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4767 Коммитов

Автор SHA1 Сообщение Дата
Ralph Castain
8263efff65 Fix uninitialized variables
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-23 11:12:26 -07:00
Ralph Castain
ecacde0cd5 Purge whitespace errors
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-23 11:12:14 -07:00
Nathan Hjelm
b638612a98 Merge pull request #3744 from hjelmn/ompi_cov
opal: fix coverity issues
2017-06-23 09:09:42 -06:00
Nathan Hjelm
db973437e1 opal: fix coverity issues
Fixes coverity CIDs 1412984, and 1412983.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-06-23 08:15:34 -06:00
Nathan Hjelm
9c621ad5a4 opal/info: fix abstraction break
The new info infrastructure introduced an abstration break by
including mpi.h and using MPI_ constants in opal. This commit fixes
the break by changing the constants to their opal equivalents.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-06-23 08:03:01 -06:00
Ralph Castain
6ec2ad5288 Fix the pmix_query API when it asks for something that returns an array of pmix_info_t. Protect the PMIX_INFO_FREE macro from NULL arrays. Update the mpi_memprobe scaling test
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-22 20:11:36 -07:00
Nathan Hjelm
4252258338 Merge pull request #3721 from hjelmn/list_cleanup
opal: use opal_list_t convienience macros
2017-06-22 09:12:23 -06:00
Ralph Castain
3e78f84093 Silence Coverity warnings
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-21 13:19:51 -07:00
Ralph Castain
cba127bc43 Update the ext2x component to match the internal one
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-20 11:42:14 -07:00
Nathan Hjelm
ffd8ee2dfd opal: use opal_list_t convienience macros
This commit cleans up code in opal to use OPAL_LIST_FOREACH(_SAFE),
OPAL_LIST_DESTRUCT, and OPAL_LIST_RELEASE.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-06-20 12:37:12 -06:00
Ralph Castain
814e858082 Merge pull request #3696 from rhc54/topic/pmix3
Update PMIx and integration glue
2017-06-20 10:38:29 -07:00
Ralph Castain
952726c121 Update to latest PMIx master - equivalent to 2.0rc2. Update the thread support in the opal/pmix framework to protect the framework-level structures.
This now passes the loop test, and so we believe it resolves the random hangs in finalize.

Changes in PMIx master that are included here:

* Fixed a bug in the PMIx_Get logic
* Fixed self-notification procedure
* Made pmix_output functions thread safe
* Fixed a number of thread safety issues
* Updated configury to use 'uname -n' when hostname is unavailable

Work on cleaning up the event handler thread safety problem
Rarely used functions, but protect them anyway
Fix the last part of the intercomm problem
Ensure we don't cover any PMIx calls with the framework-level lock.
Protect against NULL argv comm_spawn

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-20 09:02:15 -07:00
KAWASHIMA Takahiro
3afc61644d opal/util: Get rid of \0 from abort delay message
My recent commit 6b91edd had this bug.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2017-06-19 20:08:34 +09:00
Ralph Castain
8f09929469 Fix rank-file mapper launch by correctly setting up the remote map from the provided data
Put a simple protection for the case where procs fail while we are trying to deregister handlers

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-15 08:33:29 -07:00
KAWASHIMA Takahiro
b5b6b22848 Merge pull request #3678 from kawashima-fj/pr/signal-abort-delay
Apply `opal_abort_delay` to the OPAL signal handler
2017-06-12 10:35:11 +09:00
Ralph Castain
548cd24e4e Forward-port changes proposed for v3.0 to master from PR #3677
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-09 07:51:21 -07:00
KAWASHIMA Takahiro
362445d486 Use same prefix format for [host:pid]
Hostname and PID are output as a message prefix in many places in
our code. Their printf-formats were either `[%s:%d]` or `[%s:%05d]`.
This commit changes `[%s:%d]` to `[%s:%05d]`. The latter was more
widely used in our code (including OPAL output system and the signal
handler).

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2017-06-08 19:35:03 +09:00
KAWASHIMA Takahiro
6b91eddc8b Apply opal_abort_delay to the signal handler
This commit expands the effect of the MCA parameter `opal_abort_delay`
to the OPAL signal handler. This allows attaching of a debugger on
segmentation fault etc. before quitting the job.

