Adding memkind component to use MPI_Alloc_mem through memkind
Этот коммит содержится в:
Vishwanath Venkatesan
Nathan Hjelm
родитель
d4afb16f5a
Коммит
3d98a1a01e
41
opal/mca/mpool/memkind/Makefile.am
Обычный файл
41
opal/mca/mpool/memkind/Makefile.am
Обычный файл
@ -0,0 +1,41 @@
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# -*- indent-tabs-mode:nil -*-
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#
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# Copyright (c) 2011-2013 Los Alamos National Security, LLC. All rights
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# reserved.
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#
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# Additional copyrights may follow
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#
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# $HEADER$
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#
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# Make the output library in this directory, and name it either
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# mca_<type>_<name>.la (for DSO builds) or libmca_<type>_<name>.la
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# (for static builds).
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AM_CPPFLAGS = $(mpool_memkind_CPPFLAGS)
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if MCA_BUILD_opal_mpool_memkind_DSO
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component_noinst =
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component_install = mca_mpool_memkind.la
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else
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component_noinst = libmca_mpool_memkind.la
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component_install =
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endif
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memkind_SOURCES = \
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mpool_memkind_component.c \
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mpool_memkind_module.c \
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mpool_memkind.h
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mcacomponentdir = $(opallibdir)
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mcacomponent_LTLIBRARIES = $(component_install)
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mca_mpool_memkind_la_SOURCES = $(memkind_SOURCES)
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nodist_mca_mpool_memkind_la_SOURCES = $(memkind_nodist_SOURCES)
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mca_mpool_memkind_la_LIBADD = $(mpool_memkind_LIBS)
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mca_mpool_memkind_la_LDFLAGS = -module -avoid-version $(mpool_memkind_LDFLAGS)
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noinst_LTLIBRARIES = $(component_noinst)
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libmca_mpool_memkind_la_SOURCES = $(memkind_SOURCES)
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nodist_libmca_mpool_memkind_la_SOURCES = $(memkind_nodist_SOURCES)
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libmca_mpool_memkind_la_LIBADD = $(mpool_memkind_LIBS)
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libmca_mpool_memkind_la_LDFLAGS = -module -avoid-version $(mpool_memkind_LDFLAGS)
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42
opal/mca/mpool/memkind/configure.m4
Обычный файл
42
opal/mca/mpool/memkind/configure.m4
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@ -0,0 +1,42 @@
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# -*- shell-script -*-
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#
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# Copyright (c) 2013-2014 Los Alamos National Security, LLC. All rights
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# reserved.
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# $COPYRIGHT$
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#
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# Additional copyrights may follow
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#
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# $HEADER$
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#
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AC_DEFUN([MCA_opal_mpool_memkind_CONFIG],[
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OPAL_VAR_SCOPE_PUSH([opal_mpool_memkind_happy])
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AC_CONFIG_FILES([opal/mca/mpool/memkind/Makefile])
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AC_ARG_WITH([memkind], [AC_HELP_STRING([--with-memkind(=DIR)]),
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[Build with MEMKIND, searching for headers in DIR])])
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OPAL_CHECK_WITHDIR([memkind], [$with_memkind], [include/memkind.h])
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opal_mpool_memkind_happy="no"
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if test "$with_memkind" != "no" ; then
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if test -n "$with_memkind" -a "$with_memkind" != "yes" ; then
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opal_check_memkind_dir=$with_memkind
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fi
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OPAL_CHECK_PACKAGE([mpool_memkind], [memkind.h], [memkind], [memkind_malloc], [-ljemalloc, -lnuma],
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[$opal_check_memkind_dir], [], [opal_mpool_memkind_happy="yes"], [])
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if test "$opal_mpool_memkind_happy" != "yes" -a -n "$with_memkind" ; then
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AC_MSG_ERROR([MEMKIND support requested but not found. Aborting])
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fi
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fi
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AS_IF([test "$opal_mpool_memkind_happy" = "yes"], [$1], [$2])
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# substitute in the things needed to build memkind
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AC_SUBST([mpool_memkind_CPPFLAGS])
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AC_SUBST([mpool_memkind_LDFLAGS])
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AC_SUBST([mpool_memkind_LIBS])
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OPAL_VAR_SCOPE_POP
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])dnl
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103
opal/mca/mpool/memkind/mpool_memkind.h
Обычный файл
103
opal/mca/mpool/memkind/mpool_memkind.h
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/*
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* Copyright (c) 2004-2007 The Trustees of Indiana University and Indiana
|
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* University Research and Technology
|
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* Corporation. All rights reserved.
|
||||
* Copyright (c) 2004-2006 The University of Tennessee and The University
|
||||
* of Tennessee Research Foundation. All rights
|
||||
* reserved.
|
||||
* Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
|
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* University of Stuttgart. All rights reserved.
|
||||
* Copyright (c) 2004-2005 The Regents of the University of California.
|
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* All rights reserved.
|
||||
* Copyright (c) 2007 Sun Microsystems, Inc. All rights reserved.
|
||||
* Copyright (c) 2009 Cisco Systems, Inc. All rights reserved.
|
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* Copyright (c) 2010-2012 Los Alamos National Security, LLC.
