The reference counting was broken which led PMIx_Finalize
to release resources early. This fixes the "use after free" scenarios
that I encountered.
(based on commit pmix/master@abfaa4c)
This reverts commit open-mpi/ompi@f7257a8310.
Ensure that we properly cleanup the session directory tree. Prior code had issues with symlinks, especially if the file that the link points to was already removed as we traverse the tree. Also found that the dirent checks for directory type weren't fully portable, and so fall back to the stat-based approach which is known to be portable.
Fix singularity singletons by detecting we are in a container and properly setting the pmix selection to pick the isolated component. Remove a stale restriction blocking use of the sm btl
This commit brings the scif btl up to date with changes made on master
to rework the mpool and rcache frameworks.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit uses the new flag "enumerator" to support comma-delimited
lists of flags for both the btl and btl atomic flags. After this
commit is is valid to specify something like -mca btl_foo_flags
self,put,get,in-place. All non-deprecated flags are supported by the
enumerator.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit adds a new type of enumerator meant to support flag
values. The enumerator parses comma-delimited strings and matches
each string or value to a list of valid flags. Additionally, the
enumerator does some basic checks to see if 1) a flag is valid in the
enumerator, and 2) if any conflicting flags are specified.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit adds the data necessesary for supporting dynamic add_procs
to the rdma message (opal_process_name_t). The endpoint lookup
function has been updated to match the code in udcm.
Closesopen-mpi/ompi#1468.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
Fix CID 1345825 (1 of 1): Dereference before null check (REVERSE_INULL):
ib_proc should not be NULL in this case. Removed the check and added a
check for NULL after OBJ_NEW.
CID 1269821 (1 of 1): Dereference null return value (NULL_RETURNS):
I labeled this one as a false positive (which it is) but the code in
question could stand be be cleaned up.
Fix CID 1356424 (1 of 1): Argument cannot be negative (NEGATIVE_RETURNS):
While trying to silence another Coverity issue another was
flagged. Protect the close of fd with if (fd >= 0).
CID 70772 (1 of 1): Dereference null return value (NULL_RETURNS):
CID 70773 (1 of 1): Dereference null return value (NULL_RETURNS):
CID 70774 (1 of 1): Dereference null return value (NULL_RETURNS):
None of these are errors and are intentional but now that we have a
list release function use that to make these go away. The cleanup is
similar to CID 1269821.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit changes the opal_fifo_push code to use
opal_update_counted_pointer to set the head. This fixes a data race
that occurs because the read of the fifo head in opal_fifo_pop
requires two instructions. This combined with the non-atomic update in
opal_fifo_push can lead to an ABA issue that puts the fifo in an
inconsistant state.
There are other ways this problem could be fixed. One way would be to
introduce an opal_atomic_read_128 implementation. On x86_64 this would
have to use the cmpxchg16b instruction. Since this instruction would
have to be in the pop path (and always executed) it would be slower
than the fix in this commit.
Closesopen-mpi/ompi#1460.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
Fix CID 1356358: Null pointer dereferences (REVERSE_INULL):
flist->fl_mpool can no longer be NULL. Removed the conditional.
Fix CID 1356357: Resource leaks (RESOURCE_LEAK):
Added the call to free the hints array.
Fix CID 1356356: Resource leaks (RESOURCE_LEAK):
This is a false error but it is safe to call close (-1) so just always
call close.
Fix CID 1356354: Control flow issues (MISSING_BREAK):
Fix CID 1356353: Control flow issues (MISSING_BREAK):
Add comments that indicate the fall-through is intentional.
Fix CID 1356351: Null pointer dereferences (FORWARD_NULL):
Fix potential SEGV if the page_size key is malformed.
Fix CID 1356350: Error handling issues (CHECKED_RETURN):
Add (void) to indicate that we do not care about the return code of
sscanf in this case.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
+ Added an mca parameter to allow connecting processes from different
subnets. Its current default value is 'false' - don't allow, to keep the
current flow the way it is now.
+ rmdacm: when calling ibv_query_gid, use the gid index from
btl_openib_gid_index.
This means we need not check for jemalloc in the configure script for
this component. Removing this.
In some machines having the TLS option on can cause errors in
opening this component. --disable-tls while configuring jemalloc.
Please look for instructions for installing jemalloc as a static
library linked directly into memkind in CONTRIBUTING file
github.com/memkind/memkindw
This commit rewrites both the mpool and rcache frameworks. Summary of
changes:
- Before this change a significant portion of the rcache
functionality lived in mpool components. This meant that it was
impossible to add a new memory pool to use with rdma networks
(ugni, openib, etc) without duplicating the functionality of an
existing mpool component. All the registration functionality has
been removed from the mpool and placed in the rcache framework.
- All registration cache mpools components (udreg, grdma, gpusm,
rgpusm) have been changed to rcache components. rcaches are
allocated and released in the same way mpool components were.