The sleep code is moved to the `opal_delay_abort` function from the
`ompi_mpi_abort` and `oshmem_shmem_abort` functions for code cleanup.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2017-06-08 19:34:48 +09:00
Nathan Hjelm
f038fe6427 Merge pull request #3661 from jjhursey/fix/ppc-wmb
atomics/powerpc: Fix WMB instruction
2017-06-07 12:14:20 -06:00
Ralph Castain
c9a0fd3d3f Merge pull request #3666 from rhc54/topic/extpmix
Correct the external pmix configury
2017-06-07 06:21:36 -07:00
Ralph Castain
2d65908184 Correct the external pmix configury
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-07 00:33:29 -07:00
Ralph Castain
ea5649d381 Merge pull request #3665 from rhc54/topic/trivial
Add missing constant to error-strings
2017-06-07 00:09:30 -07:00
Ralph Castain
bd1793ad17 Get the pmix/ext2x component to work. Fix a minor problem in the libevent external component.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-06 20:06:28 -07:00
Ralph Castain
acd60a2cc4 Add missing constant to error-strings
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-06 16:10:52 -07:00
Ralph Castain
c3e6dc2022 Update to pmix v2.0.0rc1, including thread safety fixes
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-06 15:16:34 -07:00
Joshua Hursey
4796193cdb atomics/powerpc: Fix WMB instruction
* `lwsync` is a write memory barrier.
    - `eieio` is really not meant for this type of operation.
 * `lwsync` can also be used for the read memory barrier according to
   my reading of the of the Power 8 ISA docs (v2.07)
    - https://www-01.ibm.com/marketing/iwm/iwm/web/reg/download.do?source=swg-opower&S_PKG=dl&lang=en_US&cp=UTF-8
 * References https://github.com/pmix/pmix/pull/391

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-06-06 16:41:37 -05:00
Ralph Castain
93cf3c7203 Update OPAL and ORTE for thread safety
(I swear, if I look this over one more time, I'll puke)

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-06 12:30:57 -07:00
Ralph Castain
2f85d10600 Update to PMIx master
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-06 08:19:25 -07:00
George Bosilca
ba46b35515
Dont assume a size for constants with UL and ULL.
According to Section 6.4.4.1 of the C, we do not need to prepend a type
to a constant to get the right size. The compiler will infer the type
according to the number of bits in the constant.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2017-06-05 22:07:53 -04:00
Ralph Castain
594c0e2876 Retain the max terminal length of 78 characters, replace the word "disabled" with a simple "-" and hope people know what that means
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-05 07:10:05 -07:00
Ralph Castain
8f526968c2 Do not hang if we cannot relay messages. Eliminate extra error log message
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-05 06:35:19 -07:00
Ralph Castain
e25a051f41 Change the default sizes for opal_info output
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-06-04 20:30:53 -07:00
Ralph Castain
9d6b929894 Fix uninitialized variable. Set exit codes for failed launch so we get pretty error messages
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-31 07:38:37 -07:00
Ralph Castain
26d96061aa Roll in latest PMIx updates
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-30 21:35:35 -07:00
Ralph Castain
9f1f9d6606 Update to PMIx v2.0.0rc1
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-28 10:30:58 -07:00
Ralph Castain
9f60cd0fe7 Update the connect/accept support so we check to see if we have the proper infrastructure and RTE support, including whether we have ompi-server available if the connect/accept spans multiple applications. Print pretty help messages in all cases where we do not have support
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-27 10:47:08 -07:00
Nathan Hjelm
33d59886e1 Merge pull request #3587 from hjelmn/event_abstraction
pmix/pmix2x: fix errors in event abstration
2017-05-26 10:44:18 -06:00
Nathan Hjelm
a512b8962d pmix/pmix2x: fix errors in event abstration
Parts of the pmix2x component called the event_* functions directly
instead of the opal_event_* wrappers. This is fine as long as we are
using libevent but becomes a problem with other event libraries.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-05-26 09:49:11 -06:00
Ralph Castain
2f721a3366 Merge pull request #3585 from rhc54/topic/pmix20
Update to pmix v2.0beta
2017-05-26 06:05:44 -07:00
Ralph Castain
e1e264711a Update to pmix v2.0beta
Fix atomics - again
Fix initialization of notification ring buffer
Fix wait_sync definitions

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-26 03:33:18 -07:00
Ralph Castain
657e701c65 Add debug verbosity to the orte data server and pmix pub/lookup functions
Start updating the various mappers to the new procedure. Remove the stale lama component as it is now very out-of-date. Bring round_robin and PPR online, and modify the mindist component (but cannot test/debug it).

Remove unneeded test

Fix memory corruption by re-initializing variable to NULL in loop

Resolve the race condition identified by @ggouaillardet by resetting the
mapped flag within the same event where it was set. There is no need to
retain the flag beyond that point as it isn't used again.

Add a new job attribute ORTE_JOB_FULLY_DESCRIBED to indicate that all the job information (including locations and binding) is included in the launch message. Thus, the backend daemons do not need to do any map computation for the job. Use this for the seq, rankfile, and mindist mappers until someone decides to update them.

Note that this will maintain functionality, but means that users of those three mappers will see large launch messages and less performant scaling than those using the other mappers.