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* All rights reserved.
|
||||
* $COPYRIGHT$
|
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*
|
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* Additional copyrights may follow
|
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*
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* $HEADER$
|
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*/
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/**
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* @file
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*/
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#ifndef MCA_MPOOL_MEMKIND_H
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#define MCA_MPOOL_MEMKIND_H
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#include "opal_config.h"
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#include "opal/mca/event/event.h"
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#include "opal/mca/mpool/mpool.h"
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#include "opal/mca/allocator/allocator.h"
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#include "memkind.h"
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BEGIN_C_DECLS
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struct mca_mpool_base_resources_t {
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char *pool_name;
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void *reg_data;
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size_t size;
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};
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static const int mca_mpool_memkind_default_pagesize = 4096;
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typedef struct mca_mpool_base_resources_t mca_mpool_base_resources_t;
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struct mca_mpool_memkind_module_t {
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mca_mpool_base_module_t super;
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size_t alloc_size;
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struct mca_mpool_base_resources_t resources;
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};
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typedef struct mca_mpool_memkind_module_t mca_mpool_memkind_module_t;
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struct mca_mpool_memkind_component_t {
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mca_mpool_base_component_t super;
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int hbw;
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int pagesize;
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int bind;
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memkind_t kind;
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char *memkind_name;
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char *memkind_file;
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int verbose;
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};
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typedef struct mca_mpool_memkind_component_t mca_mpool_memkind_component_t;
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OPAL_MODULE_DECLSPEC extern mca_mpool_memkind_component_t mca_mpool_memkind_component;
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/*
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* Initializes the mpool module.
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*/
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void mca_mpool_memkind_module_init(mca_mpool_memkind_module_t *mpool);
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/**
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* Allocate block of high bandwidth memory.
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*/
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void* mca_mpool_memkind_alloc(
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mca_mpool_base_module_t* mpool,
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size_t size,
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size_t align,
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uint32_t flags,
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mca_mpool_base_registration_t** registration);
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/**
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* realloc function typedef
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*/
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void* mca_mpool_memkind_realloc(
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mca_mpool_base_module_t* mpool,
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void* addr,
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size_t size,
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mca_mpool_base_registration_t** registration);
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/**
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* free function typedef
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*/
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void mca_mpool_memkind_free(
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mca_mpool_base_module_t* mpool,
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void * addr,
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mca_mpool_base_registration_t* registration);
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END_C_DECLS
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#endif
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256
opal/mca/mpool/memkind/mpool_memkind_component.c
Обычный файл
256
opal/mca/mpool/memkind/mpool_memkind_component.c
Обычный файл
@ -0,0 +1,256 @@
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/*
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* Copyright (c) 2004-2010 The Trustees of Indiana University and Indiana
|
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* University Research and Technology
|
||||
* Corporation. All rights reserved.
|
||||
* Copyright (c) 2004-2006 The University of Tennessee and The University
|
||||
* of Tennessee Research Foundation. All rights
|
||||
* reserved.
|
||||
* Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
|
||||
* University of Stuttgart. All rights reserved.
|
||||
* Copyright (c) 2004-2005 The Regents of the University of California.
|
||||
* All rights reserved.
|
||||
* Copyright (c) 2007-2009 Sun Microsystems, Inc. All rights reserved.
|
||||
* Copyright (c) 2008-2009 Cisco Systems, Inc. All rights reserved.
|
||||
* Copyright (c) 2010-2013 Los Alamos National Security, LLC.
