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Hadi Montakhabi
8c14411289 f_cc_size is contiguous chunk size, not the stripe width. There is no stripe_width in the file handle structure.
This commit was SVN r30314.
2014-01-17 18:35:55 +00:00
Mike Dubman
2af0f878bc remove bml_init call, called from btl add_proc.
Refs trac:3763

This commit was SVN r30310.

The following Trac tickets were found above:
  Ticket 3763 --> https://svn.open-mpi.org/trac/ompi/ticket/3763
2014-01-17 16:52:20 +00:00
Mike Dubman
b7750ccbf4 OSHMEM: bml initialization is moved into ompi_init
it fixes race of mca_var segfault in finalization of shmem

based on this thread:
http://www.open-mpi.org/community/lists/devel/2014/01/13778.php

Refs trac:3763

fixed by Igor, reviewed by Brian

This commit was SVN r30304.

The following Trac tickets were found above:
  Ticket 3763 --> https://svn.open-mpi.org/trac/ompi/ticket/3763
2014-01-17 06:09:29 +00:00
Nathan Hjelm
f2a73fcdbd udreg: free huge page allocations correctly
This commit fixes an error path that occurs when huge page allocations are
enabled. In this case we allocate a huge page and try to register it but fail.
We then were calling free on the opal object. Fix this by calling the proper free
function.

cmr=v1.7.4:reviewer=rhc

This commit was SVN r30289.
2014-01-14 16:26:06 +00:00
Nathan Hjelm
f9d2032705 vader: ensure fast box data is aligned on 4-byte boundaries
This commit fixes a bus error on Solaris/Sparc.

Closes trac:4111

cmr=v1.7.5:ticket=trac:4053

This commit was SVN r30288.

The following Trac tickets were found above:
  Ticket 4053 --> https://svn.open-mpi.org/trac/ompi/ticket/4053
  Ticket 4111 --> https://svn.open-mpi.org/trac/ompi/ticket/4111
2014-01-14 16:04:52 +00:00
Rolf vandeVaart
e75afb2b82 Fix bug in distance computation code when deciding which devices to use on a NUMA node.
Also add a verbose flag so one can see what devices are selected as well as another flag to override
locality information and use all devices on the node.  

This commit was SVN r30287.
2014-01-14 15:41:56 +00:00
Nathan Hjelm
da1316ca6e vader: don't OBJ_RELEASE endpoint rcaches.
cmr=v1.7.4:reviewer=rhc

This commit was SVN r30284.
2014-01-13 23:44:34 +00:00
Jeff Squyres
fbd70d7798 George correctly pointed out that there's no need for this test: it
effectively exists elsewhere in the code already.

This commit was SVN r30277.
2014-01-13 22:26:22 +00:00
Jeff Squyres
20d6391734 Patch submitted by Paul Hargrove to fix NetBSD compile with -laio.
NetBSD puts the AIO functions in -lrt, vs. the usual libc.  So we
need the fbtl/posix configure.m4 to test for -lrt properly.

Reviewed by Jeff Squyres.

cmr=v1.7.4:reviewer=ompi-rm1.7:subject=Fix NetBSD use of -laio

This commit was SVN r30274.
2014-01-13 18:49:39 +00:00
Jeff Squyres
5f17bc3c2c Make the use of PROTECTED in the mpi_f08 module be optional.
Add a configure test to see if the Fortran compiler supports the
PROTECTED keyword.  If it does, use in mpi-f08-types.F90 (via a macro
defined in configure-fortran-output-bottom.h).

This is needed to support the PGI 9 Fortran compiler, which does not
support the PROTECTED keyword.

Note that regardless of whether we want to support the PGI 9 Fortran
compiler + mpi_f08, we need to correctly detect whether PROTECTED
works or not, and then use that determination as a criteria for
building the mpi_f08 module.  Previously, mpi-f08-types.F90 used
PROTECTED unconditionally, and we didn't test for it in configure.  So
if a compiler (e.g., PGI 9) supported everything else but didn't
support PROTECTED, it would try to compile the mpi_f08 stuff and choke
on the use of PROTECTED.

Refs trac:4093

This commit was SVN r30273.

