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Граф коммитов

2413 Коммитов

Автор SHA1 Сообщение Дата
Ralph Castain
193cceb483 Okay, since a certain other RM out there made a fuss about being able to lock their daemons to specified cores, offer the same option here. The MCA param orte_daemon_cores can be used to specify which core(s) you want the orte daemons to use. This will have no bearing on the application procs - unbound will remain unbound, and binding directives will be applied to the apps.
Yippee skippee...

This commit was SVN r30513.
2014-01-30 23:50:14 +00:00
Ralph Castain
ad7c84caee Cleanup some stale definitions in the new database components
This commit was SVN r30506.
2014-01-30 19:56:41 +00:00
Jeff Squyres
bc795cd25b Fix typo in comment.
This commit was SVN r30504.
2014-01-30 18:05:34 +00:00
Ralph Castain
83e32aadb7 Add a variant of opal_init/finalize for running unit tests
This commit was SVN r30497.
2014-01-30 11:14:36 +00:00
Ralph Castain
4a8888d377 Hey, having a unit test for opal_db proved useful. Found a few bugs and missing areas of support.
cmr=v1.7.5:reviewer=jsquyres:subject=fix bugs and missing support in opal_db

This commit was SVN r30493.
2014-01-30 00:51:18 +00:00
Rolf vandeVaart
791a3a5ec6 Fix CUDA-aware support with sendi optimization. Need to make sure copy function
is initialized.

This commit was SVN r30437.
2014-01-27 18:35:01 +00:00
George Bosilca
18ae20022a Don't forget to release the bitmaps.
This commit was SVN r30428.
2014-01-26 17:24:38 +00:00
Jeff Squyres
98d67add3c Updates to the README and wrapper compiler man pages for Fortran.
Thanks to Paul Hargrove for spotting these issues.

cmr=v1.7.4:reviewer=rhc:subject=Fortran README+man page updates

This commit was SVN r30414.
2014-01-24 21:00:00 +00:00
Ralph Castain
c6c10f47b8 Label rows with the table name when printing db logs
cmr=v1.7.5:reviewer=rhc

This commit was SVN r30410.
2014-01-24 17:30:12 +00:00
Ralph Castain
883c1a1c57 Fix ia64 operations by correcting a couple of bugs in the ia64 atomics. Thanks to Paul Hargrove for the patch!
Since Paul is the only one of the team with the required hardware to test it, and he has done so, consider this RM-approved.

cmr=v1.7.5:reviewer=ompi-gk1.7

This commit was SVN r30401.
2014-01-24 00:14:37 +00:00
Ralph Castain
a19510187b This is an old patch (r26226) from two years ago that somehow went directly into the 1.6 branch without first entering the trunk. Hence, the problem it fixed still remains in the trunk, and in the 1.7 series as a regression :-(
Thanks to Paul Hargrove for tracking it down.

RM-approved

cmr=v1.7.4:reviewer=ompi-gk1.7

This commit was SVN r30397.

The following SVN revision numbers were found above:
  r26226 --> open-mpi/ompi@12781482b9
2014-01-23 15:47:49 +00:00
Jeff Squyres
4204bd0b70 Fix harmless typo in error message.
Submitted by Paul Hargrove, reviewed by Jeff Squyres.

cmr=v1.7.5:reviewer=ompi-rm1.7

This commit was SVN r30394.
2014-01-23 14:19:57 +00:00
Jeff Squyres
7768828d2d Addendum to r30298: tweak the wording of the help messages a bit.
Refs trac:4117.  Please use this commit rather than the patch attached to
the ticket; the patch had a few mistakes in the tweaked wording.

This commit was SVN r30362.

The following SVN revision numbers were found above:
  r30298 --> open-mpi/ompi@58479399c3

The following Trac tickets were found above:
  Ticket 4117 --> https://svn.open-mpi.org/trac/ompi/ticket/4117
2014-01-22 12:17:14 +00:00
Ralph Castain
9a2dc54311 Apply a patch provided by Paul Hargrove back in Jan 2013 that fixes MIPS assembly issues. This patch was originally reviewed and RM-approved to go into the 1.6 branch (which never happened for logistical reasons), and subsequently the trunk patch was provided. Paul has verified the patch and its application to 1.7.4, so we will consider it reviewed for that purpose.
cmr=v1.7.4:reviewer=ompi-rm1.7:subject=Fix MIPS assembly

This commit was SVN r30348.
2014-01-21 16:42:49 +00:00
Brian Barrett
fe093556f7 Only provide OPAL_THREAD_ADD64 if we have 64 bit atomics
This commit was SVN r30339.
2014-01-20 20:22:38 +00:00
Ralph Castain
26fbb4e77b Necessary constants for postgress module
This commit was SVN r30338.
2014-01-20 19:58:56 +00:00
Ralph Castain
12e4f8a71d Add support for postgres database
This commit was SVN r30337.
2014-01-20 19:56:26 +00:00
Ralph Castain
d2d4eeb2d6 Let the floating point pack/unpack work at arbitrary precision
cmr=v1.7.5:reviewer=rhc

This commit was SVN r30334.
2014-01-20 19:34:15 +00:00
Jeff Squyres
ab31428bd3 opal_path_nfs(): If we get EPERM, just give up.
Also fix the wording in a comment.

