

Signed-off-by: Mark Allen <markalle@us.ibm.com>
 2017-08-15 15:48:22 -04:00
Ralph Castain
033a0eb373 Fix the --disable-dlopen --with-devel-headers case by not having libpmix link back to libopen-pal as the latter won't exist in time during this build case 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-08-15 10:51:35 -07:00
Edgar Gabriel
99c7482dd8 Merge pull request #3739 from cniethammer/sharedfp_sm_file_dir 
Create file for file backed shared memory in process job session dir.
 2017-08-15 11:53:30 -05:00
Edgar Gabriel
ec1a9a8218 Merge pull request #4057 from edgargabriel/pr/performance-fixes-2 
io/ompio: new aggregator selection algorithm
 2017-08-15 11:38:53 -05:00
Edgar Gabriel
8fe1c63e25 io/ompio: change the increment for cost based aggr. selection 
- change the increment used to test various no. of aggregators
  to avoid using only power of two numbers
- convert some paratemers in the cost function from integers to
  to floats for providing smoother and more consistent results
- set the FVIEW_IS_SET flag on the file *only* if the user
  has set anything else than the default file view.

Signed-off-by: Edgar Gabriel <gabriel@cs.uh.edu>
 2017-08-15 09:50:41 -05:00
Edgar Gabriel
f258036e06 fcoll/two_phase: adjust aggregator selection to new mapby flag on MPI_COMM_WORLD 
adjust how the aggregator nodes are selected depending on whether processes
have been mapped by node or anything else.

Signed-off-by: Edgar Gabriel <gabriel@cs.uh.edu>
 2017-08-15 09:50:41 -05:00
Edgar Gabriel
92eff9050c communicator/comm_init.c: add a new flag indicating binding policy 
Check for the binding policy used. We are only interested in
whether mapby-node has been set right now (could be extended later)
and only on MPI_COMM_WORLD, since for all other sub-communicators
it is virtually impossible to identify their layout across nodes
in the most generic sense. This is used by OMPIO for deciding which
ranks to use for aggregators

Signed-off-by: Edgar Gabriel <gabriel@cs.uh.edu>
 2017-08-15 09:50:41 -05:00
Edgar Gabriel
b3f59c76e1 io/ompio: new simple aggr. selection algorithm 
add a new aggregator selection algorithm based on the performance
model described in:

Shweta Jha, Edgar Gabriel,
'Performance Models for Communication in Collective I/O Operations'
Proceedings of the 17th IEEE/ACM Symposium
on Cluster, Cloud and Grid Computing, Workshop on Theoretical
Approaches to Performance Evaluation, Modeling and Simulation, 2017.

Signed-off-by: Edgar Gabriel <gabriel@cs.uh.edu>
 2017-08-15 09:50:41 -05:00
Jeff Squyres
0414c0c9d7 Merge pull request #3757 from ggouaillardet/topic/enable_builtin_atomics 
configury: abort when builtin atomics cannot be built and configure'd…
 2017-08-14 15:22:18 -04:00
Ralph Castain
0118e32165 Merge pull request #4076 from artpol84/revert_71da0f/master 
Revert "plm/rsh: Propagate PMIx prefix to orted's"
 2017-08-14 09:23:47 -07:00
Artem Polyakov
10d6e90bf5 Revert "plm/rsh: Propagate PMIx prefix to orted's" 
This reverts commit 71da0fcbef3e19e2c2f10fcc15da83229112a0e0.
(per https://github.com/open-mpi/ompi/pull/4052).
Refs: https://github.com/open-mpi/ompi/issues/3980

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2017-08-14 21:37:57 +07:00
Ralph Castain
84810adc24 Merge pull request #4075 from rhc54/topic/hwfix 
Apply patch from @bgoglin
 2017-08-11 09:39:12 -07:00
Ralph Castain
daf548b328 Apply patch from @bgoglin 
Fixes #4027

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-08-11 07:16:14 -07:00
Ralph Castain
0e9623faf8 Merge pull request #4073 from rhc54/topic/pmixup 
Update to latest PMIx v2.1.0a
 2017-08-11 01:38:14 -07:00
Ralph Castain
4290247d64 Update to latest PMIx v2.1.0a 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-08-10 18:48:07 -07:00
Jeff Squyres
03544d7cfa Merge pull request #4068 from jsquyres/pr/remove-f08-desc 
ompi/fortran: remove proof-of-concept mpi_f08 module
 2017-08-10 10:43:46 -04:00
Jeff Squyres
791bcee6c0 ompi/fortran: remove proof-of-concept mpi_f08 module 
This module was always intended to be a proof of concept, and was far
from complete.  If/when someone implemented F08 descriptor support for
the mpi_f08 module, this commit can either be restored or used as
reference material.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2017-08-10 06:19:17 -07:00
Jeff Squyres
1a70e5bd16 Merge pull request #3617 from ggouaillardet/topic/f08_mpiext 
fortran2008: fix mpiext example
 2017-08-10 09:16:30 -04:00
Ralph Castain
9324193d92 Merge pull request #4066 from rhc54/topic/patterns 
Provide the mapping, ranking, binding patterns
 2017-08-09 13:12:31 -07:00
Ralph Castain
edccb258cb Provide the mapping, ranking, binding patterns 
Apps might want to make use of the relative patterns used to place/assign their procs

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-08-09 11:34:43 -07:00
Howard Pritchard
6dfb48d866 Merge pull request #4056 from hppritcha/topic/swat_issue_4020 
mca/registry: fix problem group_component_register
 2017-08-09 10:25:00 -06:00
Jeff Squyres
6889948475 Merge pull request #4058 from thananon/pr/usnic_fix_credit 
btl/usnic: assign the number of send credit correctly.
 2017-08-09 11:46:42 -04:00
Gilles Gouaillardet
344f000841 configury: enable Fortran 2008 subarray prototype 
so Open MPI can be configure'd with --enable-mpi-f08-subarray-prototype

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-08-09 13:33:33 +09:00
Gilles Gouaillardet
dfe7b2be3f fortran/use-mpi-f08-desc: add a missing include file 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-08-09 13:19:22 +09:00
Gilles Gouaillardet
2c71c27882 fortran2008: fix mpiext example 
in order to solve an egg and the chicken problem,  in which mpiext need mpi-f08-types.mod
and/but use-mpi-f08[-desc] needs mpiext, add an extra step
- build fortran 2008 modules only
- build fortran 2008 mpi extensions
- and then build fortran 2008 bindings

Fixes open-mpi/ompi#3605

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-08-09 13:19:22 +09:00