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Ralph Castain
747253ba00 Protect against infinite loops 
Flag that we provided a notification and ignore it if it attempts to come back up.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
(cherry picked from commit ea0d70bc9396def61545e2ce492a55c4c3aa7772)
 2018-07-19 13:56:30 -07:00
Ralph Castain
8a6dc0b211
Merge pull request #5456 from rhc54/topic/px 
Default to internal PMIx if newer than external
 2018-07-19 11:53:47 -07:00
Ralph Castain
1e6aaf7f22 Default to internal PMIx if newer than external 
Per https://github.com/open-mpi/ompi/issues/5031, if the user didn't specify a particular PMIx installation, then default back to the internal version if it is newer than the discovered external one. PMIx doesn't yet provide a full signature so we have to just get as close as possible for now.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2018-07-19 11:02:03 -07:00
Yossi Itigin
bdb6ece3dd
Merge pull request #5452 from hoopoepg/topic/osc-ucx-fox-hang 
OSC/UCX: fixed hang on OSC init
 2018-07-19 13:57:51 +03:00
Sergey Oblomov
fa33e322e7 OSC/UCX: code deduplication 
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2018-07-19 12:39:15 +03:00
Sergey Oblomov
6f0a7a2005 OSC/UCX: opal progress register/unregister optimization 
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2018-07-19 12:07:26 +03:00
Yossi Itigin
29812494f2
Merge pull request #5402 from hoopoepg/topic/common-del-procs 
MCA/COMMON/UCX: del_procs calls are unified to common module
 2018-07-19 11:19:45 +03:00
Sergey Oblomov
55b934bacf OSC/UCX: enable progress when at least one window is allocated 
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2018-07-18 17:52:30 +03:00
Sergey Oblomov
a081fba046 OSC/UCX: fixed hang on OSC init 
- there worked progress was missed on startup which caused hang
  on one of ranks

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2018-07-18 17:01:53 +03:00
Edgar Gabriel
b6b9552ca9
Merge pull request #5444 from gbossu/fix-file-delete 
io/ompio: Call component-specific file_delete function instead of POSIX unlink
 2018-07-18 08:45:57 -05:00
Sergey Oblomov
920cc2e0d9 MCA/COMMON/UCX: del_procs calls are unified to common module 
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2018-07-18 07:37:25 +03:00
Howard Pritchard
4447738098
Merge pull request #5414 from hppritcha/topic/iwarp_only_by_default 
btl/openib: only look for iwarp/roce by default
 2018-07-17 20:08:00 -06:00
Howard Pritchard
bc8134dae1
Merge pull request #5448 from thananon/ofi_context 
btl/ofi: Added FI_CONTEXT as requirement.
 2018-07-17 19:51:13 -06:00
Howard Pritchard
6818272392 btl/openib: only look for iwarp/roce by default 
Due to decreasing support by vendors/other orgs for the OpenIB BTL,
only look for iWarp/RoCE devices by default.  Allow IB HCAs
with ports configured for ethernet.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2018-07-17 19:11:37 -06:00
Gilles Gouaillardet
fed1e7766e
Merge pull request #5430 from ggouaillardet/pr/pcollreq-fort 
mpiext/pcollreq: add Fortran bindings
 2018-07-18 09:52:59 +09:00
Howard Pritchard
9ac84a92a2
Merge pull request #5449 from jladd-mlnx/topic/oshmem-bump-to-v1.4 
OSHMEM Specification version: Bump to v1.4
 2018-07-17 16:39:21 -06:00
Joshua Ladd
7bfcd4545d OSHMEM Specification version: Bump to v1.4 
Signed-off-by: Joshua Ladd <jladd.mlnx@gmail.com>
 2018-07-18 00:23:24 +03:00
Joshua Ladd
3add13c72e
Merge pull request #5441 from hoopoepg/topic/ucx-memhooks-to-common-module 
MCA/COMMON/UCX: shift opal memhooks into common UCX
 2018-07-17 15:52:44 -04:00
Thananon Patinyasakdikul
033c364ee0 btl/ofi: Added FI_CONTEXT as requirement. 
OFI BTL uses context for completion but never ask for it in
fi_getinfo(3). This commit makes sure that we always ask for FI_CONTEXT
to eliminate any potential error.