- It is now valid to pass NULL as the resources argument when
creating an rcache. At this time the gpusm and rgpusm components
support this. All other rcache components require non-NULL
resources.
- A new mpool component has been added: hugepage. This component
supports huge page allocations on linux.
- Memory pools are now allocated using "hints". Each mpool component
is queried with the hints and returns a priority. The current hints
supported are NULL (uses posix_memalign/malloc), page_size=x (huge
page mpool), and mpool=x.
- The sm mpool has been moved to common/sm. This reflects that the sm
mpool is specialized and not meant for any general
allocations. This mpool may be moved back into the mpool framework
if there is any objection.
- The opal_free_list_init arguments have been updated. The unused0
argument is not used to pass in the registration cache module. The
mpool registration flags are now rcache registration flags.
- All components have been updated to make use of the new framework
interfaces.
As this commit makes significant changes to both the mpool and rcache
frameworks both versions have been bumped to 3.0.0.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
Add primitive magic number and version checking in the connectivity
checker protocol. These checks doesn't *guarantee* to we won't get
false PINGs and ACKs, but they do significantly reduce the possibility
of interpretating random incoming fragments as PINGs or ACKs.
The btl_recv.h:lookup_sender() function uses the hashed ORTE proc name
to determine the sender of the packet. With add_procs_cutoff>0, the
usnic BTL may not have knowledge of all the senders.
Until the usNIC BTL can be adjusted to do something like the
openib/ugni BTLs (i.e., use opal_proc_for_name() to lookup unknown
sender proc names), set MCA_BTL_FLAGS_SINGLE_ADD_PROCS, which means
that ob1 will only all add_procs() once -- with all the procs in it.
Also in this commit, adapt the connectivity checker to not rely on
knowing all the senders (which is a bit easier than adapting the main
BTL send path): the receiving connectivity agent will simply echo back
the same PING message (which contains the sender's IP address+UDP
port) back to the sender without checking that it knows who the sender
is. If the sender receives the echoed PING back on the expexted
interface, it will find a match in the pending pings list. If the
sender receives the echoed PING back an unexpected interface, a match
will not be found, and the incoming PING message will be dropped.
Fixesopen-mpi/ompi#1440
This commit fixes an inconsistency between btl_openib_receive_queues,
btl_openib_max_send_size and btl_openib_eager_limit. Before this
commit if the ini file specified a set of default receive queues that
happen to not contain one large enough for the default max_send_size
of eager_limit users would see an error like:
WARNING: The largest queue pair buffer size specified in the
btl_openib_receive_queues MCA parameter is smaller than the maximum
send size (i.e., the btl_openib_max_send_size MCA parameter), meaning
that no queue is large enough to receive the largest possible incoming
message fragment. The OpenFabrics (openib) BTL will therefore be
deactivated for this run.
Local host: somehost
Largest buffer size: 65536
Maximum send fragment size: 131072
This commit adds code that detects the source of the max_send_size and
eager_limit values and sets either or both of them to the size
supported by the largest queue pair if both 1) the value is larger
than the largest queue pair size, and 2) the value was not set by the
user or a MCA configuration file.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit adds two m4 macros: OPAL_SUMMARY_ADD, OPAL_SUMMARY_PRINT.
OPAL_SUMMARY_ADD adds an item to a section in the summary. For example
OPAL_SUMMARY_ADD([[Transports]],[[Foo]],...,[yes]) will add the
following to the summary:
Transports
-----------------------
Foo: yes
With this commit two sections are added: Transports, Resource Managers.
The OPAL_SUMMARY_PRINT macro is called after AC_OUTPUT and prints out
some information about the build (version, projects, etc) and then
the summarys sections. It will additionally print a warning if
internal debugging is enabled.
Example output:
Open MPI configuration:
-----------------------
Version: 3.0.0 a1
Build Open Platform Abstration project: yes
Build Open Runtime project: yes
Build Open MPI project: yes
Build Open SHMEM project: no
MPI C++ bindings (deprecated): no
MPI Fortran bindings: mpif.h, use mpi, use mpi_f08
Debug build: yes
Transports
-----------------------
Cray uGNI (Gemini/Aries): no
Intel Omnipath (PSM2): no
KNEM Shared Memory: no
Linux CMA IPC: no
Mellanox MXM: no
Open UCX: no
OpenFabrics libfabric: no
OpenFabrics Verbs: no
portals4: no
QLogic Infinipath (PSM): no
tcp: yes
XPMEM Shared Memory: no
Resource Managers
-----------------------
Cray Alps: no
Grid Engine: no
LSF: no
Slurm: yes
Torque: yes
INTERNAL DEBUGGING IS ENABLED. DO NOT USE THIS BUILD FOR PERFORMANCE MEASUREMENTS!
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
