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Gilles Gouaillardet
8aff67c399 topo/base: correctly support MPI_UNWEIGHTED in mca_topo_base_dist_graph_neighbors() 
Thanks Jun Kudo for the bug report.
 2016-03-01 10:28:28 +09:00
Gilles Gouaillardet
e5d6b97db4 opal: fix pragma for GCC 6 and later 
GCC 6 and later should ignore -Wpedantic instead of -pedantic
 2016-02-29 13:56:22 +09:00
Jeff Squyres
20fade1345 examples: fix check for Fortran "use mpi" bindings 
The output from "ompi_info --parsable" for the Fortran "use mpi"
bindings apparently has changed over time.  It is now:

   "yes (full: ignore TKR)"
or "yes (limited: overloading)"

(including the quotes)

So update the test in examples/Makefile to also look for the quote.
 2016-02-28 16:30:09 -08:00
rhc54
78a1fd5d54 Merge pull request #1413 from rhc54/topic/iof 
Fix a segfault that can occur when very short-lived, non-ORTE procs are run
 2016-02-28 13:55:15 -08:00
Ralph Castain
263b0c95a8 Fix a segfault that can occur when very short-lived, non-ORTE procs are run 2016-02-28 12:30:20 -08:00
Jeff Squyres
89f225ea7f Merge pull request #1410 from jsquyres/pr/cxx11-has-jumped-the-shark 
cxx: "rank" is now a function in C++11
 2016-02-27 09:37:13 -05:00
Jeff Squyres
89d0a033b7 cxx: "rank" is now a function in C++11 
Use "myrank" instead (I tried using ::rank, but had varied
success... so I just renamed the variable).
 2016-02-25 15:56:08 -06:00
rhc54
6ae75f007a Merge pull request #1409 from rhc54/topic/singleton 
Provide an option to allow isolated singletons
 2016-02-25 15:36:43 -06:00
Ralph Castain
cdb494566d Provide an option to allow isolated singletons 2016-02-25 11:33:26 -06:00
George Bosilca
dbe93b0b19 Use mca_bml_base_get_endpoint 
Correctly use mca_bml_base_get_endpoint instead of accessing the
endpoint directly.
 2016-02-25 11:00:30 -06:00
Sylvain Jeaugey
5f32f49eb8 pml/ob1: Fix segmentation fault on CUDA path. 
Fix segfault due to mca_pml_ob1_cuda_need_buffers not handling the case of the
endpoint not being there. Calling mca_bml_get_endpoint() seems to fix the problem.

Fixes open-mpi/ompi#1402
 2016-02-24 21:32:25 -08:00
rhc54
026cb37c4e Merge pull request #1400 from rhc54/topic/config 
Adjust the pmix external component configure error messages
 2016-02-24 14:22:59 -06:00
Ralph Castain
d28d3ee901 Make the error message on external pmix library a little clearer by separating out the libevent from the libhwloc checks 2016-02-24 11:20:25 -06:00
Ralph Castain
e8d347d7bd Add missing includes 2016-02-24 08:56:02 -06:00
Jeff Squyres
be22971c3a Merge pull request #1398 from jsquyres/pr/test-lib-name-cleanups 
tests: fix library name
 2016-02-23 21:31:39 -06:00
Gilles Gouaillardet
477991b5aa btl/openib: fix abstraction violation and use opal_memory->memoryc_set_alignment 2016-02-24 09:50:13 +09:00
Gilles Gouaillardet
d8482ce6f4 opal/mca/memory: add a memoryc_set_alignment subroutine to the OPAL memory MCA 
this commit also (partially) reverts :
 - open-mpi/ompi@7de01b347c
 - open-mpi/ompi@8b05f308f9
 2016-02-24 09:50:12 +09:00
Jeff Squyres
1340d51ddd tests: fix library name 
Use @OPAL_LIB_PREFIX@ as appropriate in the library that we link against.
 2016-02-23 16:22:59 -08:00
Edgar Gabriel
2c4b93f72b Merge pull request #1395 from edgargabriel/pr/fcoll-static-large-ops-fix 
fix the data size counter for large ops for the static fcoll component
 2016-02-23 10:26:16 -06:00
Edgar Gabriel
45003ef78d fix the data size counter for large ops for the static fcoll component 2016-02-23 08:33:50 -06:00
George Bosilca
d6fb56af29 Use the correct printf conversion specifier. 2016-02-23 01:26:27 -06:00
Gilles Gouaillardet
308bbcbad1 ompi/dpm: retrieves OPAL_PMIX_ARCH in heterogeneous mode 
also remove code duplication by using ompi_proc_complete_init_single()

