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Граф коммитов

17954 Коммитов

Автор SHA1 Сообщение Дата
Ralph Castain
8b8333da3e Add missing include
This commit was SVN r28114.
2013-02-26 19:56:05 +00:00
Ralph Castain
e413596705 Add the loopexit API to the opal_event definitions
This commit was SVN r28113.
2013-02-26 19:27:26 +00:00
Ralph Castain
bd9265c560 Per the meeting on moving the BTLs to OPAL, move the ORTE database "db" framework to OPAL so the relocated BTLs can access it. Because the data is indexed by process, this requires that we define a new "opal_identifier_t" that corresponds to the orte_process_name_t struct. In order to support multiple run-times, this is defined in opal/mca/db/db_types.h as a uint64_t without identifying the meaning of any part of that data.
A few changes were required to support this move:

1. the PMI component used to identify rte-related data (e.g., host name, bind level) and package them as a unit to reduce the number of PMI keys. This code was moved up to the ORTE layer as the OPAL layer has no understanding of these concepts. In addition, the component locally stored data based on process jobid/vpid - this could no longer be supported (see below for the solution).

2. the hash component was updated to use the new opal_identifier_t instead of orte_process_name_t as its index for storing data in the hash tables. Previously, we did a hash on the vpid and stored the data in a 32-bit hash table. In the revised system, we don't see a separate "vpid" field - we only have a 64-bit opaque value. The orte_process_name_t hash turned out to do nothing useful, so we now store the data in a 64-bit hash table. Preliminary tests didn't show any identifiable change in behavior or performance, but we'll have to see if a move back to the 32-bit table is required at some later time.

3. the db framework was a "select one" system. However, since the PMI component could no longer use its internal storage system, the framework has now been changed to a "select many" mode of operation. This allows the hash component to handle all internal storage, while the PMI component only handles pushing/pulling things from the PMI system. This was something we had planned for some time - when fetching data, we first check internal storage to see if we already have it, and then automatically go to the global system to look for it if we don't. Accordingly, the framework was provided with a custom query function used during "select" that lets you seperately specify the "store" and "fetch" ordering.

4. the ORTE grpcomm and ess/pmi components, and the nidmap code,  were updated to work with the new db framework and to specify internal/global storage options.

No changes were made to the MPI layer, except for modifying the ORTE component of the OMPI/rte framework to support the new db framework.

This commit was SVN r28112.
2013-02-26 17:50:04 +00:00
Jeff Squyres
7136dbb5b3 Fixes trac:3523. Discussed on the OMPI weekely teleconf today: add a
configure test to ensure that the Fortran compiler supports BIND(C)
with LOGICAL parameters (per
http://lists.mpi-forum.org/mpi-comments/2013/02/0076.php).

This may become moot shortly -- Pathscale tells me that they intend
upgrade their compiler to support BIND(C) with default LOGICAL in the
very near term (this week?).  But we still want this configure test so
that Open MPI won't even try to build the F08 bindings with older
versions of the Pathscale compilers (or any compiler that doesn't
support BIND(C) and LOGICAL parameters).

This commit was SVN r28110.

The following Trac tickets were found above:
  Ticket 3523 --> https://svn.open-mpi.org/trac/ompi/ticket/3523
2013-02-26 17:11:11 +00:00
Jeff Squyres
36719440f3 Sync NEWS with the final 1.6.4 release.
This commit was SVN r28108.
2013-02-26 17:02:45 +00:00
George Bosilca
ceb75eae75 Welcome in the wonderful world of MPI 3.0.
This commit was SVN r28106.
2013-02-26 10:22:12 +00:00
Jeff Squyres
c438692fac Thanks to Brian for noticing an incorrect MPI_ERR value in the Fortran
MPI constants, which led to also find that MPI_ERR_WIN was mistakenly
not defined in the Fortran MPI constants.

This fix also needs to be applied to v1.7.  Brian -- can you review?

cmr:v1.7

This commit was SVN r28102.
2013-02-25 17:28:30 +00:00
Ralph Castain
70a28c8a27 Now that we are using local ranks in OMPI, we need to define an ompi_local_rank_t and equate it to orte_local_rank_t. Change the sm btl to use the correct abstraction.
This commit was SVN r28098.
2013-02-22 17:48:53 +00:00
Jeff Squyres
fb217ff8ff Fix --disable-mpi-io in the Fortran mpi-f08 interface.
This commit was SVN r28097.
2013-02-22 03:08:04 +00:00
Samuel Gutierrez
af5ed9b25c OMPI_NODE_RANK_INVALID ==> OMPI_LOCAL_RANK_INVALID
This commit was SVN r28096.
2013-02-21 18:28:07 +00:00
Samuel Gutierrez
4bf0134901 Remove debug.
This commit was SVN r28095.
2013-02-21 18:21:22 +00:00
Samuel Gutierrez
b7791963f2 Fix sm BTL initialization for MPI_Comm_spawn and friends. Thanks to Jeff for
finding the issue.

