1
1
Граф коммитов

21058 Коммитов

Автор SHA1 Сообщение Дата
Gilles Gouaillardet
8eb2d62919 coll/sm: fix an other memory leak 2014-10-10 19:54:45 +09:00
Gilles Gouaillardet
5d44a30111 coll/sm: fix minor memory leaks
port 4488.1.patch attached in #196 to master
2014-10-10 14:21:34 +09:00
Ralph Castain
4fc4a8346b Fix a couple of minor issues. Ensure usock isn't used if the session dirs aren't setup. Protect an oddball case where orte_xml_fp is NULL. 2014-10-09 20:58:46 -07:00
Nathan Hjelm
169a1866b8 Modify Cray PMI check to detect PMI on older systems 2014-10-09 17:01:31 -06:00
Ralph Castain
b1a58726ac Cleanup the PMI m4 syntax with respect to -a, and look for libpmi* so we can pickup both .a, .la, and whatever other extensions that particular system might use. 2014-10-09 14:04:43 -07:00
Nathan Hjelm
a31cf3b740 btl/vader: missing include 2014-10-09 13:57:21 -06:00
Nathan Hjelm
9e0c07e4ce btl/ugni: improve the handling of eager get fragments when the btl runs out
of preregistered buffers

Before this change eager gets we retried on each progress loop. This commit
modifies the protocol to only retry eager gets when another eager get has
completed. This commit also cleans up some callback code that is no longer
needed.
2014-10-09 13:57:21 -06:00
Howard Pritchard
ebc368d26b remove GNI_RDMAMODE_FENCE bit in GNI_PostRdma
The GNI_RDMAMODE_FENCE bit was a left over from
async progress work that is not needed at this point
in the gni BTL.  Removing the bit also allows
for the removal of the GNI_CDM_MODE_BTE_SINGLE_CHANNEL
bit from the GNI_CdmCreate call.
2014-10-09 12:41:19 -06:00
Ralph Castain
ce8e33447f Silence warning 2014-10-09 10:45:25 -07:00
Joshua Ladd
1cabd73522 Adding a new OPAL hash table routine. Please read the algorithm description in opal/class/opal_hash_table.c for more precise details on the design and implementation. This algorithm was contributed by David Linden of H.P. in partnership with Mellanox Technologies. This contribution achieves two objectives:
1. It's actually hashing now, whereas the old OPAL hash table was not. Thus, it is a bug fix for and, as such, should be included in the 1.8 series.

2. It is dynamic and can grow and shrink the number of buckets in accordance with job size, whereas the old OPAL hash table had a fixed number of buckets which resulted in poor retrieval performance at large scale.

This scheme has been deployed in the field on very large H.P./Mellanox systems and has been demonstrated to significantly decrease job start-up time (~ 20% improvement) when launching applications directly with srun in SLURM environments. However, neither SLURM nor direct launch are prerequisites to take advantage of this change as any entity that utilizes OPAL hash table objects can benefit (at least partially) from this contribution.
2014-10-09 17:24:23 +02:00
Nadezhda Kogteva
ffa8674e01 Fix bugs in PMI configure: set correct include path, fix test command with multiple conditions. 2014-10-09 17:23:56 +03:00
Elena
b937b31693 fix for multiple spawn test 2014-10-09 06:18:16 +02:00
Elena
3d65799236 pmix: fixed ugly bug which caused many strange hangs 2014-10-09 06:17:03 +02:00
Elena
c905fe9b78 pmix: removed pmix_base_direct modex mca parameter, renamed orte_full_modex_cutoff and ompi_hostname_cutoff to direct_modex_cutoff 2014-10-09 06:15:31 +02:00
Elena
e319c95267 fixes for grpcomm rcd/brucks algorithms 2014-10-09 06:12:26 +02:00
Howard Pritchard
9947758d98 initial thread safety for ugni btl
This commit adds initial ugni thread safety support.
With this commit, sun thread tests (excepting MPI-2 RMA)
pass with various process counts and threads/process.
Also osu_latency_mt passes.
2014-10-08 10:13:22 -06:00
Mike Dubman
81917412a8 tools: add flag to avoid git pull during tarball create
it breaks jenkins scripts because jenkins fetches the branch and disconnects it from the repo.
hence git pull fails
2014-10-08 12:16:08 +03:00
Nathan Hjelm
23cb00d7d5 Merge pull request #225 from hjelmn/master
osc/rdma: fix issue identified by Berk Hess
2014-10-07 12:04:40 -06:00
Nathan Hjelm
eed7b45db5 osc/rdma: fix issue identified by Berk Hess
osc/rdma uses counters to determine if all messages have been received
before exiting synchronization calls. The problem is that the active
target counter is always increasing (never zeroed). If over 2^31-1
messages are sent this causes the counter to overflow (in itself this
isn't an error). This causes test/wait to return before the communication
is complete. There is an additional error in the use of the fragment
flush function. If PSCW synchronization is in use this function CAN NOT
be called unless a post message has arrived.