Thanks Siegmar Gross for reporting this issue, and Ralph for the guidance.
 2016-02-22 11:01:06 +09:00
Gilles Gouaillardet
a4aa4c9571 ompi_proc_complete_init_single: make the subroutine public 
and accept a proc from a different job
 2016-02-22 11:01:06 +09:00
rhc54
1df4457af2 Merge pull request #1392 from rhc54/topic/dvm 
Tools don't create the orte_job_data table, so don't remove jobs from it
 2016-02-21 17:42:48 -08:00
Ralph Castain
77f800b7e8 Tools don't create the orte_job_data table, so don't remove jobs from it 2016-02-21 16:29:00 -08:00
Ralph Castain
64b7728f33 Fix typo - do not look at daemon job when considering completion of launch 2016-02-21 14:44:51 -08:00
rhc54
b499d4ba2a Merge pull request #1391 from rhc54/topic/dvm 
Convert the orte_job_data pointer array to a hash table so it doesn't…
 2016-02-21 13:07:59 -08:00
Ralph Castain
d653cf2847 Convert the orte_job_data pointer array to a hash table so it doesn't grow forever as we run lots and lots of jobs in the persistent DVM. 2016-02-21 11:55:49 -08:00
Ralph Castain
309e23ab3a Fix minor typo 2016-02-20 01:33:10 -08:00
yohann
59b6d041f8 mtl/ofi: Check allocated pointer. 2016-02-19 16:59:47 -08:00
yohann
bd47062764 mtl/ofi: Fix error handling. 2016-02-19 16:58:41 -08:00
yohann
404987e9b3 mtl/ofi: Fix mismatching types. 2016-02-19 16:57:26 -08:00
yohann
3ad59435ce mtl/ofi: Prevent possible memory leak. 2016-02-19 16:57:02 -08:00
Ralph Castain
8c92a179c0 Minor memory leak 2016-02-19 15:05:39 -08:00
rhc54
1f7e2d7d41 Merge pull request #1388 from rhc54/topic/iof 
Cleanup the output-filename options so they work as expected.
 2016-02-19 13:56:05 -08:00
Ralph Castain
0c72ba89b9 Cleanup the output-filename options so they work as expected. Have the remote nodes output locally to the files instead of sending it all back to the HNP. 
Fix Solaris issues by renaming struct field
 2016-02-19 12:41:46 -08:00
Edgar Gabriel
b33db517c1 Merge pull request #1387 from edgargabriel/dynamic_gen2-overlap 
Updates to the dynamic_gen2 component
 2016-02-19 12:00:29 -06:00
Edgar Gabriel
92d1b99468 optimize the shuffle step: 
1. use communicator collectives if possible for performance reasons
 2. combined multiple allgathers into a single one
 2016-02-19 11:04:04 -06:00
Edgar Gabriel
e63836c653 clean up the mca parameter handling of the component. Add new parameters for number of sub groups and write chunk size. This will allow to perform a systematic parameter study. 2016-02-19 10:15:28 -06:00
Edgar Gabriel
4f400314e0 add the dynamic_gen2 component into the fcoll selection table. 2016-02-19 09:32:54 -06:00
Edgar Gabriel
268d525053 change the tag to be a positive value. handle 0-byte situations correctly. 2016-02-19 08:28:50 -06:00
Edgar Gabriel
ad79012059 first cut on the version which overlaps the communication/computation of 2 iterations. 2016-02-19 08:28:50 -06:00
Nathan Hjelm
e57ce1e1ef Merge pull request #1384 from hjelmn/xrc_get_fix 
btl/openib: XRC save SRQ#s on the loopback endpoint
 2016-02-18 21:48:45 -07:00
Nathan Hjelm
2031bb6f01 btl/openib: XRC save SRQ#s on the loopback endpoint 
This commit fixes a bug that can occur when communicating via XRC to
peers on the same node. UDCM was not saving the SRQ numbers on the
loopback endpoint (which shares its ib_addr info with all local peers)
so any messages to local peers use an invalid SRQ number.

Fixes open-mpi/ompi#1383

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2016-02-18 20:59:11 -07:00
rhc54
bfd4254a7b Merge pull request #1382 from rhc54/topic/cleanup 
Cleanup some valgrind complaints about jumps with uninitialized values.
 2016-02-18 17:29:37 -08:00
Nathan Hjelm
27e7b6e466 Merge pull request #1381 from hjelmn/ddt_colon_fix 
orterun: allow DDT if options contain :'s
 2016-02-18 17:48:21 -07:00
Nathan Hjelm
820b178384 Merge pull request #1380 from hjelmn/xrc_get_fix 
btl/openib: XRC fix bug that could cause an invalid SRQ# to be used
 2016-02-18 17:33:09 -07:00
Ralph Castain
6e68d758b9 Cleanup some valgrind complaints about jumps with uninitialized values. Fix a few IOF issues reported by Mark Santcroos when submitting jobs from tools. Add the ability to pass directives to the --output-filename option that tell ORTE to (a) not include the jobid in the path to the output files, and (b) not to copy the output to the tool (i.e., just store it in the files). 
ck

Remove stale debug

Fix a segfault if no subscribers are present
 2016-02-18 16:30:37 -08:00
Nathan Hjelm
69de442136 orterun: allow DDT if options contain :'s 
There is a bug in MPMD detection that disables totalview if a : is
found anywhere on the command line. This includes inside an argument
option or MCA variable value. This commit changes the check to look
for the string " : " instead of the character : which should eliminate
the issue in most cases.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-02-18 16:56:08 -07:00
Nathan Hjelm
371df45bf8 btl/openib: fix locking bugs with XRC ib_addr lock 
This bug fixes two issue with the ib_addr lock:

 - The ib_addr lock must always be obtained regardless of
   opal_using_threads() as the CPC is run in a seperate thread.

 - The ib_addr lock is held in mca_btl_openib_endpoint_connected when
   calling back into the CPC start_connect on any pending
   connections. This will attempt to obtain the ib_addr lock
   again. Since this is not a performance-critical part of the code
   the lock has been changed to be recursive.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-02-18 15:55:34 -07:00