ports/openmpi
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Gilles Gouaillardet
8fd1c3f0df opal/util: handle a race condition in opal_os_dirpath_destroy 
An file might have been destroyed by an other task between
readdir() and stat(), so simply ignore stat() failure.

That typically occurs when one task is removing the job_session_dir
and an other task is still removing its proc_session_dir.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-24 10:45:48 +09:00
Gilles Gouaillardet
1a279c4ee9 btl/self: fix fragment segment length in mca_btl_self_prepare_src() 
opal_convertor_pack() might pack less bytes than requested,
so always set frag->segments[0].seg_len.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-24 10:44:56 +09:00
Artem Polyakov
c660b9b445 Merge pull request #2401 from artpol84/lazy_wait_fix 
ompi/init: always lazy-wait in ompi_mpi_init
 2016-11-23 08:53:02 -08:00
Yossi
6c1025d8f3 Merge pull request #2445 from alex-mikheev/topic/memheap_find_offset_fix 
oshmem: memheap: removes find_offset
 2016-11-23 15:05:47 +02:00
Ralph Castain
1e2019ce2a Revert "Update to sync with OMPI master and cleanup to build" 
This reverts commit cb55c88a8b.
 2016-11-22 15:03:20 -08:00
Ralph Castain
cb55c88a8b Update to sync with OMPI master and cleanup to build 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-11-22 14:24:54 -08:00
Ralph Castain
0c8359b0b9 Avoid adding blank lines when purging tabs 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-11-22 09:38:37 -08:00
Howard Pritchard
2bb4cffffd Merge pull request #2447 from hppritcha/topic/compiler_warning_swats 
btl/ugni:vader swat some compiler warnings
 2016-11-22 05:28:20 -07:00
Howard Pritchard
7b3b3b1499 Merge pull request #2446 from hppritcha/topic/cray_pmix_dlopen_error 
pmix/cray: fix disable-dlopen problem
 2016-11-21 14:53:28 -07:00
Howard Pritchard
09f47fcf8e btl/ugni:vader swat some compiler warnings 
Swat some compiler warnings.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2016-11-21 14:58:34 -06:00
Howard Pritchard
2cbc0e8472 pmix/cray: fix disable-dlopen problem 
PR open-mpi/ompi#2432 introduced a regression where configure
and build with --disable-dlopn caused build failure owing
to unresolved alps lli symbols in the libopal-pal shared library.

This commit fixes this problem.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2016-11-21 13:45:10 -06:00
Alex Mikheev
d1723355d3
oshmem: memheap: removes find_offset 
Reasons for removal are:
- the function is only used by the shmem_lock code
- only a subset of the function is used by the shmem_lock
- for the general case the function is not correct

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-21 16:09:17 +02:00
Howard Pritchard
0bbb319246 Merge pull request #2444 from hppritcha/topic/cray_pmix_ws_cleanup 
pmix/cray: whitespace cleanup
 2016-11-21 06:03:56 -07:00
Gilles Gouaillardet
2c94a3a6f3 coll/libnbc: fix race condition with multi threaded apps 
protect the mca_coll_libnbc_component.active_requests list with
the new mca_coll_libnbc_component.lock mutex.

Thanks Jie Hu for the report

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-21 10:21:47 +09:00
Gilles Gouaillardet
19bdd1d626 oshmem/memheap: initialize common symbol mca_memheap_base_map 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-21 09:32:27 +09:00
Ralph Castain
8ecb240955 Use quiet print for debug 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-11-19 11:47:27 -08:00
Ralph Castain
14b4698890 Fix executable mode 2016-11-19 11:44:19 -08:00
Ralph Castain
fb644abd1e Add a couple of helper tools to prepare git commits by removing all trailing blank lines, and replacing tabs with indents. These tools default to looking only at modified files, but can also be used to scan the entire directory tree via the --all option. 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-11-19 11:44:19 -08:00
Howard Pritchard
3da7f02724 Merge pull request #2435 from jijo733/error-correction 
error correction to the MPI_file operations thread safety lock
 2016-11-19 09:24:48 -07:00
rhc54
4cf1c444cb Merge pull request #2440 from rhc54/topic/ofi 
Update OFI/rml component - still .opal_ignore'd
 2016-11-18 19:37:23 -07:00
Howard Pritchard
08dce4f161 pmix/cray: whitespace cleanup 
Get rid of tabs.  This is anti-ompi style.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2016-11-18 19:30:40 -07:00
Ralph Castain
eb67c2fd44 Update OFI/rml component - still .opal_ignore'd 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-11-18 14:54:26 -08:00
rhc54
ae6884804e Merge pull request #2438 from rhc54/topic/dbgr 
Bring the v2.0.x debugger patch up to the master branch
 2016-11-18 15:42:46 -07:00
Howard Pritchard
44f4663d0d Merge pull request #2432 from hppritcha/topic/fix_info_etc_w_alps 
pmix/cray: set some envars for MPI_INFO_ENV object
 2016-11-18 14:23:53 -07:00
Ralph Castain
9c6c2fa61d Bring the v2.0.x debugger patch up to the master branch 
Ensure the personality gets set as specified by user, or defaults to
"ompi"