Signed-off-by: Thananon Patinyasakdikul <thananon.patinyasakdikul@intel.com>
 2018-07-17 12:18:43 -07:00
Matias Cabral
be3cb01cb4
Merge pull request #5397 from nrspruit/ns_ofi_mtl_ssend 
MTL OFI: Redesign sync send with reduced tag bits and quick ack
 2018-07-17 10:14:33 -07:00
Sergey Oblomov
a4b8253fa2 MCA/COMMON/UCX: fixed initialization of malloc hooks 
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2018-07-17 20:09:50 +03:00
Gaëtan Bossu
8522ba112c MCA/IO/OMPIO: fix MPI_File_delete implementation. 
OMPIO now uses the correct delete function depending on the fs

mca_common_ompio_file_delete now works this way instead
of calling POSIX unlink:
 - create a minimal file handle with the given file name
 - select the best fs component using this file handle
 - call the component-specific file delete function

Signed-off-by: Gaëtan Bossu <gbossu@ddn.com>
 2018-07-17 18:17:13 +02:00
Gaëtan Bossu
ac6f75e3d1 MCA/FS: check communicator validity in query functions 
It is needed because the fs components might be queried due to a MPI_File_delete call.
And in this case, we don't have a communicator value.

Signed-off-by: Gaëtan Bossu <gbossu@ddn.com>
 2018-07-17 18:16:21 +02:00
Josh Hursey
9aa5168795
Merge pull request #5353 from ggouaillardet/topic/romio321_grequests 
io/romio321: make grequest extensions internal
 2018-07-17 10:53:53 -05:00
Gilles Gouaillardet
1a41482720 coll/libnbc: do not recursively call opal_progress() 
instead of invoking ompi_request_test_all(), that will end up
calling opal_progress() recursively, manually check the status
of the requests.

the same method is used in ompi_comm_request_progress()

Refs open-mpi/ompi#3901

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-07-17 09:45:08 -06:00
Sergey Oblomov
1c7ae22dfb MCA/COMMON/UCX: shift opal memhooks into common UCX 
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2018-07-17 13:46:38 +03:00
Yossi Itigin
9a8797a6be
Merge pull request #5440 from hoopoepg/topic/atomic-fix-build-issue 
ATOMIC: fixed build issues (incorrect function proto)
 2018-07-17 12:21:39 +03:00
Sergey Oblomov
36cc69d47a ATOMIC: fixed build issues (incorrect function proto) 
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2018-07-17 10:32:15 +03:00
Gilles Gouaillardet
47351b7fac mpiext/pcollreq: Add Fortran use-mpi-f08 bindings 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-07-17 16:29:41 +09:00
Kurita, Takehiro
73e038ec18 mpiext/pcollreq: Add Fortran use-mpi bindings 
Signed-off-by: Kurita, Takehiro <fj6370fp@aa.jp.fujitsu.com>
 2018-07-17 16:29:41 +09:00
Gilles Gouaillardet
9e0115c980 mpiext/pcollreq: Add Fortran mpif-h bindings 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-07-17 16:29:33 +09:00
Gilles Gouaillardet
44110a575d mpiext/pcollreq: do include PMPIX_* subroutines to C bindings 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-07-17 16:29:33 +09:00
KAWASHIMA Takahiro
2ac08ddfb6
Merge pull request #5435 from kawashima-fj/pr/fortran-iscatter-inplace 
mpi/fortran: Fix IN_PLACE detection of ISCATTER(V)
 2018-07-17 15:07:47 +09:00
KAWASHIMA Takahiro
5ddf0f6418 mpi/fortran: Fix IN_PLACE detection of ISCATTER(V) 
Blocking `MPI_SCATTER` and `MPI_SCATTERV` were fixed in 506d0e96f4
but noblocking `MPI_ISCATTER` and `MPI_ISCATTERV` were not fixed yet.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
 2018-07-17 14:15:21 +09:00
Joshua Ladd
1f4829b874
Merge pull request #5265 from xinzhao3/topic/openshmem-v1.4 
OMPI/OSHMEM: add new functionality of OpenSHMEM v1.4.
 2018-07-16 17:37:42 -04:00
Xin Zhao
c429900cd9 OMPI/OSHMEM: add new functionality of OpenSHMEM v1.4. 
Signed-off-by: Xin Zhao <xinz@mellanox.com>
 2018-07-16 12:55:25 -07:00
Yossi Itigin
9d0b3a42aa
Merge pull request #5423 from hoopoepg/topic/bitwise-atomics-renaming 
ATOMICS: renamed atomic calls to unsigned datatypes
 2018-07-16 19:08:02 +03:00
Mikhail Kurnosov
ba83cc91eb coll/base: add MPI_Bcast based on a binomial tree scatter followed by a ring allgather 
Implements MPI_Bcast using a binomial tree scatter followed by a ring allgather.

Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
 2018-07-16 08:56:09 -06:00
Sergey Oblomov
da1afcaaaf ATOMIC/UCX: fixed typo in datatype macro 
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2018-07-16 14:49:06 +03:00
Yossi Itigin
27b91d7564
Merge pull request #5425 from hoopoepg/topic/atomic-mxm-abstraction-viola-master 
ATOMIC/MXM: fixed abstraction violation
 2018-07-15 10:51:29 +03:00
Gilles Gouaillardet
99e0f96155
Merge pull request #5413 from ggouaillardet/topic/pcollreq 
mpiext/pcollreq: check subroutine parameters and add profiling symbols
 2018-07-14 15:02:02 +09:00
Gilles Gouaillardet
61b3308871 mpiext/pcollreq: check subroutine parameters and add profiling symbols 
- check subroutine parameters
 - implement PMPIX_* subroutines

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-07-14 14:14:37 +09:00
Gilles Gouaillardet
dec1663364 spc: add missing subroutines 
add counters for :
 - MPI_Exscan
 - MPI_Iexscan
 - MPI_Igatherv

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-07-14 14:14:37 +09:00
Ralph Castain
9831145020
Merge pull request #5427 from rhc54/topic/px 
Remove the PMIx ext4x component
 2018-07-13 20:43:09 -07:00
Ralph Castain
4a596d35f7 Remove the PMIx ext4x component 
Update configury to redirect anything at or above v3 to the ext3x component

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2018-07-13 19:51:50 -07:00
Howard Pritchard
9a5fd48388
Merge pull request #5079 from jsquyres/pr/fortran-is-the-devil 
status_set_cancelled: fix F08 binding
 2018-07-13 15:36:02 -05:00
Joshua Ladd
b12868239c
Merge pull request #4765 from xinzhao3/topic/osc-ucx-mem-hook 
OMPI/OSC/UCX: move memory hooks init in osc to win creation.
 2018-07-13 09:36:20 -04:00
Sergey Oblomov
bd84165277 ATOMICS: renamed atomic calls to unsigned datatypes 
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2018-07-13 15:32:16 +03:00
Sergey Oblomov
d51426ff0a ATOMIC/MXM: fixed abstraction violation 
- applied workaround for incorrect dynamic module dependency

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
 2018-07-13 14:30:12 +03:00
Xin Zhao
74ef51af1b OMPI/OSC/UCX: move memory hooks init in osc to win creation. 
Move memory hooks init (for request based operation) in osc ucx to window
creation time, to avoid performance issue in MPI initialization.

Signed-off-by: Xin Zhao <xinz@mellanox.com>
 2018-07-12 15:03:02 -07:00