This commit was SVN r28094.
2013-02-21 18:19:46 +00:00
Jeff Squyres
9bd4b814db Fix one more nroff macro issue
This commit was SVN r28090.
2013-02-21 17:38:06 +00:00
Jeff Squyres
76fcd42bc3 Fix minor nroff macro issues.
This commit was SVN r28088.
2013-02-21 17:35:36 +00:00
Jeff Squyres
debe06289c Thanks to Siegmar Gross; he pointed out that I didn't read
http://docs.oracle.com/javase/tutorial/java/nutsandbolts/datatypes.html
carefully enough: a Java "char" is actually 16 bits, not 8.

This commit was SVN r28087.
2013-02-21 14:29:18 +00:00
Jeff Squyres
4e2ee5a27b Per
http://docs.oracle.com/javase/tutorial/java/nutsandbolts/datatypes.html,
the sizes of Java types are fixed.  So we just assign them to their
corresponding MPI fixed-size datatypes where possible.

This commit was SVN r28085.
2013-02-20 21:57:48 +00:00
Nathan Hjelm
55cf850eca Add comment about r28083
This commit was SVN r28084.

The following SVN revision numbers were found above:
  r28083 --> open-mpi/ompi@5411e28c00
2013-02-20 21:42:13 +00:00
Nathan Hjelm
5411e28c00 btl/openib: don't align fragments on 2 byte boundaries (changed to 8)
cmr:v1.6,v1.7

This commit was SVN r28083.
2013-02-20 21:27:01 +00:00
Brian Barrett
7c3e42a689 Work around issue shown in #3505 by not linking against libpci by default.
This commit was SVN r28076.
2013-02-19 16:19:33 +00:00
Rolf vandeVaart
da3e9ff906 Add show_help.h where needed.
This commit was SVN r28071.
2013-02-19 15:42:09 +00:00
Brian Barrett
3c83618799 fix a missing header file issue with IB
This commit was SVN r28070.
2013-02-18 18:29:14 +00:00
Vasily Filipov
52a9241859 MTL MXM: adapt to mxm 2.0 api changes - flags are only for send requests, and SYNC is part of the opcode.
This commit was SVN r28069.
2013-02-17 10:04:19 +00:00
Vasily Filipov
8270d8f52a MTL MXM: "#include "opal/util/show_help.h" adding.
This commit was SVN r28068.
2013-02-17 09:51:03 +00:00
Jeff Squyres
12e047e594 Update documentation for rankfiles in orterun.1:
* Add a little more description of what rankfiles are
 * Update that we use logical numbering for socket:core notation
 * Mention +nX notation

This commit was SVN r28067.
2013-02-16 17:52:30 +00:00
Ralph Castain
ebad55b933 Apply patches from ORNL to fix compile issues - minor stuff. Thanks to Geoffroy Vallee for the patches.
This commit was SVN r28065.
2013-02-15 22:14:23 +00:00
Ralph Castain
c0b670bea8 I guess some profiling tools and debuggers require that the argv[0] of each rank be unique so they can create a filename based on that value. For those obscure cases, provide an mpirun cmd line option that indexes each argv[0] by rank
This commit was SVN r28064.
2013-02-15 20:20:49 +00:00
Jeff Squyres
acefc1588e Patch for Cygwin support: Use S_IRWXU for shmget() and include
<sys/stat.h>.  Thanks to Marco Atzeri for reporting the issue and
providing an initial patch.

This commit was SVN r28060.
2013-02-15 14:31:58 +00:00
Jeff Squyres
fde6207fe1 Patch for Cygwin support: use correct DSO/shared library prefix and
suffix.  Thanks to Marco Atzeri for reporting the issue and providing
an initial patch.

This commit was SVN r28059.
2013-02-15 14:12:39 +00:00
Ralph Castain
b9897267ef Cleanup report-bindings so it always reports the actual binding instead of what was requested. Ensure we don't report twice if it is an MPI process being launched.
This commit was SVN r28057.
2013-02-14 17:24:28 +00:00
Jeff Squyres
bbddd6ea03 Add header file for opal_show_help().
This commit was SVN r28056.
2013-02-13 16:31:59 +00:00
Ralph Castain
037918e7b4 Correctly parse the rank file slot_list when given "S:C" - the first position holds the socket, so start looking for cores at posn=1
This commit was SVN r28054.
2013-02-13 13:06:03 +00:00
Ralph Castain
744ed49b2d Begin cleanup of the thread_lock calls in ORTE. We'll ignore the ones in the rml/oob for now as that code block is being rewritten anyway.
This commit was SVN r28053.
2013-02-13 01:53:12 +00:00
Brian Barrett
504a6d036f * Rather than use the extra_includes directive, add the extra includes (which is really just -I${includedir}/openmpi/ for devel headers) to CPPFLAGS, since all the other necessary -Is for devel headers (like libevent and hwloc) are added to CPPFLAGS.
* Clean up ${includedir} and ${libdir} for script wrapper compilers
* Update script wrapper compilers to work like the C wrapper compilers w.r.t static and dynamic linking
* Remove the ORTE script wrapper compilers since they didn't support the ${includedir} stuff and Ralph said they weren't used anymore.