Have the mindist module add procs to the job's proc array as it is a fully described module

Protect the hnp-not-in-allocation case

Per path suggested by Gilles - protect the HNP node when it gets added in the absence of any other allocation or hostfile

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-05-25 18:41:27 -07:00
Josh Hursey
facd6d6b33 Merge pull request #3563 from jjhursey/fix/opal-stderr
opal/stacktrace: Fix stderr target for opal_stacktrace_output
2017-05-23 08:53:31 -05:00
Joshua Hursey
fce28c31d0 opal/stacktrace: Fix stderr target for opal_stacktrace_output
Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-05-22 13:46:02 -05:00
Thananon Patinyasakdikul
bf7534d32c btl/usnic: changed fi_ep_bind flags for AV from NULL to 0 due to
compiler warning.

This commit fixed compiler warning generated from earlier commit :
ddbe1726c5d19cddbb5754a6d4a20bf2a5966654

Signed-off-by: Thananon Patinyasakdikul <apatinya@cisco.com>
2017-05-22 10:09:43 -07:00
Geoff Paulsen
50f9287c03 Merge pull request #2941 from markalle/pr/mpi-info-update2
Finally Merging this in.  MPI_*_get_info/set_info().
Targeting v3.1 release.  @hjelmn were you interested in switching some internal pieces to begin using this?  Should we target v3.1 (or whatever we call the Oct 15th release?)
2017-05-22 09:22:04 -05:00
Jeff Squyres
ddbe1726c5 Merge pull request #3539 from thananon/usNIC_fi_ep_bind
usNIC: fix fi_ep_bind flag. FI_RECV should not be associated with address vector.
2017-05-17 06:25:23 -04:00
Gilles Gouaillardet
c4f64c39d1 Merge pull request #3526 from ggouaillardet/topic/unpack_hetero
opal/datatype: do not compute ptypes for OPAL predefined datatypes
2017-05-17 14:35:49 +09:00
Mark Allen
482d84b6e5 fixes for Dave's get/set info code
The expected sequence of events for processing info during object creation
is that if there's an incoming info arg, it is opal_info_dup()ed into the obj
at obj->s_info first. Then interested components register callbacks for
keys they want to know about using opal_infosubscribe_infosubscribe().

Inside info_subscribe_subscribe() the specified callback() is called with
whatever matching k/v is in the object's info, or with the default. The
return string from the callback goes into the new k/v stored in info, and
the input k/v is saved as __IN_<key>/<val>. It's saved the same way
whether the input came from info or whether it was a default. A null return
from the callback indicates an ignored key/val, and no k/v is stored for
it, but an __IN_<key>/<val> is still kept so we still have access to the
original.

At MPI_*_set_info() time, opal_infosubscribe_change_info() is used. That
function calls the registered callbacks for each item in the provided info.
If the callback returns non-null, the info is updated with that k/v, or if
the callback returns null, that key is deleted from info. An __IN_<key>/<val>
is saved either way, and overwrites any previously saved value.

When MPI_*_get_info() is called, opal_info_dup_mpistandard() is used, which
allows relatively easy changes in interpretation of the standard, by looking
at both the <key>/<val> and __IN_<key>/<val> in info. Right now it does
  1. includes system extras, eg k/v defaults not expliclty set by the user
  2. omits ignored keys
  3. shows input values, not callback modifications, eg not the internal values

Currently the callbacks are doing things like
    return some_condition ? "true" : "false"
that is, returning static strings that are not to be freed. If the return
strings start becoming more dynamic in the future I don't see how unallocated
strings could support that, so I'd propose a change for the future that
the callback()s registered with info_subscribe_subscribe() do a strdup on
their return, and we change the callers of callback() to free the strings
it returns (there are only two callers).

Rough outline of the smaller changes spread over the less central files:
  comm.c
    initialize comm->super.s_info to NULL
    copy into comm->super.s_info in comm creation calls that provide info
    OBJ_RELEASE comm->super.s_info at free time
  comm_init.c
    initialize comm->super.s_info to NULL
  file.c
    copy into file->super.s_info if file creation provides info
    OBJ_RELEASE file->super.s_info at free time
  win.c
    copy into win->super.s_info if win creation provides info
    OBJ_RELEASE win->super.s_info at free time

  comm_get_info.c
  file_get_info.c
  win_get_info.c
    change_info() if there's no info attached (shouldn't happen if callbacks
      are registered)
    copy the info for the user

The other category of change is generally addressing compiler warnings where
ompi_info_t and opal_info_t were being used a little too interchangably. An
ompi_info_t* contains an opal_info_t*, at &(ompi_info->super)

Also this commit updates the copyrights.

Signed-off-by: Mark Allen <markalle@us.ibm.com>
2017-05-17 01:12:49 -04:00
Thananon Patinyasakdikul
a705f2cf7b usNIC: fix fi_ep_bind flag. FI_RECV should not be associated with av.
Signed-off-by: Thananon Patinyasakdikul <tpatinya@utk.edu>
2017-05-16 18:22:28 -04:00
Jeff Squyres
23325c31d3 Merge pull request #3338 from jjhursey/topic/ompi_info_show_failed
`ompi_info --show-failed` feature
2017-05-16 17:08:43 -04:00