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* All rights reserved.
|
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* Copyright (c) 2014 NVIDIA Corporation. All rights reserved.
|
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* $COPYRIGHT$
|
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*
|
||||
* Additional copyrights may follow
|
||||
*
|
||||
* $HEADER$
|
||||
*/
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#include "opal_config.h"
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#ifdef HAVE_UNISTD_H
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#include <unistd.h>
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#endif /* HAVE_UNISTD_H*/
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#ifdef HAVE_STDLIB_H
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#include <stdlib.h>
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#endif /* HAVE_STDLIB_H */
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#include <errno.h>
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#include <memkind.h>
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#include "opal/mca/base/base.h"
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#include "opal/mca/allocator/base/base.h"
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#include "mpool_memkind.h"
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/*
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* Local functions
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*/
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static int
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mca_mpool_memkind_register(void);
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static int
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mca_mpool_memkind_open(void);
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static int
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mca_mpool_memkind_close(void);
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static mca_mpool_base_module_t*
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mca_mpool_memkind_init(struct mca_mpool_base_resources_t* resources);
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mca_mpool_memkind_component_t mca_mpool_memkind_component = {
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{
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/* First, the mca_base_component_t struct containing meta
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information about the component itself */
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{
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MCA_MPOOL_BASE_VERSION_2_0_0,
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"memkind", /* MCA component name */
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OPAL_MAJOR_VERSION, /* MCA component major version */
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OPAL_MINOR_VERSION, /* MCA component minor version */
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OPAL_RELEASE_VERSION, /* MCA component release version */
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mca_mpool_memkind_open, /* component open */
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mca_mpool_memkind_close,
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NULL,
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mca_mpool_memkind_register
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},
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{
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/* The component is checkpoint ready */
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MCA_BASE_METADATA_PARAM_CHECKPOINT
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},
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mca_mpool_memkind_init
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}
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};
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static int opal_mpool_memkind_verbose;
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static int mca_mpool_memkind_register(void)
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{
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char *memkind_names;
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/* register MEMKIND component parameters */
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mca_mpool_memkind_component.hbw = 1;
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mca_mpool_memkind_component.bind = 0;
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mca_mpool_memkind_component.pagesize = mca_mpool_memkind_default_pagesize;
|
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memkind_names = (char *) malloc (2048 * sizeof(char));
|
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if (NULL == memkind_names){
|
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return OPAL_ERROR;
|
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}
|
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|
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mca_mpool_memkind_component.memkind_name = (char *) malloc (4096 * sizeof(char));
|
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if (NULL == mca_mpool_memkind_component.memkind_name){
|
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return OPAL_ERROR;
|
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}
|
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|
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mca_mpool_memkind_component.memkind_file = (char *) malloc (4096 * sizeof(char));
|
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if (NULL ==mca_mpool_memkind_component.memkind_file){
|
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return OPAL_ERROR;
|
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}
|
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strncpy (mca_mpool_memkind_component.memkind_name, "memkind_default", 17);
|
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sprintf(memkind_names, "Use a specific kind of memory from (memkind_default, memkind_hugetlb, memkind_hbw, memkind_hbw_preferred, memkind_hbw_hugetlb, memkind_hbw_preferred_hugetlb, memkind_hbw_gbtlb memkind_hbw_preferred_gbtlb, memkind_gbtlb)");
|
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|
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(void) mca_base_component_var_register(&mca_mpool_memkind_component.super.mpool_version,"high_bandwidth",
|
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"Allocate in high bandwidth node (0-> no, 1 -> yes)",
|
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MCA_BASE_VAR_TYPE_INT, NULL, 0, 0,
|
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OPAL_INFO_LVL_9,
|
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MCA_BASE_VAR_SCOPE_READONLY,
|
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&mca_mpool_memkind_component.hbw);
|
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|
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(void) mca_base_component_var_register(&mca_mpool_memkind_component.super.mpool_version,"page_size",
|
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"Allocate with different page size (4096, 2097152, 1073741824)",
|
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MCA_BASE_VAR_TYPE_INT, NULL, 0, 0,
|
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OPAL_INFO_LVL_9,
|
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MCA_BASE_VAR_SCOPE_READONLY,
|
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&mca_mpool_memkind_component.pagesize);
|
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|
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(void) mca_base_component_var_register(&mca_mpool_memkind_component.super.mpool_version, "bind",
|
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"Bind allocations to specific nodes (0->preferred, 1-> bind)",
|
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MCA_BASE_VAR_TYPE_INT, NULL, 0, 0,
|
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OPAL_INFO_LVL_9,
|
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MCA_BASE_VAR_SCOPE_READONLY,
|
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&mca_mpool_memkind_component.bind);
|
||||
|
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(void) mca_base_component_var_register(&mca_mpool_memkind_component.super.mpool_version,
|
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"verbose", "Enable verbose output for mpool memkind component",
|
||||
MCA_BASE_VAR_TYPE_INT, NULL, 0, 0,
|
||||
OPAL_INFO_LVL_9,
|
||||
MCA_BASE_VAR_SCOPE_READONLY,
|
||||
&opal_mpool_memkind_verbose);
|
||||
|
||||
(void) mca_base_component_var_register(&mca_mpool_memkind_component.super.mpool_version,
|
||||
"name",
|
||||
memkind_names,
|
||||
MCA_BASE_VAR_TYPE_STRING, NULL, 0, 0,
|
||||
OPAL_INFO_LVL_9,
|
||||
MCA_BASE_VAR_SCOPE_READONLY,
|
||||
&mca_mpool_memkind_component.memkind_name);
|
||||
|
||||
(void) mca_base_component_var_register(&mca_mpool_memkind_component.super.mpool_version,
|
||||
"config",
|
||||
"Config file user defined hints",
|
||||
MCA_BASE_VAR_TYPE_STRING, NULL, 0, 0,
|
||||
OPAL_INFO_LVL_9,
|
||||
MCA_BASE_VAR_SCOPE_READONLY,
|
||||
&mca_mpool_memkind_component.memkind_file);
|
||||
|
||||
|
||||
opal_output(mca_mpool_memkind_component.verbose,
|
||||
"mca_mpool_memkind_register: Allocating with hbw: %d, pagesize: %d",
|
||||
mca_mpool_memkind_component.hbw, mca_mpool_memkind_component.pagesize);
|
||||
|
||||
/*Setting the appropriate based on mca parameters
|
||||
default allocates with 4K pages on high bandwidth memory on preferred mode.
