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Ralph Castain
95ae0d1df3 Cleanup timing macros for portability across compilers. Rename the --enable-timing configure option to be --enable-pmix-timing so it doesn't pickup external timing requests. Remove a stale function reference in PMIx so it can compile with timing enabled. 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-10 12:56:38 +06:00
Boris Karasev
36a0e71f2d ompi/timings: preparing to production state 
Adds:
- enabling/disabling of timings throught environment variable `OMPI_TIMING_ENABLE`
- output format: [file name]:[function name]:[description]: avg/min/max
- dynamically extending array of results for case then inited size was exhausted
- catch and collect errors
- cleanup

Note:
For use feature need to configure with `--enable-timings`
and set env `OMPI_TIMING_ENABLE = 1`

Signed-off-by: Boris Karasev <karasev.b@gmail.com>
 2017-04-07 21:16:57 +06:00
Artem Polyakov
e3acf2a339 ompi/timings: add OMPI-level timing framework. 
This is an extension of OPAL timing framework that allows to use
MPI_reduce to provide the compact representation of the collected
timings throughout the whole application.

NOTE: the functionality is disabled now, it will be enabled after
the runtime verification.

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2017-04-07 21:16:22 +06:00
Artem Polyakov
45898a9c65 opal/timing: add the draft of env-based timings 
This commit adds new timing feature that uses environment variables to
expose timing information. This allows easy access to this data (if
timing is enabled) from any other part of the application for the subsequent
postprocessing.
In particular this will be integrated with OMPI-level timing framework that
whill use MPI_Reduce functionality to provide more compact and easy-to use
information.

This commit also adds the example of usage of this framework by annotating
rte_init function. The result is not used anywhere for now. It will be
postprocessed in subsequent commits.

NOTE: that functionality is currently disabled untill it will be verified at runtime

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2017-04-07 21:16:22 +06:00
Artem Polyakov
88ed79ea25 opal/timing: remove old framework 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2017-04-07 21:16:22 +06:00
Artem Polyakov
1063c0d567 opal/timing: remove timings from MPI_Init and MPI_Finalize 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2017-04-07 21:16:21 +06:00
Artem Polyakov
482d7c9322 opal/timing: remove RML timings 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2017-04-07 21:16:21 +06:00
Artem Polyakov
79100de014 opal/timing: Remove oob tracing 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2017-04-07 21:16:21 +06:00
Ralph Castain
eba6c6b827 Merge pull request #3301 from rhc54/topic/faults 
Correctly identify the source of the event when notifying of abnormal termination by a proces
 2017-04-06 21:43:34 -07:00
Ralph Castain
b526bca56c Fix a potential segfault by avoiding NULL topologies prior to launching the VM. 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-06 20:51:19 -07:00
Ralph Castain
b33b4607df Correctly identify the source of the event when notifying of abnormal termination by a process 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-06 20:50:38 -07:00
Ralph Castain
666386fc19 Merge pull request #3294 from rhc54/topic/modx 
Enable SLURM on Cray with constraints and fix bug in nidmap
 2017-04-06 09:55:07 -07:00
Ralph Castain
a29ca2bb0d Enable slurm operations on Cray with constraints 
Cleanup some errors in the nidmap code that caused us to send unnecessary topologies

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-06 08:58:06 -07:00
Brian Barrett
d7f283cbce README: Update supported platform list 
Per discussion at last developer's forum, platforms
not actively being tested (either in Jenkins or
at least weekly in MTT) are not eligible to be listed
as supported platforms.  Move a number of systems out
of the supported list.

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
 2017-04-05 17:25:01 -07:00
Ralph Castain
bf668ad1e9 Merge pull request #3287 from rhc54/topic/ht 
Provide further (hopefully) helpful messages about the hotel size
 2017-04-05 07:26:03 -07:00
Ralph Castain
db8943cedd Provide further (hopefully) helpful messages about the hotel size 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-05 04:27:32 -07:00
Ralph Castain
840d6c9a1d Merge pull request #3284 from rhc54/topic/hotel 
Resolve the direct modex race condition.
 2017-04-05 03:09:27 -07:00
Gilles Gouaillardet
8d1369db49 Merge pull request #3283 from ggouaillardet/topic/nvml 
build nvml support only with CUDA support
 2017-04-05 16:14:23 +09:00
Ralph Castain
b7e9711f45 Resolve the direct modex race condition. The request hotel was running out of rooms, thereby returning an error upon checkin - and we had missed error_logging a couple of those places. Hence no error message and things just hung. 
Output a (hopefully) helpful message when we timeout an operation

Thanks to Nathan for tracking it down.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-04 21:32:44 -07:00
Ralph Castain
9a69b20d09 Merge pull request #3282 from rhc54/topic/direct 
Set the PARENT vpid for direct routed module
 2017-04-04 20:55:12 -07:00
Gilles Gouaillardet
10ea991d0a hwloc: add CUDA include dir to CPPFLAGS 
so hwloc configury can find nvml.h when CUDA support is built