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-11-18 12:45:45 -08:00
Jijo Varghese
25e138ea1d error correction to the MPI_file operations thread safety lock 
Signed-off-by: Jijo Varghese <jijo733@gmail.com>
 2016-11-17 08:18:49 -05:00
Howard Pritchard
de3de131af pmix/cray: set some envars for MPI_INFO_ENV object 
Enhance the cray pmix component to set some OMPI internal
env. variables used to set some key/value pairs
on the MPI_INFO_ENV object.  This allows more of the
ompi-tests ibm unit tests to pass when using aprun/srun
direct launch and Cray PMI.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2016-11-16 17:37:52 -06:00
Joshua Ladd
184148d26a Merge pull request #2431 from jladd-mlnx/topic/add_devie_cx5 
Add the ConnectX-5 device ID to openib BTL.
 2016-11-16 17:30:55 -05:00
Joshua Ladd
4907085c6f Add the ConnectX-5 device ID to openib BTL. 
Signed-off-by: Joshua Ladd <jladd.mlnx@gmail.com>
 2016-11-16 21:42:37 +02:00
Gilles Gouaillardet
bd364d29f7 osc/sm: plug an other memory leak in ompi_osc_sm_free 
Fixes open-mpi/ompi@f1b473ee63

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-14 23:19:07 -07:00
Gilles Gouaillardet
f1b473ee63 osc/sm: plug a memory leak in ompi_osc_sm_free 
Thanks Joseph Schuchart for the report.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-14 22:22:43 -07:00
Gilles Gouaillardet
8ef538adeb Merge pull request #2398 from bosilca/topic/tcp_endpoints_mutex 
Protect the tcp_endpoints list from concurrent accesses.
 2016-11-14 22:13:29 -07:00
Joshua Ladd
9a79da729f Merge pull request #2354 from alex-mikheev/topic/oshmem_mkey_cache 
ikrit spml cleanup, mkey cache and assorted bug fixes
 2016-11-14 17:22:13 -05:00
Josh Hursey
bcc8230501 Merge pull request #2410 from jjhursey/topic/fix-dist-graph-coll 
topo/base: Fix module reference in collective call
 2016-11-14 14:29:00 -06:00
Howard Pritchard
fb5ccd3618 Merge pull request #2404 from osvegis/topic/java_paper 
Update java paper reference.
 2016-11-14 11:35:45 -07:00
Joshua Hursey
5a8b2f7431 topo/base: Fix module reference in collective call 
Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
 2016-11-14 11:34:54 -06:00
Jeff Squyres
8d2c98e616 Merge pull request #2408 from hppritcha/manpage_typo 
fix minor typo in MPI_Comm_connect man page
 2016-11-14 09:38:38 -07:00
Howard Pritchard
3923bf8151 fix minor type in MPI_Comm_connect man page 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2016-11-14 05:52:45 -07:00
Gilles Gouaillardet
fc776e3fa5 coll: code cleanup 
- instead of coll_base_comm_get_reqs(2) for irecv/isend, use only
   one request allocated in the stack and do a irecv/send

 - instead of ompi_request_wait_all(2), simpy ompi_request_wait

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-13 22:35:33 -07:00
Gilles Gouaillardet
99d30353af coll: Don't allocate space for zero requests 
Refs #2402

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-13 22:20:58 -07:00
Oscar Vega-Gisbert
891272f556 Update java paper reference. 
Signed-off-by: Oscar Vega-Gisbert
 2016-11-13 22:05:18 +01:00
George Bosilca
725277bc26 Don't allocate space for the requests if the 
underlying topology has no neighbors.

This commit fixes issue #2402.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
 2016-11-12 18:01:09 -05:00
Howard Pritchard
aaf95c0713 Merge pull request #2403 from hppritcha/topic/fix_pmix_typoe 
pmix: fix a typo in a help file
 2016-11-12 14:14:28 -07:00
Howard Pritchard
703b464c03 pmix: fix a typo in a help file 
Fixes #2391

Thanks to @njoly for reporting

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2016-11-12 11:49:15 -07:00
Artem Polyakov
06a73da5ea ompi/init: always lazy-wait in ompi_mpi_init 
According to discussion in #2181 we don't need MCA
parameter any more.

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2016-11-12 07:54:48 +07:00
George Bosilca
d0dddef53d
Protect the tcp_endpoints list from concurrent accesses. 
Thanks Gilles for your help.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
 2016-11-11 00:06:03 -05:00
Alex Mikheev
864904e8ab
oshmem: ucx: check status only if configured --with-oshmem-param-check 
Current standard says that behaviour in the case of error is undefined

Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-10 11:29:03 +02:00
Alex Mikheev
48a7a0bbb9
oshmem: lock: call opal_progress only when busy waiting 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-10 11:27:24 +02:00
Alex Mikheev
bf61961f8b
oshmem: code review fixes 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-08 15:11:59 +02:00
Alex Mikheev
f133d9b6c8
oshmem: fixes comiplation errors in sshmem 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2016-11-08 15:11:07 +02:00