The following Trac tickets were found above:
  Ticket 4093 --> https://svn.open-mpi.org/trac/ompi/ticket/4093
2014-01-13 18:35:42 +00:00
Ralph Castain
e7710873a1 Open/close the RTE framework
cmr=v1.7.4:reviewer=hjelmn

This commit was SVN r30270.
2014-01-13 17:43:24 +00:00
Jeff Squyres
40939df16c Add two predefined MPI object padding tests:
1. Canary compile-time test: this is compiled whenever you compile
    the entire OMPI tree.  It's a noinst standalone library comprised
    of a single .c file, so no one will notice its addition, and it
    doesn't get linked/installed to any real build products.  If we
    are out of padding space on any predefined MPI object type, it
    will fail to compile.  This will alert/annoy a human, who will be
    able to fix the real problem.
 1. Added a "make check" test that will print out the amount of
    predefined padding left on all the MPI object types.

This commit was SVN r30268.
2014-01-13 16:39:39 +00:00
Yossi Etigin
7564e2c13f Fix a recursion in mxm send flow which happens when mpi starts a new send from the context of send completion callback.
cmr=v1.7.5:reviewer=jsquyres

This commit was SVN r30265.
2014-01-12 17:47:03 +00:00
Yossi Etigin
9504969f7d fix communicator double-free from pt2pt component, caused by r29938.
cmr=v1.7.5:reviewer=brbarret

This commit was SVN r30264.

The following SVN revision numbers were found above:
  r29938 --> open-mpi/ompi@ecfb122c97
2014-01-12 17:38:14 +00:00
Ralph Castain
286ff6d552 For large scale systems, we would like to avoid doing a full modex during MPI_Init so that launch will scale a little better. At the moment, our options are somewhat limited as only a few BTLs don't immediately call modex_recv on all procs during startup. However, for those situations where someone can take advantage of it, add the ability to do a "modex on demand" retrieval of data from remote procs when we launch via mpirun.
NOTE: launch performance will be absolutely awful if you do this with BTLs that aren't configured to modex_recv on first message!

Even with "modex on demand", we still have to do a barrier in place of the modex - we simply don't move any data around, which does reduce the time impact. The barrier is required to ensure that the other proc has in fact registered all its BTL info and therefore is prepared to hand over a complete data package. Otherwise, you may not get the info you need. In addition, the shared memory BTL can fail to properly rendezvous as it expects the barrier to be in place.

This behavior will *only* take effect under the following conditions:

1. launched via mpirun

2. #procs is greater than ompi_hostname_cutoff, which defaults to UINT32_MAX

3. mca param rte_orte_direct_modex is set to 1. At the moment, we are having problems getting this param to register properly, so only the first two conditions are in effect. Still, the bottom line is you have to *want* this behavior to get it.

The planned next evolution of this will be to make the direct modex be non-blocking - this will require two fixes:

1. if the remote proc doesn't have the required info, then let it delay its response until it does. This means we need a way for the MPI layer to tell the RTE "I am done entering modex data".

2. adjust the SM rendezvous logic to loop until the required file has been created

Creating a placeholder to bring this over to 1.7.5 when ready.

cmr=v1.7.5:reviewer=hjelmn:subject=Enable direct modex at scale

This commit was SVN r30259.
2014-01-11 17:36:06 +00:00
Jeff Squyres
69ecf1670c Remove even more dead Fortran configury.
This configure option was only relevant when we were generating TKR
"use mpi" interfaces for MPI subroutines with choice buffers.  Now
that we aren't, the only interface that needs to accept a choice
buffer is MPI_SIZEOF (which we have to provide).  

And since there's now only several dozen interfaces in the "mpi" TKR
module, there's no reason to not generate ''all'' possible array rank
values (when there were thousands of interfaces, generating 4-vs-7
array ranks per interface per type was a big deal).  The default used
to be 4; now we can just hard-code it to 7, the max possible value for
Fortran 2003 (I think the max was raised ?to 11? in F2008, but let's
not go there for now).

cmr=v1.7.5:reviewer=dgoodell:subject=Remove even more dead Fortran configury

This commit was SVN r30257.
2014-01-11 14:06:59 +00:00
Jeff Squyres
b0ffdb3ae5 As noted by Paul Hargrove, older PGI compilers support ''some'' of
BIND(C), but not ''all'' of it.  So expand our configure checks to
look for multiple different forms of BIND(C):

 * ISO_C_BINDING
 * SUBROUTINE ... BIND(C)
 * TYPE, BIND(C)
 * TYPE(foo), BIND(C, name="bar")

If the compiler supports all of these, then declare that we support
BIND(C), and the rest of the mpi_f08 checks can continue.  If we miss
any one of those, don't bother continuing -- we won't build the
mpi_f08 module.