|
||||
For more information about the kinds, (refer to the manpage of memkind)
|
||||
www.github.com/memkind
|
||||
*/
|
||||
if (!mca_mpool_memkind_component.hbw) {
|
||||
switch (mca_mpool_memkind_component.pagesize) {
|
||||
case 4096:
|
||||
mca_mpool_memkind_component.kind = MEMKIND_DEFAULT;
|
||||
break;
|
||||
case 2097152:
|
||||
mca_mpool_memkind_component.kind = MEMKIND_HUGETLB;
|
||||
break;
|
||||
case 1073741824:
|
||||
mca_mpool_memkind_component.kind = MEMKIND_GBTLB;
|
||||
break;
|
||||
}
|
||||
}
|
||||
else if (1 == mca_mpool_memkind_component.hbw){
|
||||
switch(mca_mpool_memkind_component.pagesize) {
|
||||
case 4096:
|
||||
mca_mpool_memkind_component.kind = MEMKIND_HBW;
|
||||
break;
|
||||
case 2097152:
|
||||
mca_mpool_memkind_component.kind = MEMKIND_HBW_HUGETLB;
|
||||
break;
|
||||
case 1073741824:
|
||||
mca_mpool_memkind_component.kind = MEMKIND_HBW_GBTLB;
|
||||
break;
|
||||
}
|
||||
}
|
||||
else {
|
||||
switch (mca_mpool_memkind_component.pagesize) {
|
||||
case 4096:
|
||||
mca_mpool_memkind_component.kind = MEMKIND_HBW_PREFERRED;
|
||||
break;
|
||||
case 2097152:
|
||||
mca_mpool_memkind_component.kind = MEMKIND_HBW_PREFERRED_HUGETLB;
|
||||
break;
|
||||
case 1073741824:
|
||||
mca_mpool_memkind_component.kind = MEMKIND_HBW_PREFERRED_GBTLB;
|
||||
break;
|
||||
}
|
||||
}
|
||||
|
||||
if(NULL != memkind_names){
|
||||
free (memkind_names);
|
||||
memkind_names = NULL;
|
||||
}
|
||||
|
||||
return OPAL_SUCCESS;
|
||||
}
|
||||
|
||||
/**
|
||||
* component open/close/init function
|
||||
*/
|
||||
static int mca_mpool_memkind_open(void)
|
||||
{
|
||||
if (opal_mpool_memkind_verbose != 0) {
|
||||
mca_mpool_memkind_component.verbose = opal_output_open(NULL);
|
||||
}
|
||||
else {
|
||||
mca_mpool_memkind_component.verbose = -1;
|
||||
}
|
||||
|
||||
return OPAL_SUCCESS;
|
||||
}
|
||||
|
||||
static int mca_mpool_memkind_close(void)
|
||||
{
|
||||
return OPAL_SUCCESS;
|
||||
}
|
||||
|
||||
static mca_mpool_base_module_t*
|
||||
mca_mpool_memkind_init(struct mca_mpool_base_resources_t* resources)
|
||||
{
|
||||
mca_mpool_memkind_module_t* mpool_module;
|
||||
mca_mpool_base_module_t* ret_val;
|
||||
|
||||
/*Check if the high bandwidth node is available ?*/
|
||||
if (!memkind_check_available(MEMKIND_HBW)) {
|
||||
opal_output(mca_mpool_memkind_component.verbose,
|
||||
"mca_mpool_memkind_init: High bandwidth node not available");
|
||||
ret_val = NULL;
|
||||
}
|
||||
else {
|
||||
mpool_module =
|
||||
(mca_mpool_memkind_module_t*)malloc(sizeof(mca_mpool_memkind_module_t));
|
||||
mca_mpool_memkind_module_init(mpool_module);
|
||||
|
||||
mpool_module->alloc_size = resources->size;
|
||||
opal_output(mca_mpool_memkind_component.verbose,
|
||||
"mca_mpool_memkind_init: allocation size requested: (%ld)",
|
||||
mpool_module->alloc_size);
|
||||
|
||||
ret_val = &mpool_module->super;
|
||||
}
|
||||
|
||||
return ret_val;
|
||||
}
|
||||
83
opal/mca/mpool/memkind/mpool_memkind_module.c
Обычный файл
83
opal/mca/mpool/memkind/mpool_memkind_module.c
Обычный файл
@ -0,0 +1,83 @@
|
||||
/*
|
||||
* Copyright (c) 2004-2011 The Trustees of Indiana University and Indiana
|
||||
* University Research and Technology
|
||||
* Corporation. All rights reserved.
