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Rolf vandeVaart
95d19af0eb Merge pull request #783 from rolfv/pr/fix-thread-issue 
Refs open-mpi/ompi#627. Fix support for multi-threads with CUDA 7.0
 2015-08-10 11:13:56 -04:00
Rolf vandeVaart
8cc6bef090 Refs open-mpi/ompi#627. Fix support for multi-threads with CUDA 7.0 2015-08-10 10:22:45 -04:00
bosilca
e77ff6b84e Merge pull request #789 from bosilca/topic/treematch_coverity 
Fix treematch issues identified by Coverity.
 2015-08-08 20:59:17 -04:00
George Bosilca
0a91d7af4d Fix issues identified by Coverity. 2015-08-08 16:41:30 -04:00
Howard Pritchard
acf64b20c7 Merge pull request #786 from nrgraham23/add_implements_cloneable 
Add explicit implementation of Cloneable
 2015-08-08 13:02:43 -06:00
Jeff Squyres
bd5bf4a224 Merge pull request #781 from hppritcha/topic/suppress_picky_warning 
mca/topo: suppress picky warning
 2015-08-08 06:14:52 -04:00
Edgar Gabriel
d719497f82 Performance tuning: increase the priority of the sm sharedfp component to ensure that it is selected if it can run. 2015-08-07 16:32:53 -05:00
Edgar Gabriel
8561f5f180 Merge pull request #787 from edgargabriel/pr/adio-lustre-fix 
remove a erroneous parenthesis which prevents the compilation of the …
 2015-08-07 16:18:15 -05:00
Howard Pritchard
8e7e4ca7f4 Merge pull request #780 from hppritcha/topic/plm_alps_minor_cleanup 
plm/alps: remove unneded env. variable setting
 2015-08-07 15:03:45 -06:00
Edgar Gabriel
9e29edf15c remove a erroneous paranthesis which prevents the compilation of the lustre adio 2015-08-07 15:22:41 -05:00
rhc54
d6c5770436 Merge pull request #784 from jsquyres/pr/async-event-base-init 
Update the opal_progress_thread API
 2015-08-07 12:26:43 -07:00
Edgar Gabriel
1293d9c69b free memory correctly in case of an error. Fixes CID 131540 and CID 1315419 2015-08-07 13:30:50 -05:00
Nathaniel Graham
8fcc317a57 Add explicit implementation of Cloneable 
Added Cloneable to the implemented interface list as per
Coverity suggestion.  The required methods were already
implemented, but it was not explicitly stated.  This is
an intent revealing change.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-08-07 12:16:06 -06:00
Edgar Gabriel
0aa3049bfc Performance tuning: change the default behavior of ompio to *not* segment individual read/write operations. 
In most cases, performance seems to be better if not segmented.
 2015-08-07 13:06:39 -05:00
Edgar Gabriel
db5af26de7 Performance tuning. make sure we catch if the user wants to set the default fileview and replace it with our optimized default file view. Otherwise, performance will suffer. file_get_view should still return the correct filetype, not our optimized default file view. This is the correct version compared to ffa67b96933acafb3cfacf39a074d3dc1fe134ae, which unfortunately broke 
some test cases in mpi_test_suite. Thanks for @ggouaillardet for reporting this!
 2015-08-07 12:49:58 -05:00
Jeff Squyres
9e1e563120 event: remove opal_async_event_base 
opal_async_event_base is not used anywhere.  The opal_progress_thread
API should be used instead.
 2015-08-07 10:13:41 -07:00
Jeff Squyres
09f7434491 ORTE: update for the new opal_progress_thread API 2015-08-07 10:13:40 -07:00
Jeff Squyres
d7c25f683e pmix_native: update to the new opal_progress_thread API 2015-08-07 10:13:40 -07:00
Jeff Squyres
99fa054507 opal_progress_threads: update to the API 
There are now four functions and one global constant:

* opal_progress_thread_name: the name of the OPAL-wide async progress
  thread.  If you have general purpose events that you need to run in
  *a* progress thread, but not a *dedicated* progress thread, use this
  name in the functions below to glom your events on to the general
  OPAL-wide async progress thread.
* opal_progress_thread_init(): return an event base corresponding to a
  progress thread of the specified name (a progress thread will be
  created for that name if it does not already exist).
* opal_progress_thread_finalize(): decrement the refcount on the
  passed progress thread name.  If the refcount is 0, stop the thread
  and destroy the event base.
* opal_progress_thread_pause(): stop processing events on the event
  base corresponding to the progress thread name, but do not destroy
  the event base.
* opal_progess_thread_resume(): resume processing events on the event
  base corresponding to a previously-paused progress thread name.
 2015-08-07 10:13:40 -07:00
Edgar Gabriel
6f6c01ee8d free the datatypes that were created using type_dup during file_set_view 2015-08-07 11:50:25 -05:00
Edgar Gabriel
1ae4f8c7e6 Revert "Performance tuning. make sure we catch if the user wants to set the default fileview and replace it with" 
This reverts commit ffa67b96933acafb3cfacf39a074d3dc1fe134ae.
 2015-08-07 09:53:07 -05:00
Gilles Gouaillardet
67fdfdda7d configury: patch generated configure files to fix the libtool.m4 bug 
the bug started with libtool 2.4.3
Fixes open-mpi/ompi#751
 2015-08-07 11:47:32 +09:00
Gilles Gouaillardet
907c095f66 Merge pull request #779 from edgargabriel/topic/fcoll_fixes 
Topic/fcoll fixes
 2015-08-07 09:14:31 +09:00
Jeff Squyres
b5c37dbfe2 CSCuv67889: usnic: fix an error corner case 
Ensure that we have non-NULL on all levels of pointers, which will
save us if there are exitable errors very early during component /
module initialization.
 2015-08-06 10:54:28 -07:00
Jeff Squyres
c9e91ff4fc .gitignore: add man page in CUDA extension 2015-08-06 06:49:33 -07:00
Jeff Squyres
982455aaa4 autogen.pl: ensure to patch *all* Autotools output 
Per open-mpi/ompi#751, ensure to patch up all Autotools output (not
just in some cases).