This is worth fixing, but not worth holding up 1.7.4.

cmr=v1.7.5:reviewer=rhc

This commit was SVN r30307.
2014-01-17 14:28:12 +00:00
Jeff Squyres
afb33b8de8 Bring down upstream hwloc 438d9ed7457888c63d29778bda56cd27c52a8d51 to
work around buggy NUMA node cpusets (i.e., buggy BIOSs).

Thanks to Jeff Becker for reporting the issue.

Submitted by Brice Goglin, reviewed by Jeff Squyres.

cmr=v1.7.4:reviewer=ompi-rm1.7

This commit was SVN r30306.
2014-01-17 13:49:56 +00:00
Ralph Castain
58479399c3 As per RFC and telecon, deprecate cmd line options and their corresponding MCA params for old-style mapping and binding directives
cmr=v1.7.5:reviewer=jsquyres:subject=deprecate old-style mapping and binding directives

This commit was SVN r30298.
2014-01-15 14:48:39 +00:00
Jeff Squyres
e3f818ba87 Remove a sketchy use of asprintf() passing a union by value.
The original code was passing a union by value, and doing odd things
on Solaris/SPARC (where "odd" rhymes with "SIGBUS").  Replace it with
an exploded switch/case block for all the enum values.  Also use the
string literals so that we get compiler checking of the format string
vs. the type of the actual arguments.

cmr=v1.7.4:revier=hjelmn:subject=Fix MCA base var to not pass union by value

This commit was SVN r30276.
2014-01-13 22:24:14 +00:00
Nathan Hjelm
91c4890886 MCA/base/var: Fix integer overflow check and add support for printing new
variable names for deprecated variables.

Closes trac:3270

cmr=v1.7.4:reviewer=jsquyres

This commit was SVN r30275.

The following Trac tickets were found above:
  Ticket 3270 --> https://svn.open-mpi.org/trac/ompi/ticket/3270
2014-01-13 20:29:56 +00:00
Jeff Squyres
9950471df7 Fixes for opal_path_nfs():
* Fix some typos in macro names.
 * Add case for OS's that have statfs() but no struct statfs (!).
 * Add case for NetBSD with struct statvfs.f_fstypename.

Many thanks to Paul Hargrove who developed the majority of this patch.

Reviewed by Jeff Squyres.

cmr=v1.7.4:reviewer=ompi-rm1.7

This commit was SVN r30255.
2014-01-11 01:07:10 +00:00
Jeff Squyres
962a14cf6d Pull upstream hwloc commit 5198d4c0fd6cae12756fb44aed16a2d4a58b1a25
Change the logic in bind.c to only include <malloc.h> if we don't have posix_memalign.
    
In http://www.open-mpi.org/community/lists/devel/2014/01/13619.php,
Paul Hargrove found a compiler warning on OpenBSD where <malloc.h>
exists, but is not intended to be used (and doesn't error out, so
AC_CHECK_HEADERS says its ok).

Reviewed by Brice Goglin.

cmr=v1.7.4:reviewer=ompi-rm1.7

This commit was SVN r30234.
2014-01-10 17:37:00 +00:00
Jeff Squyres
023c50e864 Fix typo in macro name (#$%@#$% defined-or-not macros!!)
Refs trac:4079

This commit was SVN r30206.

The following Trac tickets were found above:
  Ticket 4079 --> https://svn.open-mpi.org/trac/ompi/ticket/4079
2014-01-09 23:47:36 +00:00
Ralph Castain
fb9e427320 One last corner case - when encountering an overload condition (e.g., by comm_spawning more procs than we have cores) and we are using the default binding policy, do *not* bind the new procs to anything as this can cause major problems. Instead, let the spawn succeed since the user didn't specifically ask to be bound, and leave the new procs as unbound.
Refs trac:4077

This commit was SVN r30200.