Also push the results of all of these tests down to ompi_info so that
they can be reported easily (e.g., "Hey, why doesn't my OMPI
installation have the mpi_f08 module?").

cmr=v1.7.4:reviewer=jsquyres:subject=Expand Fortran BIND(C) configure checks

This commit was SVN r30247.
2014-01-10 23:44:55 +00:00
Jeff Squyres
751aa195e9 Similar to r30244, make the libmpi_usempif08 Fortran library also
LIBADD libmpi.la

cmr=v1.7.4:reviewer=brbarret:subject=Add libmpi to libmpi_usempif08_LIBADD

This commit was SVN r30245.

The following SVN revision numbers were found above:
  r30244 --> open-mpi/ompi@7015343951
2014-01-10 21:33:10 +00:00
Jeff Squyres
7015343951 Make the Fortran libraries also LIBADD libmpi.la (libmpi_usempi for
TKR LIBADDs libmpi_mpifh; there	is no library for libmpi_usempi	ignore
TKR).

Refs trac:4085

This commit was SVN r30244.

The following Trac tickets were found above:
  Ticket 4085 --> https://svn.open-mpi.org/trac/ompi/ticket/4085
2014-01-10 21:30:58 +00:00
Jeff Squyres
34ae50a0ed Fix int <--> pointer casting by adding intermediate cast through (intptr_t)
Reviewed by Dave Goodell

cmr=v1.7.4:reviewer=ompi-rm1.7:subject=Add intptr_t casting in usnic btl

This commit was SVN r30243.
2014-01-10 20:42:53 +00:00
Nathan Hjelm
5259ab213f Fix one more error path in udreg. In this case we hit the maximum size
of the udreg cache and get a different error code back.

cmr=v1.7.4:reviewer=rhc

This commit was SVN r30242.
2014-01-10 19:27:32 +00:00
Ralph Castain
9566650458 Per Marco, don't define a "min" function if one is already defined to avoid conflict with cygwin reserved word
This commit was SVN r30241.
2014-01-10 18:03:25 +00:00
Ralph Castain
880943dc10 Per Marco, rename "interface" to "tcp_interface" to avoid cygwin reserved word
This commit was SVN r30240.
2014-01-10 18:02:22 +00:00
Ralph Castain
c7a94a57d7 Per Marco, rename ERROR tags to exit_ERROR to avoid cygwin reserved name issues.
Refs trac:4085

This commit was SVN r30239.

The following Trac tickets were found above:
  Ticket 4085 --> https://svn.open-mpi.org/trac/ompi/ticket/4085
2014-01-10 18:00:49 +00:00
Jeff Squyres
350d989c00 Fix OpenBSD warnings where <malloc.h> is available and usable, but not
intended to be used and emits a compile-time warning.

Thanks to Paul Hargrove for identifying the issue.

cmr=v1.7.4:reviewer=hjelmn:subject=remove/replace malloc.h

This commit was SVN r30231.
2014-01-10 17:20:49 +00:00
Jeff Squyres
53a3defde9 s/CACHE_LINE_SIZE/BASESMUMA_CACHE_LINE_SIZE/g to avoid a system macro
name clash on some BSDs.

cmr=v1.7.4:reviewer=pasha

This commit was SVN r30230.
2014-01-10 16:48:43 +00:00
Edgar Gabriel
217e61e345 add proper typcasts to intptr_t to avoid warnings on 32bit systems.
This commit was SVN r30229.
2014-01-10 16:19:04 +00:00
Jeff Squyres
212e07a1e9 Don't instantiate+init variables in a switch block.
Avoid compiler warning about (unnecessarily) initializing 2 variables
during instantiation at the top of a switch block (but outside of any
case statements): just declare the variables at the top of the outter
block.  They're already safely initialized, so don't worry about
initializing them in the instantiation.

