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Howard Pritchard
f5c43c1185 mtl/ofi: retain inline progress function 
Retain inline progress function for ofi
mtl, but have a non-inlined progress function
which is registered with the opal progress
mechanism.

 @jithinjosepkl

I've bad news about the psm provider.  I still notice
segfaults - not always - but frequently at finalize
when using the psm provider.  I don't notice this
when using the sockets provider.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-07-27 09:16:52 -06:00
Nathan Hjelm
579e43ffed Merge pull request #750 from bosilca/topic/pvar_update 
Topic/pvar update
 2015-07-27 08:55:09 -06:00
Gilles Gouaillardet
9c77c6b66d fortran: fix f08 bindings 
only define the unique fortran symbol depending on
 - CAPS
 - PLAIN
 - SINGLE_UNDERSCORE
 - DOUBLE_UNDERSCORE
and bind the f08 symbol to the uniquely defined C symbol.

Use real data structures to make the code simpler.
(perl script written by Jeff)
 2015-07-27 16:28:57 +09:00
Gilles Gouaillardet
318a1a40a4 coll/libnbc: ireduce_scatter_block 
silence malloc(0) warning reported by Lisandro
 2015-07-27 16:23:08 +09:00
Gilles Gouaillardet
7af5238595 f08: misc Makefile fixes 2015-07-27 16:19:44 +09:00
Mike Dubman
551d3428be Merge pull request #748 from yosefe/topic/ikrit-dc-defaults-master 
ikrit: set DC defaults.
 2015-07-26 19:52:41 +03:00
George Bosilca
c03b3b135c Don't allow multiple pvar with the same pvar_index. 
Fix Cisco copyright.
 2015-07-25 15:57:50 -04:00
Guillaume Papauré
98b6d65385 avoid use of non initialized variable 2015-07-25 15:29:32 -04:00
George Bosilca
e239de581b Create a new topology framework using the TreeMatch library developped 
at Inria Bordeaux. This allows us to take advantage of the remap
capability of MPI to rearrange the ranks beased on the weights
povided by the application.

Fix the indentation and protect with __DEBUG__ one fprintf.

Add the Cecill-B license to the imported library.

Fix a compiler warning.

Restrict the TreeMatch dependencies.

The TreeMatch software is released under BSD3 (as indicated by their
copyright information @
https://gforge.inria.fr/scm/viewvc.php/COPYING?view=markup&root=treematch).

Update the README.
 2015-07-25 13:30:42 -04:00
bosilca
5b9f59bb43 Merge pull request #738 from rolfv/pr/fix-msg-and-spaces 
Fix arguments to error message, remove tabs and trailing spaces
 2015-07-25 11:38:54 -04:00
Jeff Squyres
3e6694f7ea sharedfp: whitespace cleanup 
No code changes.