The following Trac tickets were found above:
  Ticket 4077 --> https://svn.open-mpi.org/trac/ompi/ticket/4077
2014-01-09 22:39:34 +00:00
Jeff Squyres
c67c8e8187 Make the use of statfs()/statvfs() be more robust.
As noted by Paul Hargrove, the #if's surrounding the use of statfs()
and statvfs() in opal/util/path.c have apparently gotten stale (e.g.,
modern flavors of *BSD OSs no longer define __BSD).  Changes:

 * Add statfs and statvfs to the AC_CHECK_FUNCS in configure.ac
 * Add a sanity check to ensure that we have at least one of statfs()
   or statvfs().  Add a similar sanity check in opal/util/path.c, just
   as defensive programming.
 * Use AC_CHECK_MEMBERS in configure.ac to check for specific struct
   statfs/struct statvfs members that we use in opal/util/path.c
 * In path.c, add some #includes as listed on the OS man page for
   statfs(2) (OS X 10.8.5/Mountain Lion)
 * The previous code used statvfs() on Solaris and statfs() everywhere
   else.  Attempting to replicate this with behavior-based configure
   testing led to fairly complicted if/else logic, so the new code
   uses whichever of the two are available (i.e., it might actually
   use both -- OS X 10.8.5 and RHEL 6.5 have both statfs() and
   statvfs()).  The rationale here is that we don't really care which
   of the two functions report the answer; we'll take the answer
   regardless of where it comes from.  For example, if one function
   returns a failure and the other does not, we'll use the results
   from the successful function and ignore the failed one.

This new code seems to work on OS X and Linux.  We'll have to see what
happens with MTT and future Paul Hargrove testing...

cmr=v1.7.4:reviewer=ompi-rm1.7:subject=Make statfs/statvfs more robust

This commit was SVN r30198.
2014-01-09 21:28:52 +00:00
Ralph Castain
f179f2086b Do a better job of reporting bindings - if someone gives a spec that binds us to all processors, then we are effectively unbound and should report it clearly instead of outputting a long line of B's.
cmr=v1.7.4:reviewer=jsquyres:subject=Do a better job of reporting bindings

This commit was SVN r30179.
2014-01-09 16:16:16 +00:00
Ralph Castain
2b92fccfd1 Looks like this code was intended to separate Sun's vfs struct from everyone else's, yet the #elif can make it fail on some systems that actually support the capability. So just make it an #else to cover the range of systems we now support and move on.
cmr=v1.7.4:reviewer=jsquyres:subject=correct opal_path_df logic

This commit was SVN r30172.
2014-01-09 04:10:26 +00:00
Jeff Squyres
13b29cff2c This commit compliements/completes r30140. r30140 made all the
configury/Makefile.am changes; this commit renames the internal
installdirs.h framework struct field names to match the configry macro
names:

 * pkgdatdir ->	ompidatadir
 * pkglibdir -> ompilibdir
 * pkgincludedir -> ompiincludedir

This commit was SVN r30145.

The following SVN revision numbers were found above:
  r30140 --> open-mpi/ompi@8b778903d8
2014-01-07 23:36:33 +00:00
Brian Barrett
8b778903d8 Fix longstanding issue with our multi-project support. Rather than using
pkg{data,lib,includedir}, use our own ompi{data,lib,includedir}, which is
always set to {datadir,libdir,includedir}/openmpi.  This will keep us from
having help files in prefix/share/open-rte when building without Open MPI,
but in prefix/share/openmpi when building with Open MPI.

This commit was SVN r30140.
2014-01-07 22:11:15 +00:00
Jeff Squyres
cbc9ee5894 Refs trac:4038
Revert r30096 and use better precious variable names.

This commit was SVN r30132.

The following SVN revision numbers were found above:
  r30096 --> open-mpi/ompi@e0f6a4ef47

The following Trac tickets were found above:
  Ticket 4038 --> https://svn.open-mpi.org/trac/ompi/ticket/4038
2014-01-07 15:58:40 +00:00
Adrian Reber
d7ab0231e8 Cleanup trailing/heading whitespaces in COMPRESS/CRS MCA
This commit was SVN r30131.
2014-01-07 14:34:45 +00:00
Adrian Reber
015799c724 Fix COMPRESS/CRS MCA for C/R by returning correct value
Right now the C/R code fails because of a change introduced in
opal/mca/compress/base/compress_base_open.c and
pal/mca/crs/base/crs_base_open.c in 2013 with commit

git 734c724ff76d9bf814f3ab0396bcd9ee6fddcd1b
svn r28239

    Update OPAL frameworks to use the MCA framework system.

This commit changed a lot but also the return value of functions from
OPAL_SUCCESS to OPAL_ERR_NOT_AVAILABLE/OPAL_ERR_NOT_AVAILABLE.

This commit lets opal_compress_base_register() and opal_crs_base_open()
always return OPAL_SUCCESS and removes unneeded #includes.