Reviewed by Dave Goodell.

cmr=v1.7.4:reviewer=ompi-rm1.7:subject=Don't instantiate+init variables in a switch block

This commit was SVN r30228.
2014-01-10 15:39:16 +00:00
Mike Dubman
110c99af4f sharing negative tag space between libNBC and HCOLL
fixed by devendar, reviewed by miked
cmr=v1.7.4:reviewer=ompi-rm1.7

This commit was SVN r30224.
2014-01-10 12:51:34 +00:00
Nathan Hjelm
52c231df3e ob1 does not check the return code of mpool_register. This can cause the
ob1 dummy registration to actually be used when using udreg. Fix this by
always setting reg to NULL when mpool/udreg's register function fails.

cmr=v1.7.4:reviewer=rhc

This commit was SVN r30214.
2014-01-10 00:46:16 +00:00
Jeff Squyres
b0b17c62aa Protect against orte_proc_applied_binding being NULL.
It is now possible for orte_proc_applied_binding to be NULL (e.g., if
you mpirun --bind-to none), so we need to ensure we don't pass it down
to opal_hwloc_base_cset2*str().

Also, take the opprotunity to de-duplicate some strings that are used
in multiple places.

Refs trac:4073

This commit was SVN r30204.

The following Trac tickets were found above:
  Ticket 4073 --> https://svn.open-mpi.org/trac/ompi/ticket/4073
2014-01-09 23:38:34 +00:00
Jeff Squyres
115025b8dd Ensure that the usnic BTL is only built on 64 bit Linux platforms.
Reviewed by Dave Goodell.

cmr=v1.7.4:reviewer=ompi-rm1.7:subject=Ensure the usnic BTL only builds on 64 bit Linux

This commit was SVN r30199.
2014-01-09 22:17:01 +00:00
Brian Barrett
013e0ec771 * Add multi-device support to the Portals 4 btl.
* Remove use of the Portals 4 proc tag for the btl, as it's causing more
problems than its worth.

This commit was SVN r30191.
2014-01-09 20:01:42 +00:00
Ralph Castain
f179f2086b Do a better job of reporting bindings - if someone gives a spec that binds us to all processors, then we are effectively unbound and should report it clearly instead of outputting a long line of B's.
cmr=v1.7.4:reviewer=jsquyres:subject=Do a better job of reporting bindings

This commit was SVN r30179.
2014-01-09 16:16:16 +00:00
Nathan Hjelm
bb01fc2938 Add missing MCA variable enumerator sentinel.
cmr=v1.7.4:reviewer=rhc

This commit was SVN r30178.
2014-01-09 15:28:42 +00:00
Alina Sklarevich
2869ff1782 mxm: fixes for compilation warnings.
removed set but not used variables and a variable that is unused.

reviewed by miked
cmr=v1.7.4:reviewer=ompi-rm1.7

This commit was SVN r30176.
2014-01-09 15:15:14 +00:00
Mike Dubman
0fae2caef3 Create a comm keyval for hcoll component with delete callback function.
Set comm attribute with keyval.
Wait for pending hcoll module tasks in comm delete callback where PML
still valid on the communicator. safely destroy hcoll context during
hcoll module destructor.

Author: Devendar Bureddy 
reviewed by miked

cmr=v1.7.4:reviewer=ompi-rm1.7

This commit was SVN r30175.
2014-01-09 11:27:24 +00:00
Nathan Hjelm
10ecd80c8c Fix typo in udreg mpool that could cause us to try to use an invalid
registration. This was causing transaction errors on Aries systems.

cmr=v1.7.4:reviewer=rhc

This commit was SVN r30174.
2014-01-09 05:56:29 +00:00
Ralph Castain
2453843972 Add missing include - thanks to Paul Hargrove for spotting it
cmr=v1.7.4:reviewer=jsquyres:subject=add missing include in bcol

This commit was SVN r30171.
2014-01-09 03:57:55 +00:00
Jeff Squyres
776f6144af Part 2/companion to r30169: remove Fortran TKR interfaces for MPI
subroutines with choice buffers.

Refs trac:4065

This commit was SVN r30170.

The following SVN revision numbers were found above:
  r30169 --> open-mpi/ompi@759ee33fd4

The following Trac tickets were found above:
  Ticket 4065 --> https://svn.open-mpi.org/trac/ompi/ticket/4065
2014-01-09 02:23:20 +00:00
Jeff Squyres
759ee33fd4 Per thread starting here:
http://www.open-mpi.org/community/lists/users/2014/01/23327.php

Revert the Fortran mpi module default size to "small", meaning that we
won't provide interfaces for MPI subroutines that take a choice buffer
any more.  The short version is that MPI-3 p610:34-41 disallows it.