Also, adjust the patching process to only write our verbose statements
and a new configure script if the content actually changed as result
of the patching.
 2015-08-06 04:38:44 -07:00
Rolf vandeVaart
731cfe3e46 Merge pull request #777 from rolfv/pr/cudaext-build-always 
Build always and fix return value
 2015-08-05 18:13:58 -04:00
Howard Pritchard
10aac8037f mca/topo: suppress picky warning 
When configured with --enable-picky

topo_base_lazy_init.c compiles with a warning:

  CC       base/topo_base_lazy_init.lo
base/topo_base_lazy_init.c:46:67: warning: implicit conversion from enumeration type 'enum mca_base_register_flag_t' to different enumeration type 'mca_base_open_flag_t' (aka 'enum mca_base_open_flag_t') [-Wenum-conversion]
        err = mca_base_framework_open (&ompi_topo_base_framework, MCA_BASE_REGISTER_DEFAULT);

This commit fixes this implicit conversion problem.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-08-05 16:11:04 -06:00
Jeff Squyres
98b5551126 openmpi-nightly-tarball: update libfabric install location 2015-08-05 17:57:07 -04:00
Rolf vandeVaart
cb84a85d17 Build always and fix return value 2015-08-05 17:23:55 -04:00
Howard Pritchard
1b55d14dff plm/alps: remove unneded env. variable setting 
In order to address issue #741, the orted's now are
always launched with the Cray PMI environment variables

PMI_NO_FORK
PMI_NO_PREINITIALIZE

set to disable running of the library's ctor.
So there's no longer a need to set these for the
application(s) being launched by the orted's.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-08-05 13:27:18 -07:00
Edgar Gabriel
16d4171f6b the individual component should call internal ompio functions directly. The reason is that otherwise 
the redirection to the ompi_file_t structure (and back to the ompio internal structure) is ambiguise and wrong
for the shared file pointer scenario.
 2015-08-05 14:31:11 -05:00
Edgar Gabriel
02a4eb2f13 add the ompi_file_t pointer correctly on the ompio file handle for the sm and individual component. 2015-08-05 14:28:27 -05:00
Jeff Squyres
ae0de54f6c Merge pull request #774 from jsquyres/pr/FUNCTION-fixes 
__FUNCTION__ --> __func__ fixes
 2015-08-05 09:59:49 -04:00
Jeff Squyres
5065978a1e oshmem: __FUNCTION__ -> __func__ fixes 2015-08-05 05:39:38 -07:00
Jeff Squyres
a36d7e6026 treematch: __FUNCTION__ -> __func__ fixes 2015-08-05 05:39:38 -07:00
Jeff Squyres
a0ebbee6ef libnbc: __FUNCTION__ -> __func__ fixes 2015-08-05 05:27:23 -07:00
Gilles Gouaillardet
3d1780f1a2 sharedfp: set f_fh when opening a shared file 2015-08-05 15:07:21 +09:00
Nathan Hjelm
6265aaa354 Merge pull request #771 from hjelmn/lifo_fix 
opal/lifo: add missing opal_atomic_wmb and remove unnecessary opal_atomic_rmb
 2015-08-04 14:02:29 -06:00
Nathan Hjelm
6003a4dae1 opal/lifo: add missing opal_atomic_wmb and remove unnecessary opal_atomic_rmb 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-08-04 08:54:06 -06:00
Nathan Hjelm
45a8e8daff Merge pull request #770 from hjelmn/fifo_fix 
opal/fifo: add missing memory barrier
 2015-08-04 08:46:59 -06:00
Nathan Hjelm
9abccbd9fc opal/fifo: add missing memory barrier 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-08-03 16:22:28 -06:00
Howard Pritchard
36d7855280 Merge pull request #763 from nrgraham23/status_x_java_bindings 
Status x java bindings
 2015-08-03 09:26:16 -06:00
Gilles Gouaillardet
2fa8f4d53a Revert "fortran: optimize testall and waitall when MPI_STATUSES_IGNORE is used" 
Optimization was incorrect, so revert this commit.

This reverts commit 83375bcc5c69121ebad7c1df67211ac08729c570.
 2015-08-03 08:45:12 +09:00
rhc54
e6017c802d Merge pull request #768 from rhc54/topic/segfault 
Fix an annoying segfault caused by incorrect indentation in a loop th…
 2015-08-01 11:10:37 -07:00
Ralph Castain
9bc384282a Fix an annoying segfault caused by incorrect indentation in a loop that causes the buffer to not be created prior to packing. 2015-08-01 10:01:47 -07:00
Jeff Squyres
f86a0c9f33 Merge pull request #765 from jsquyres/pr/usnic-libfabric-11-configury-update 
usnic libfabric 1.1 configury update
 2015-07-31 21:54:10 -04:00
Jeff Squyres
cbcd16b399 usnic: remove a stale shell variable name 2015-07-31 18:53:54 -07:00
Jeff Squyres
0ee8295e6e usnic: ensure that we have libfabric >= v1.1 2015-07-31 18:53:54 -07:00
Howard Pritchard
e4f1de3d3a Merge pull request #767 from hppritcha/topic/lanl_platform 
contrib/lanl: update Makefile
 2015-07-31 16:25:48 -06:00