Relevant mailing list thread: http://www.open-mpi.org/community/lists/devel/2014/10/16016.php

This commit fixes both issues. Tested against MTT and issue reproducer.

Closes #224.
2014-10-07 11:45:22 -06:00
Ralph Castain
9c027e6def Update the PMI configure logic to handle the oddball case where both lib and lib64 may exist, and the required files may be in one or the other of them. 2014-10-07 10:20:46 -07:00
Jeff Squyres
a422d893b8 memchecker: per RFC, use calloc for OBJ_NEW
With --enable-memchecker builds, use calloc(3) for OBJ_NEW instead of
malloc(3).  This cuts down on a lot of valgrind/memory checker false
positive output.

Also make a minor change in the valgrind configure.m4; have it assign
0xf to a char.  The prior assignment (of 0xff) was warning about an
overflow.  This didn't really matter, but we might as well make the
test not have a gratuitious warning in it.
2014-10-07 09:55:54 -07:00
Mike Dubman
86f1d5af3e OPAL: drop dead with core on bad flow. rarely happens with helloworld on large scale. 2014-10-07 14:07:41 +03:00
Jeff Squyres
cd48fbeec6 Merge pull request #221 from opoplawski/master
Fix typo in liboshmem name
2014-10-06 09:17:44 -04:00
Alex Mikheev
89535a3272 OSHMEM: sshmem mmap: use MAP_PRIVATE instead of MAP_SHARED
It looks like using MAP_PRIVATE instead of MAP_SHARED greatly
speeds up infiniband memory registration.

Change-Id: Id7089f58458ef8fff4034a2c4707d31f7e8b6694
2014-10-06 11:41:06 +03:00
Gilles Gouaillardet
399fc1bb3e configury: remove unneeded assignments 2014-10-06 16:36:03 +09:00
Mike Dubman
fd77ebd452 OSHMEM: sshmem verbs: allocate memory at fixed address
Use experimental verbs to allocate memory at fixed base
virtual address.

verbs will disqualify itself if shared_mr is disabled
or not supported and it is impossible to allocate memory
starting at fixed base virtual address.

verbs contig pages allocator did not guarantee fixed va, now it does.
2014-10-05 14:33:56 +03:00
Alex Mikheev
4ac5936257 OSHMEM: sshmem verbs: improve hca name parsing
If user gives hca port ignore port, use only hca name.
Ex: mlx4_0:1 -> mlx4_0

fixed by @alex-mikheev reviewed by @miked-mellanox
2014-10-05 14:29:11 +03:00
Igor Ivanov
d82dc7f67f OSHMEM: Add two new mca variables
Added use_hp flag in sshmem/sysv variable to control huge page usage;
Added shared_mr sshmem/verbs;
Both paraemetes are set in auto.
Fix help messages

fixed by Igor, reviewed by @miked-mellanox and @alex-mikheev
2014-10-05 14:25:39 +03:00
Alex Mikheev
067fa05209 OSHMEM: fixes bug in shmem_lock
Lock server pe computation was incorrect in cases when:

lock virtual address is signed long. In this case negative pe
value was returned.

