ports/openmpi
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Aurélien Bouteiller
7f65c2b18e forgot to update copyright in commits 627a89b 4899c89 2016-05-13 11:34:59 -04:00
George Bosilca
37e03e3e5b Don't update req_bytes_received if no bytes were received. 2016-05-12 23:39:32 -04:00
Gilles Gouaillardet
456b73da69 btl/openib: fix error path in init_one_device() 
do not explicitly release ib verbs components since they will
be released in the object destructor

Thanks Durga for the report
 2016-05-13 09:03:48 +09:00
rhc54
4d026e223c Merge pull request #1661 from matcabral/master 
PSM and PSM2 MTLs to detect drivers and link
 2016-05-11 17:43:17 -07:00
Matias A Cabral
40717198c6 add glob.h check fro psm and psm2 mtls 2016-05-11 13:05:43 -07:00
George Bosilca
f8facb177d atomically update the refcount on the datatype args. 2016-05-11 12:40:18 -04:00
rhc54
055a3add73 Merge pull request #1667 from rhc54/topic/pmixext 
Ensure we fail to configure if external PMIx was requested and is not found.
 2016-05-11 08:56:16 -07:00
Ralph Castain
9a5ef60602 Ensure we fail to configure if external PMIx was requested and is not found. 2016-05-11 07:59:05 -07:00
Matias A Cabral
528abff6ae Merge remote-tracking branch 'upstream/master' 2016-05-10 15:42:08 -07:00
Jeff Squyres
30f913f217 Merge pull request #1652 from jsquyres/pr/remove-aix-timer 
timer/aix: remove stale code
 2016-05-10 15:47:02 -04:00
Jeff Squyres
5aa38cc300 Merge pull request #1644 from ggouaillardet/topic/two_proc_algo_error 
coll/tuned: two_proc algo errors when forced on comm size > 2
 2016-05-10 11:54:15 -04:00
Jeff Squyres
3706c955cc Merge pull request #1663 from jsquyres/pr/hwloc-wrapper-extra-flags-fix 
hwloc/external: set WRAPPER_EXTRA_* vars in proper location
 2016-05-10 11:51:33 -04:00
Jeff Squyres
eccf0ff4cd hwloc/external: set WRAPPER_EXTRA_* vars in proper location 
WRAPPER_EXTRA flags are checked *before* the POST_CONFIG macro is
invoked.  So set them in the main CONFIG macro.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-05-10 07:34:56 -07:00
Gilles Gouaillardet
ef3ee027b0 autogen: patch configure in order to correctly detect Solaris Studio 12.5 beta compilers 
previously: f90: Sun Fortran 95 8.7 Linux_i386 2014/10/20
now : Studio 12.5 Fortran 95 8.8 Linux_i386 Beta 2015/11/17
note the "Sun" branding has gone

Thanks Paul Hargrove for the report and the patch
 2016-05-10 16:28:33 +09:00
Matias A Cabral
d28ee62a96 Update in PSM and PSM2 MTLs to detect entries created by drivers for 
Intel TrueScale and Intel OmniPath, and detect a link in ACTIVE state.
This fix addresses the scenario reported in the below OMPI users email,
including formerly named Qlogic IB, now Intel True scale. Given the
nature of the PSM/PSM2 mtls this fix applies to OmniPath:
https://www.open-mpi.org/community/lists/users/2016/04/29018.php
 2016-05-09 12:08:44 -07:00
Josh Hursey
44d95cb610 Merge pull request #1657 from bgoglin/hwloc-for-2.0 
configure: check the actual may_alias syntax that we use
 2016-05-09 13:37:08 -05:00
Ralph Castain
7767882346 Per user request, add some missing data and definitions: 
OPAL_PMIX_UNIV_RANK - synonym for OPAL_PMIX_GLOBAL_RANK
OPAL_PMIX_APP_SIZE - #ranks in the application of this proc
 2016-05-09 08:39:01 -07:00
Gilles Gouaillardet
0a19337371 coll/base: return MPI_ERR_UNSUPPORTED_OPERATION when coll_base_*_two_procs algo is used on a communicator that has no two tasks 
Thanks Dave Love for the report
 2016-05-09 14:18:40 +09:00
Brice Goglin
6839d928c2 configure: check the actual may_alias syntax that we use 
xlc 13.1.0 crashes because of our may_alias attributes in nolibxml.c
on Power7. libxml.c and nolibxml.c are the only may_alias users for now,
so change our configure check to match the actual code using it.

Thanks to Paul Hargrove for reporting and debugging the issue,
and providing the patch.

https://www.open-mpi.org/community/lists/devel/2016/05/18918.php

(cherry picked from open-mpi/hwloc@0ab7af5e90)
 2016-05-08 22:22:30 +02:00
Ralph Castain
1911d74095 Prevent segfault when -debug given to mpirun 2016-05-08 10:19:05 -07:00
Ralph Castain
7594b95e4b Ensure the hwloc external header is include when --with-devel-headers is given 2016-05-08 10:18:14 -07:00
Nathan Hjelm
b110f76c8e Merge pull request #1653 from jsquyres/pr/fix-memory-patcher-sys-syscall-h 
memory/patcher: check for <sys/syscall.h>
 2016-05-08 04:03:17 -06:00
Jeff Squyres
acbd2c608d memory/patcher: check for <sys/syscall.h> 
Thanks to Paul Hargrove for reporting.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-05-07 09:48:14 -07:00
Jeff Squyres
b4982d7725 timer/aix: remove stale code 
Per discussion on the mailing list and with IBM, remove the AIX timer
code (since AIX is no longer supported).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-05-07 09:31:34 -07:00
rhc54
58de86e1a5 Merge pull request #1651 from rhc54/topic/op86 
Remove stale component - I'm not going to get to it
 2016-05-07 07:49:50 -07:00
Ralph Castain
6b24e2779b Remove stale component - I'm not going to get to it 2016-05-07 04:13:34 -07:00
rhc54
2839484737 Merge pull request #1649 from rhc54/topic/env 
Fix the env_list support - the MCA param was being set way too early,…
 2016-05-06 16:51:36 -07:00
Ralph Castain
7e5ef6a240 Fix the env_list support - the MCA param was being set way too early, so provide a "backdoor" way of providing the value 2016-05-06 15:38:39 -07:00
rhc54
6311f86939 Merge pull request #1648 from rhc54/topic/repair 
Repair the processing of cmd line options that mapped to MCA params.
 2016-05-06 14:39:23 -07:00
Ralph Castain
58dd41facf Repair the processing of cmd line options that mapped to MCA params. This was responsible for breaking things like map-by <foo>. 
Remove debug, let orterun send terminate cmd to DVM