This commit was SVN r28052.
2013-02-13 00:33:05 +00:00
Brian Barrett
312f37706e In talking about this with Jeff and Ralph, we don't actually need
ompi_show_help, because opal_show_help is replaced with an 
aggregating version when using ORTE, so there's no reason to
directly call orte_show_help.

This commit was SVN r28051.
2013-02-12 21:10:11 +00:00
Joshua Ladd
70ad711337 Backing out the Open SHMEM project
This commit was SVN r28050.
2013-02-12 17:45:27 +00:00
Mike Dubman
ff384daab4 Added new project: oshmem.
This commit was SVN r28048.
2013-02-12 15:33:21 +00:00
Jeff Squyres
f922fcea08 Due to this thread:
http://www.open-mpi.org/community/lists/users/2013/02/21356.php and a
helpful tip from Dave Goodell, set the precious variables for
compilers to "no" that we don't want.  Libtool's m4 configry will
interpret this as "I won't be using this language; don't bother
setting it up."

This commit was SVN r28047.
2013-02-12 15:24:40 +00:00
Jeff Squyres
32bc1a7622 Update svn:ignore
This commit was SVN r28046.
2013-02-12 15:23:43 +00:00
Jeff Squyres
5e30979e17 Update svn:ignore
This commit was SVN r28045.
2013-02-12 15:09:52 +00:00
Mike Dubman
55cb00f8a3 Remove references to unexisting files:
ompi/mca/common/netpatterns/
    ompi/mca/common/commpatterns/

This commit was SVN r28044.
2013-02-12 13:21:47 +00:00
Brian Barrett
33cb4d21fe Need to include libltdl's includes so that the lt wrappers can compile
This commit was SVN r28042.
2013-02-12 00:41:03 +00:00
Rolf vandeVaart
6843f02b37 Add wrapper functions to LTDL functions so other parts of the library can access the LTDL functionality.
Reviewed by jsquyres. 

This commit was SVN r28041.
2013-02-11 15:11:47 +00:00
Eugene Loh
3d44f97572 Fix hwloc get-cpubind routine for Solaris. FIRST, check
processor_bind to see if we're bound to a single core.
If not, THEN check lgroup affinity.  Already CMR'ed to
v1.6 (trac 3507) and fixed upstream in hwloc (r5295).

This commit was SVN r28040.

The following SVN revision numbers were found above:
  r5295 --> open-mpi/ompi@6df8cb0f02
2013-02-10 04:02:19 +00:00
Jeff Squyres
6f257c477f Fix typo in Makefile.am.
This commit was SVN r28037.
2013-02-07 13:41:39 +00:00
Nathan Hjelm
ab57e2ef38 update lustre configuration to use OMPI_CHECK_PACKAGE and only check for liblustreapi (not liblustre)
This commit was SVN r28036.
2013-02-06 17:22:58 +00:00
Pavel Shamis
a31bc57849 Moving mca/common/netpatterns and commpaterns to ompi/patterns.
This commit was SVN r28035.
2013-02-05 21:52:55 +00:00
Brian Barrett
57b21014f8 Fix issue where the static inline part of the declaration would be improperly
set when using C++

This commit was SVN r28034.
2013-02-05 18:15:32 +00:00
Brian Barrett
d80218996f Rather than setting up the direct call stuff in ompi_mca (which requires
modifying ompi_mca for every interface that is direct called), do it in
the framework's .m4 file.

This commit was SVN r28031.
2013-02-04 23:26:42 +00:00
Ralph Castain
6dd4a8cdf9 The opal_list_t destructor doesn't release the items on the list prior to destructing or releasing it. Provide two convenience macros for doing so.
This commit was SVN r28029.
2013-02-04 19:42:57 +00:00
Vasily Filipov
21b170b43b MTL MXM: push commit r27987 back, now with right user.
r27987 - MTL MXM: ver. 2.0 interface changes.

This commit was SVN r28026.

The following SVN revision numbers were found above:
  r27987 --> open-mpi/ompi@2735658d81
2013-02-04 06:59:24 +00:00