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-04-05 11:46:22 +09:00
Gilles Gouaillardet
8d7541f766 hwloc: disable nvml is CUDA support is not built in Open MPI 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-04-05 11:07:34 +09:00
Ralph Castain
9132bb26fe Merge pull request #3281 from rhc54/topic/dmx 
Adjust the timeout for direct modex requests to reflect the size of t…
 2017-04-04 19:04:33 -07:00
Ralph Castain
40ca43e157 Set the PARENT vpid for direct routed module 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-04 19:03:28 -07:00
Ralph Castain
734b90aa6b Adjust the timeout for direct modex requests to reflect the size of the job. It can take several seconds to start all the procs, and we don't want to timeout due to differences in start times of the various procs 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-04 18:20:51 -07:00
Ralph Castain
9cb18b8348 Merge pull request #3280 from rhc54/topic/dvm 
Fix the DVM by ensuring that all nodes, even those that didn't partic…
 2017-04-04 18:15:33 -07:00
Ralph Castain
74863a0ea4 Fix the DVM by ensuring that all nodes, even those that didn't participate (i.e., didn't have any local children) in a job, clean up all resources associated with that job upon its completion. With the advent of backend distributed mapping, nodes that weren't part of the job would still allocate resources on other nodes - and then start from that point when mapping the next job. This change ensures that all daemons start from the same point each time. 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-04 17:31:38 -07:00
Aurelien Bouteiller
308d33dca7 Merge pull request #3266 from abouteiller/bugfix/f90mpiext 
Fix the top_ompi_srcdir in Fortran mpiext building system
 2017-04-04 16:25:30 -04:00
Nathaniel Graham
7063f3021f Merge pull request #3231 from nrgraham23/revamp_mpirun_help 
mpirun --help output revamp
 2017-04-04 12:32:20 -06:00
Nathaniel Graham
19e5d15491 mpirun --help output revamp 
This commit modifies the output from the mpirun --help
command.  The options have been split into groups, to
make the output smaller and more readable.  The groups
are: general, debug, output, input, mapping, ranking,
binding, devel, compatibility, launch, dvm, and
unsupported. There is also a special "full" command
that can be used to get the old behaviour of printing
out all of the options.  Unsupported options may only
be seen with this full output.

This commit also adds a special case for the help
argument.  It makes it possible for the user to
enter 0 or 1 arguments instead of having to always
enter an argument.  This defaults to printing out
the "general" help options so the user can then
see what help arguments there are.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2017-04-04 10:59:32 -06:00
Ralph Castain
a605bd4265 Merge pull request #3278 from rhc54/topic/tm 
Remove stale code line
 2017-04-04 09:04:52 -07:00
Ralph Castain
393c4536eb Remove stale code line 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-04 08:13:15 -07:00
Nathan Hjelm
1322e5dee8 Merge pull request #3274 from hjelmn/osc_rdma_fix 
osc/rdma: fix typo in atomic code
 2017-04-04 00:20:42 -06:00
Gilles Gouaillardet
5dfd4ab6ca coll/tuned: remove set-but-not-used variables 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-04-04 13:18:11 +09:00
Ralph Castain
fe64144892 Merge pull request #3259 from rhc54/topic/launch 
Update how we pass the node regex so we pass _all_ nodes, even those without daemons.
 2017-04-03 20:40:48 -07:00
Ralph Castain
92c996487c Update how we pass the node regex so we pass _all_ nodes, even those without daemons. This allows the backend daemons to form a complete picture of the allocation. Include info on which nodes have daemons on them, and populate that info on the backend as well. 
Set the daemons' state to "running" and mark them as "alive" by default when constructing the nidmap

Get the DVM running again

Fix direct modex by eliminating race condition caused by releasing data while sending it

Up the size limit before compressing

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-03 19:25:15 -07:00
Nathan Hjelm
fad0803920 osc/rdma: fix typo in atomic code 
Fixes #3267

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2017-04-03 15:54:28 -06:00
Ralph Castain
9850832dbd Merge pull request #3273 from rhc54/topic/pmix2.0 
Update to PMIx v2.0alpha
 2017-04-03 11:07:08 -07:00
Aurélien Bouteiller
6ef6a3fb18 Fix the Fortran mpiext building system 
Signed-off-by: Aurélien Bouteiller <bouteill@icl.utk.edu>
 2017-04-03 13:46:32 -04:00
Ralph Castain
2cc5fea8be Update to PMIx v2.0alpha 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-04-03 10:02:29 -07:00
Yossi
b3736701c4 Merge pull request #3239 from xinzhao3/topic/ucx-num-eps 
Passing estimated_num_procs to UCX init in PML and SPML.
 2017-04-03 18:31:27 +03:00
Ralph Castain
5f6ba81f11 Merge pull request #3263 from ggouaillardet/topic/hwloc1116 
hwloc: update hwloc to 1.11.6
 2017-03-31 08:03:04 -07:00
Gilles Gouaillardet
81062b7cd2 hwloc: update hwloc to 1.11.6 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-03-31 13:35:16 +09:00
Jeff Squyres
7e57075f0d Merge pull request #3248 from jsquyres/pr/remove-macosx-pkg-support 
dist: remove OS X package script
 2017-03-29 18:46:14 -04:00
Jeff Squyres
f0a8a0af51 dist: remove OS X package script 
We stopped supporting this long ago.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2017-03-29 10:13:01 -04:00
Jeff Squyres
f980cba6b3 Merge pull request #3249 from rhc54/topic/abort 
Use the correct callback data - the callback function was expecting a…
 2017-03-28 20:54:39 -04:00
Jeff Squyres
c7c13253ea Merge pull request #3250 from jsquyres/pr/modulefile-in-srpm 
openmpi.spec: also put the modulefile in /opt if install_in_opt==1
 2017-03-28 20:46:26 -04:00
Kevin Buckley
9e23c5e3f6 openmpi.spec: also put the modulefile in /opt if install_in_opt==1 
Thanks to Kevin Buckley for noticing the issue and supplying the
patch.

[skip ci]
bot:notest

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2017-03-28 20:45:09 -04:00
Ralph Castain
7dd34d0c9a Use the correct callback data - the callback function was expecting a bool*, not a pmix_ptl_sr_t*. 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-03-28 17:21:47 -07:00
Xin Zhao
ee952fcccd Passing estimated_num_procs to UCX init in PML and SPML. 
Signed-off-by: Xin Zhao <xinz@mellanox.com>
 2017-03-27 20:36:52 +03:00