This commit simply removes all these subroutines from the build
process (i.e., remove them from nodist_libmpi_usempi_la_SOURCES).
Since MPI-3 actually forbids providing these interfaces, I'll do a
second commit to actually remove all the scripts and associated
Makefile.am junk.

cmr=v1.7.4:reviewer=dgoodell:subject=Remove choice buffer interfaces from Fortran mpi module

This commit was SVN r30169.
2014-01-09 01:33:13 +00:00
Jeff Squyres
ca84ffdbd4 Need to have BIND(C) on the callback interfaces. Reviewed/confirmed
by Tobias Burnus.

Refs trac:4058.

This commit was SVN r30164.

The following Trac tickets were found above:
  Ticket 4058 --> https://svn.open-mpi.org/trac/ompi/ticket/4058
2014-01-08 23:12:41 +00:00
Jeff Squyres
9d41632eba Change the MCA level to 2 (from 5) on the rationale that it may be
needed for correctness.  The if_include/if_exclude are level 1, and
the TCP port range params are level 2; this parameter seems to be on
par with the TCP port range params.

Refs trac:4019

This commit was SVN r30161.

The following Trac tickets were found above:
  Ticket 4019 --> https://svn.open-mpi.org/trac/ompi/ticket/4019
2014-01-08 19:04:26 +00:00
Jeff Squyres
8c871c2db6 Fix some compiler warnings:
* Remove some set-but-not-used variables
 * Make a convenience function return void (we weren't using the
   return code, anyway)
 * Mark a function as inline (it was supposed to be inline anyway)

Reviewed by Dave Goodell.

cmr=v1.7.5:reviewer=ompi-rm1.7:subject=Fix usnic BTL compiler warnings

This commit was SVN r30160.
2014-01-08 16:57:14 +00:00
Ralph Castain
cb31187bbe Correct tcp_not_use_nodelay option processing - change in mca param system incorrectly reversed the original parameter
Thanks to Tetsuya Mishima for detecting it!

cmr=v1.7.4:reviewer=jsquyres:subject=Correct tcp_not_use_nodelay option processing

This commit was SVN r30157.
2014-01-08 15:12:50 +00:00
Mike Dubman
43d6a30693 Fix problems of:
- HCOLL close without init
- Call hcoll progress after comm finalize
- mpirun default for coll_hcoll_enable is 1

fixed by Igor, reviewed by miked
cmr=v1.7.4:reviewer=ompi-rm1.7

This commit was SVN r30156.
2014-01-08 10:55:25 +00:00
Jeff Squyres
36cca10042 Thanks to a reminder from Tobias Burunus, commit support for the
upcoming GCC/gfortran 4.9's ignore TKR interface.

This was originally committed in a side mercurial repo, but I sadly
completely forgot about it until Tobias reminded me.

cmr=v1.7.5:reviewer=dgoodell:subject=Add support for gfortran 4.9 Fortran ignore TKR

This commit was SVN r30152.
2014-01-08 03:46:27 +00:00
Ralph Castain
e2ca265f40 Per 1/7/2014 telecon: Add an MCA param to turn on all warnings for missing excluded interfaces.
Refs trac:4019

This commit was SVN r30146.

The following Trac tickets were found above:
  Ticket 4019 --> https://svn.open-mpi.org/trac/ompi/ticket/4019
2014-01-08 00:21:25 +00:00
Jeff Squyres
13b29cff2c This commit compliements/completes r30140. r30140 made all the
configury/Makefile.am changes; this commit renames the internal
installdirs.h framework struct field names to match the configry macro
names:

 * pkgdatdir ->	ompidatadir
 * pkglibdir -> ompilibdir
 * pkgincludedir -> ompiincludedir

This commit was SVN r30145.

The following SVN revision numbers were found above:
  r30140 --> open-mpi/ompi@8b778903d8
2014-01-07 23:36:33 +00:00
Brian Barrett
7d472ad5a5 Improve some comments
This commit was SVN r30144.
2014-01-07 23:35:04 +00:00