Recover the DVM support
 2016-05-06 13:14:03 -07:00
Edgar Gabriel
def1b95fd7 Merge pull request #1646 from edgargabriel/getview-preallocate-fixes 
io/ompio: file_getview and file_preallocate fixes
 2016-05-06 11:46:00 -05:00
Edgar Gabriel
e65e189671 io/ompio: fix file size after file_preallocate 
Thanks for @dalcini for reporting
Fixes open-mpi/ompi#1633
 2016-05-06 08:20:59 -05:00
Edgar Gabriel
d358965134 io/ompio: fix envelope of datatype returned by getview 
Thanks for @dalcini for reporting
Fixes open-mpi/ompi#1632
 2016-05-06 08:19:48 -05:00
Edgar Gabriel
7c92acaa78 Merge pull request #1637 from edgargabriel/pr/netbsd-compilation-problems 
fs/lustre and fs/pvfs2: fix netbsd compilation problems
 2016-05-06 08:05:36 -05:00
Josh Hursey
35ae7e33d7 Merge pull request #1639 from jjhursey/topic/dl-open-null-fname 
dl/dlopen/libltdl: Allow opal_dl_open to take a NULL filename.
 2016-05-05 22:15:46 -05:00
Ralph Castain
8ec1891d11 Silence warning 2016-05-05 20:04:10 -07:00
Jeff Squyres
810db734c4 Merge pull request #1640 from jsquyres/pr/mpir-cleanup 
debuggers: remove some useless code
 2016-05-05 21:23:30 -04:00
Gilles Gouaillardet
6c9d65c0ca coll/libnbc: fix MPI_Ireduce_scatter_block for one task communicator 
Thanks Lisandro Dalcin for the report

Fixes open-mpi/ompi#248
 2016-05-06 09:43:29 +09:00
rhc54
7a9b0bbf9f Merge pull request #1641 from rhc54/topic/cleanse 
Some minor cleanups of warnings from gcc 6.0.0. Update s1/s2 pmix to …
 2016-05-05 16:23:07 -07:00
Ralph Castain
08022d7af1 Some minor cleanups of warnings from gcc 6.0.0. Update s1/s2 pmix to get max_procs as required. 2016-05-05 15:28:13 -07:00
Jeff Squyres
83c2d04aa3 debuggers: remove some useless code 
MPIR-1.0 specifies that the following symbols are only relevant in the
starter process:

- MPIR_Breakpoint
- MPIR_being_debugged
- MPIR_debug_state
- MPIR_debug_abort_string

I.e., the code filling in values in these various symbols was useless
/ never used.

MPIR-1.1 will define that MPIR_being_debugged *is* relevant in MPI
processes.  That symbol is currently defined in libopen-rte (which is
currently causing a duplicate symbol error for static builds -- this
commit fixes that error), and is therefore still available for MPI
processes.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-05-05 14:22:55 -07:00
Joshua Hursey
677178f206 dl/dlopen/libltdl: Allow opal_dl_open to take a NULL filename. 2016-05-05 17:07:26 -04:00
Jeff Squyres
f6fd676cad Merge pull request #1638 from jsquyres/pr/ompi-file-info-fix 
ompio: always return valid info from FILE_GET_INFO
 2016-05-05 16:08:07 -04:00
Jeff Squyres
f167be1c91 ompio: always return valid info from FILE_GET_INFO 
MPI-3.1 says that even if no info keys are set on the file, we need to
return a new, empty info.

Thanks to Lisandro Dalcin for identifying the issue.

Fixes open-mpi/ompi#1630

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-05-05 12:03:29 -07:00
Aurélien Bouteiller
4899c89731 Fix a race condition when multiple threads try to create a bml endpoint simultaneously. 2016-05-05 10:49:30 -04:00
Aurélien Bouteiller
627a89bf71 Fix a race condition when multiple threads do the "first send" to an endpoint simultaneously. 2016-05-05 09:04:10 -04:00
Nathan Hjelm
80f45925bc Merge pull request #1629 from hjelmn/new_hooks_update 
New hooks update
 2016-05-04 18:53:25 -06:00
Joshua Hursey
788cf1a9fe asm/powerpc: Fix empty colon list in asm for XL compiler on power 
Thanks to Paul Hargrove for reporting the problem, and submitting patch.
 * https://www.open-mpi.org/community/lists/devel/2016/05/18886.php
 2016-05-04 14:14:33 -05:00
Nathan Hjelm
ff2a54bd37 patcher/linux: code cleanup 
Update based on cleanup made to the upstream version on OpenUCX.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-05-04 12:53:45 -06:00
Nathan Hjelm
6c9a0e1c55 patcher/overwrite: disable ia64 support for now 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-05-04 12:53:24 -06:00