Replace tabs with spaces and do other whitespace cleanup (via emacs).
 2015-07-25 05:46:37 -07:00
Jeff Squyres
868a84d4da sharedfp: have sm_data->mutex always point to the right mutex 
Even if the mutex is actually located in
sm_data->sm_offset_ptr->mutex, have sm_data->mutex point to it.  This
avoids a few #if blocks that are otherwise identical.
 2015-07-25 05:42:57 -07:00
Jeff Squyres
5e159feb5a get_library_version: always use "X.Y.Z" version number format 
Fix one last place where we would write only "X.Y" if Z was 0 (we now
always write all three X, Y, Z values, even if Z is zero).
 2015-07-25 08:01:36 -04:00
Nathaniel Graham
59c43f4669 Additional java bindings for the Comm class 
Added bindings for MPI_COMM_CREATE_GROUP and MPI_COMM_DUP_WITH_INFO.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-24 16:14:35 -06:00
Howard Pritchard
dd231870a2 Merge pull request #746 from nrgraham23/formatting_fixes 
Formatting fixes for Java files.
 2015-07-24 14:25:14 -06:00
yosefe
41f3b77e31 ikrit: set DC defaults. 2015-07-24 21:01:13 +03:00
Nathaniel Graham
f87c41e926 Fix a compile issue in MPI.java 
A conflict was not fully resolved in the previous merge.  This
fixes the issue that was created.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-24 11:54:52 -06:00
Howard Pritchard
13bfb2baab Merge pull request #744 from hppritcha/topic/help_lanl_admins 
lanl: help out lanl admins
 2015-07-24 11:48:17 -06:00
Nathaniel Graham
0d7a38552e Formatting fixes for Java files. 
Fixed tab indenting as well as some of the block comments
at the top of a few of the files.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-24 11:02:13 -06:00
Howard Pritchard
5f14273e32 Merge pull request #743 from nrgraham23/java_win_name_bindings 
Java bindings for window name get and set
 2015-07-24 10:53:14 -06:00
Edgar Gabriel
4f85e0d833 add the configure logic to check for sem_open and sem_init. 
Change the code to rely on HAVE_SEM_OPEN etc. instead of my internal macro.
 2015-07-24 10:23:43 -05:00
Edgar Gabriel
d1d23054c6 rename the sm_offset structure to mca_sharedfp_sm_offset to obey to the Open MPI naming convention 2015-07-24 10:10:41 -05:00
Edgar Gabriel
c91cb67787 fix a bug in the unnamed semaphore section that was introduced when I tried to unify the named and unnamed semaphore logic. 2015-07-24 10:05:07 -05:00
Howard Pritchard
1631ad7d63 Merge pull request #740 from nrgraham23/environment_java_bindings 
Java Environment Variable Bindings
 2015-07-24 09:04:50 -06:00
Howard Pritchard
5eccba17af lanl: help out lanl admins 
LANL admins want platform files and *.conf
files so oblige them.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-07-24 08:03:52 -07:00
Edgar Gabriel
57c301f25a remove an erroneous free statement. 2015-07-24 09:44:27 -05:00
Ralph Castain
93f7a51275 Update the orte/system/opal_hotel test 2015-07-24 07:34:59 -07:00
Howard Pritchard
e92c282f78 Merge pull request #741 from hppritcha/topic/failure_to_launch 
plm/alps: fix orted based launch failures.
 2015-07-23 21:13:23 -06:00
Jeff Squyres
d4e665b89e README: fix typo -- should be "PSM2" 2015-07-23 21:13:45 -04:00
Nathaniel Graham
2a156a1c2e Java bindings for window name get and set 
Includes bindings for MPI_WIN_GET_NAME and MPI_WIN_SET_NAME.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-23 18:01:19 -06:00
Howard Pritchard
70096d3753 plm/alps: fix orted based launch failures. 
Turns out that when one builds Open MPI with --disable-dlopen
for Cray, a whole bunch of cray specific libraries get linked
in to the orted executable.  One of these is Cray PMI.  The
Cray PMI has a ctor which, if run, causes job launches using
mpirun to fail.  This commit suppresses the running of the
ctor and thus prevents failure to launch.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-07-23 15:07:57 -07:00
Nathaniel Graham
a1b47a333a Java Environment Variable Bindings 
Added the bindings for MPI_GET_VERSION and MPI_GET_LIBRARY_VERSION.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-23 14:52:01 -06:00
Rolf vandeVaart
d184f260ad Update extensions section to include cuda 2015-07-23 15:38:44 -04:00
Jeff Squyres
df800286e4 Merge pull request #709 from avilcheslopez/master 
Improving opal_pointer_array bounds checking.
 2015-07-23 14:45:11 -04:00
Alejandro Vilches
994ed60b3d Improving opal_pointer_array bounds checking (using 
OPAL_UNLIKELY).
 2015-07-23 11:53:16 -07:00
Jeff Squyres
3a5537486e NEWS and README: various updates 
- Add the v1.10 NEWS bullets
- Minor updates for PSM/PSM2, MPI extensions
 2015-07-23 14:40:17 -04:00
Rolf vandeVaart
1f32fa21ae Fix arguments to error message, remove tabs and trailing spaces 2015-07-23 10:02:45 -04:00
Jeff Squyres
60609cbb79 orte/test/system: fix compiler warnings 
Note that the opal_hotel test still doesn't compile; it looks like it
needs to be updated to the new requirement to pass an event base.
 2015-07-23 06:19:33 -07:00
Jeff Squyres
ac547126ca openmpi-nightly-tarball.sh: more verbosity, fix coverity 
Add --with-libfabric CLI argument to the coverity build so that usnic
support can be built.
 2015-07-22 21:44:10 -04:00
Jeff Squyres
162da0e98d authors-to-cvsimport.pl: remove stale file 
This script isn't needed any more.
 2015-07-22 21:43:25 -04:00
Rolf vandeVaart
773b509407 Merge pull request #737 from rolfv/pr/add-cuda-war 
Add a workaroud for issue in libcuda.so library
 2015-07-22 16:14:14 -04:00
Howard Pritchard
967907fea4 Merge pull request #731 from nrgraham23/alltoallw_functions 
Alltoallw functions
 2015-07-22 12:21:01 -06:00
Jeff Squyres
f7f1fc9ce2 Merge pull request #736 from nrgraham23/missed_copyrights 
Adding missed copyrights.
 2015-07-22 13:15:27 -04:00
Nathaniel Graham
1197d2a893 Adding missed copyrights. 
I did not add the LANL copyrights to the files I touched
while fixing the javadoc errors.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-22 11:04:41 -06:00
Rolf vandeVaart
7703c96496 Add a workaroud for issue in libcuda.so library 2015-07-22 11:35:27 -04:00
rhc54
d6b7655b91 Merge pull request #730 from rhc54/topic/finalize 
Fix application finalize race condition in RML
 2015-07-22 06:44:14 -07:00
Jeff Squyres
6929aca1b7 topo/basic: also remove .windows from Makefile.am 2015-07-22 09:20:43 -04:00
Jeff Squyres
24ca887bd8 topo/basic: remove stale (empty) .windows file 2015-07-22 09:10:50 -04:00
Jeff Squyres
516b14d623 README: updates for network options 
- Add libfabric options
- Remove sctp options (the SCTP BTL was removed from the tree)
- Put the network options in alphabetical order
 2015-07-22 08:44:12 -04:00
Nathaniel Graham
11e1f09c25 White space fixes 
Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-21 16:39:59 -06:00