In case when lock has different virtual adresses on different pes.
It can happen when memheap or static segment have different base
addresses. Use offset instead of absolute virtual address to
compute server pe

Fixed by @alex-mikheev, reviewed by @miked-mellanox
2014-10-05 09:31:03 +03:00
Howard Pritchard
93eba3ac70 Merge branch 'master' of https://github.com/open-mpi/ompi 2014-10-03 16:08:11 -06:00
Ralph Castain
fd6a044b7f Cleanup some cruft resulting from the move of the btl's to opal. We had created the ability to delay modex operations, which included a need to delay retrieving hostname info for remote procs. This allowed us to not retrieve the modex info until first message unless required - the hostname is generally only required for debug and error messages.
Properly setup the opal_process_info structure early in the initialization procedure. Define the local hostname right at the beginning of opal_init so all parts of opal can use it. Overlay that during orte_init as the user may choose to remove fqdn and strip prefixes during that time. Setup the job_session_dir and other such info immediately when it becomes available during orte_init.
2014-10-03 16:02:57 -06:00
Jeff Squyres
b44a244fbc openmpi-release.sh: update for git
Also add consistent indenting to make the loop easier to read.
2014-10-03 16:02:57 -06:00
Orion Poplawski
2d5832ccc4 Fix typo in liboshmem name 2014-10-03 15:36:37 -06:00
Ralph Castain
bd2974f239 Merge branch 'master' of ssh://github.com/open-mpi/ompi 2014-10-03 14:23:25 -07:00
Ralph Castain
fb1f487d85 Cleanup some cruft resulting from the move of the btl's to opal. We had created the ability to delay modex operations, which included a need to delay retrieving hostname info for remote procs. This allowed us to not retrieve the modex info until first message unless required - the hostname is generally only required for debug and error messages.
Properly setup the opal_process_info structure early in the initialization procedure. Define the local hostname right at the beginning of opal_init so all parts of opal can use it. Overlay that during orte_init as the user may choose to remove fqdn and strip prefixes during that time. Setup the job_session_dir and other such info immediately when it becomes available during orte_init.
2014-10-03 14:19:48 -07:00
Jeff Squyres
0997c91a6a openmpi-release.sh: update for git
Also add consistent indenting to make the loop easier to read.
2014-10-03 17:04:18 -04:00
Howard Pritchard
5428301c81 Remove catamount timer support
With the 1.9 release, support for catamount is being
dropped. Hence,  removing catamount timer support.
2014-10-03 14:53:09 -06:00
Howard Pritchard
d2bb8d8829 remove alps ess component
The alps ess component is obsolete.  It relies on header
files only present in very old CLE (Cray Linux)  3.X for
the Cray XT series.  As support for these systems is being
dropped starting with release 1.9, this code is being removed.
2014-10-03 13:17:33 -06:00
Jeff Squyres
d0336745f4 openmpi-nightly-tarball.sh: don't even check v1.6 any more
The create_tarball.sh in v1.6 assumes SVN.  So let's not check that
any more...
2014-10-03 11:16:30 -07:00
Jeff Squyres
534d773a9a openmpi-nightly-tarball.sh: fix typo in ompi-release URLs
Fix copy-n-paste error: had the ompi URLs instead of the ompi-release
URLs.
2014-10-03 10:20:58 -07:00
Jeff Squyres
0e21c66fd4 openmpi-nightly-tarball.sh: fix typo 2014-10-03 09:01:02 -07:00
Jeff Squyres
f72bf3b3c3 gkcommit.pl: so long gkcommit; you served us well in SVN days... 2014-10-03 08:53:23 -07:00
Jeff Squyres
a12eef6ecf find-copyrights.pl: updates for git
And minor whitespace cleanup.
2014-10-03 08:52:48 -07:00
Jeff Squyres
58e6213d2f make_dist_tarball: remove debug statement
Remove the default to only build a "no OMPI" tarball when invoked via
"make_tarball".
2014-10-03 08:32:29 -07:00
Jeff Squyres
72d13598d7 create_tarball.sh: update the email to remove SVN references 2014-10-03 08:14:46 -07:00
Jeff Squyres
8cd3ee7afc create_tarball.sh: adjust for new VERSION file format
Also fix minor typos in comments, and remove unnecessary --enable-dist
option.
2014-10-03 07:29:56 -07:00
rolfv
697b18db63 Making async copy the default 2014-10-03 06:42:18 -07:00
Gilles Gouaillardet
54c839a970 Merge branch 'topic/fix-pmix-native-getattr' 2014-10-03 11:57:33 +09:00
Gilles Gouaillardet
5c5453b8b1 pmix: fix test in native_get_attr 2014-10-03 11:54:08 +09:00
Jeff Squyres
dee6b63b5e .gitignore: this file is no longer automatically generated 2014-10-02 15:45:21 -07:00