|
||||
* Copyright (c) 2004-2005 The University of Tennessee and The University
|
||||
* of Tennessee Research Foundation. All rights
|
||||
* reserved.
|
||||
* Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
|
||||
* University of Stuttgart. All rights reserved.
|
||||
* Copyright (c) 2004-2005 The Regents of the University of California.
|
||||
* All rights reserved.
|
||||
* Copyright (c) 2009-2012 Cisco Systems, Inc. All rights reserved.
|
||||
* Copyright (c) 2011-2012 Los Alamos National Security, LLC.
|
||||
* All rights reserved.
|
||||
* Copyright (c) 2011-2014 NVIDIA Corporation. All rights reserved.
|
||||
* $COPYRIGHT$
|
||||
*
|
||||
* Additional copyrights may follow
|
||||
*
|
||||
* $HEADER$
|
||||
*/
|
||||
|
||||
#include "opal_config.h"
|
||||
#include <string.h>
|
||||
#include "opal/mca/mpool/memkind/mpool_memkind.h"
|
||||
#ifdef HAVE_UNISTD_H
|
||||
#include <unistd.h>
|
||||
#endif
|
||||
#include "opal/mca/mpool/base/base.h"
|
||||
|
||||
|
||||
|
||||
/*
|
||||
* Initializes the mpool module.
|
||||
*/
|
||||
void mca_mpool_memkind_module_init(mca_mpool_memkind_module_t* mpool)
|
||||
{
|
||||
mpool->super.mpool_component = &mca_mpool_memkind_component.super;
|
||||
mpool->super.mpool_alloc = mca_mpool_memkind_alloc;
|
||||
mpool->super.mpool_realloc = mca_mpool_memkind_realloc;
|
||||
mpool->super.mpool_free = mca_mpool_memkind_free;
|
||||
mpool->super.mpool_find = NULL;
|
||||
mpool->super.mpool_register = NULL;
|
||||
mpool->super.mpool_deregister = NULL;
|
||||
mpool->super.mpool_release_memory = NULL;
|
||||
mpool->super.flags = 0;
|
||||
}
|
||||
|
||||
|
||||
void* mca_mpool_memkind_alloc(
|
||||
mca_mpool_base_module_t* mpool,
|
||||
size_t size,
|
||||
size_t align,
|
||||
uint32_t flags,
|
||||
mca_mpool_base_registration_t** registration)
|
||||
{
|
||||
|
||||
void *addr;
|
||||
|
||||
if(0 == align)
|
||||
align = mca_mpool_base_page_size;
|
||||
|
||||
if ((errno = memkind_posix_memalign(mca_mpool_memkind_component.kind,
|
||||
&addr, align, size))!= 0){
|
||||
return NULL;
|
||||
}
|
||||
return addr;
|
||||
}
|
||||
|
||||
void* mca_mpool_memkind_realloc(mca_mpool_base_module_t *mpool, void *addr,
|
||||
size_t size, mca_mpool_base_registration_t **registration)
|
||||
{
|
||||
return memkind_realloc(mca_mpool_memkind_component.kind,
|
||||
addr, size);
|
||||
|
||||
}
|
||||
|
||||
void mca_mpool_memkind_free(mca_mpool_base_module_t *mpool, void *addr,
|
||||
mca_mpool_base_registration_t *registration)
|
||||
{
|
||||
memkind_free(mca_mpool_memkind_component.kind,
|
||||
addr);
|
||||
}
|
||||
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