This commit was SVN r30130.

The following SVN revision numbers were found above:
  r28239 --> open-mpi/ompi@365cf48db5
2014-01-07 14:16:54 +00:00
Jeff Squyres
9ba0d19ef1 Corrected patch from Tetsuya Mishima (i.e., a more correct fix than
r30086: make sure that a super item is constructed properly).

Refs trac:4035

This commit was SVN r30090.

The following SVN revision numbers were found above:
  r30086 --> open-mpi/ompi@d1c63f878e

The following Trac tickets were found above:
  Ticket 4035 --> https://svn.open-mpi.org/trac/ompi/ticket/4035
2013-12-26 12:41:39 +00:00
Ralph Castain
a8a91b374e Update component-level selection comments to match latest revisions
cmr=v1.7.4:reviewer=rhc

This commit was SVN r30087.
2013-12-25 19:12:43 +00:00
Ralph Castain
d1c63f878e Init variable to avoid infinite loop issues with PGI compilers
Thanks to Tetsuya Mishima for identifying the problem and providing the patch!

cmr=v1.7.4:reviewer=jsquyres:subject=Fix LAMA mapper for PGI compilers

This commit was SVN r30086.
2013-12-25 16:43:45 +00:00
Ralph Castain
65654325ef Continue the quest for valgrind silence - ensure that the db modules are given a chance to cleanup, and that the hash module releases all of its memory
cmr=v1.7.5:reviewer=jsquyres:subject=Silence db framework valgrind reports

This commit was SVN r30079.
2013-12-24 17:03:45 +00:00
Nathan Hjelm
3be4536d9b Cleanup various leaks in ompi_info reported by valgrind.
cmr=v1.7.4:reviewer=jsquyres

This commit was SVN r30058.
2013-12-23 17:47:43 +00:00
George Bosilca
24879f9def Code cleanup while chasing valgrind complaints.
This commit was SVN r30048.
2013-12-21 23:28:14 +00:00
George Bosilca
5aa0837250 Init all fields (valgrind cleanup).
This commit was SVN r30046.
2013-12-21 23:24:29 +00:00
George Bosilca
38cbaeaa82 Try to impose a little bit of consistency on how we parse lists of
modules by enforcing the use of OPAL list accessors.

This commit was SVN r30045.
2013-12-21 23:23:33 +00:00
Ralph Castain
31248c0985 Correctly add support for the "env" MPI_Info key during comm_spawn, update the "map-by", "rank-by", and "bind-to" Info key behaviors to match the new mapping/ranking/binding system, and update all docs and comments to match.
Fix comm_spawn on a single host - with the new default mapping scheme, we were incorrectly computing the number of procs to put on the node.

Refs trac:4003

This commit was SVN r30033.

The following Trac tickets were found above:
  Ticket 4003 --> https://svn.open-mpi.org/trac/ompi/ticket/4003
2013-12-20 20:42:39 +00:00
George Bosilca
178c340992 rearrange the fields to remove a gap in the datatype.
This commit was SVN r30020.
2013-12-20 15:57:56 +00:00
George Bosilca
7178492dd5 Correctly initialize and finalize all the datatype classes. No memory leaks on the
datatype engine subsists.

This commit was SVN r30019.
2013-12-20 15:57:10 +00:00
Jeff Squyres
802c89680a Protect hwloc/configure/m4's use of some temporary shell variables
Fix problem reported by Paul Hargrove:
http://www.open-mpi.org/community/lists/devel/2013/12/13519.php

cmr=v1.7.4:reviewer=brbarret

This commit was SVN r30013.
2013-12-20 14:48:40 +00:00
Ralph Castain
7cf0fc5578 One more round of sys_limit fixes...sigh
Refs trac:4010

This commit was SVN r30011.

The following Trac tickets were found above:
  Ticket 4010 --> https://svn.open-mpi.org/trac/ompi/ticket/4010
2013-12-20 14:44:51 +00:00
Ralph Castain
e49c16b975 Grrr....use #if instead of #ifdef
Refs trac:4010

This commit was SVN r30010.

The following Trac tickets were found above:
  Ticket 4010 --> https://svn.open-mpi.org/trac/ompi/ticket/4010
2013-12-20 14:24:26 +00:00
Ralph Castain
6e6351959d Check for all the RLIMIT_foo constants that we use, and update the limit checks to use the new #define values. Fix a bug where failure of some might lead to incorrect bracketing.
Refs trac:4010

This commit was SVN r30009.

The following Trac tickets were found above:
  Ticket 4010 --> https://svn.open-mpi.org/trac/ompi/ticket/4010
2013-12-20 14:09:43 +00:00