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19 Коммитов

Автор SHA1 Сообщение Дата
Edgar Gabriel
bf058ca6b0 common/ompio: check datatypes when setting file view
return MPI_ERR_ARG if the size of the fileview is not a
multiple of the size of the etype provided.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2018-10-11 14:43:32 -05:00
Edgar Gabriel
df4431bd48 io/ompio: add support for some info objects
add support for the info objects cb_buffer_size and collective_buffering.
Also, introduce a new mca parameter that allows to give feedback
on whether an info object is recognized (and honored).

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2018-06-19 19:34:36 -05:00
Edgar Gabriel
bc0f60dfd9 sharedfp/all components: revamp internal operations
this commit revamps the internal operations of the sharedfp components.
Specifically, it is focused around removing the second file_open
operation for shared file pointers. This makes the code more efficient.
Because of that, there is no necessity anymore for the sharedfp_lazy_open
mca parameter.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2018-06-18 14:34:05 -05:00
Gilles Gouaillardet
cd45c7abb6 ompio: misc renames
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-06-14 09:41:10 +09:00
Gilles Gouaillardet
36b35ae0db ompio: fix abstraction
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-06-14 09:41:10 +09:00
Edgar Gabriel
8feb497dbe io/ompio: cleanup the aggregator selection logic
and some internal structure elements/components. Along the way,
add support for the cb_nodes Info object.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2018-06-07 16:47:10 -05:00
Edgar Gabriel
6b03cee7f1 io/ompio: erroneous condition in selecting aggregator selection logic
fix the logic in the decision which aggregator selection algorithm
to use.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2018-05-24 15:52:19 -05:00
Edgar Gabriel
76a8c67575 io/ompio: add a new grouping option avoiding communication
the new grouping option simple+ performs all calculations used
for the aggregator selection as if the default file view would be used,
thus avoiding communication in file_set_view all together. This mode
is useful for applications that do not set a file view, but use
explicit offset operations on the default file view.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2017-09-18 12:30:34 -05:00
Edgar Gabriel
8fe1c63e25 io/ompio: change the increment for cost based aggr. selection
- change the increment used to test various no. of aggregators
  to avoid using only power of two numbers
- convert some paratemers in the cost function from integers to
  to floats for providing smoother and more consistent results
- set the FVIEW_IS_SET flag on the file *only* if the user
  has set anything else than the default file view.

Signed-off-by: Edgar Gabriel <gabriel@cs.uh.edu>
2017-08-15 09:50:41 -05:00
Edgar Gabriel
3b0b8fa12c io/ompio: update cartesian based grouping strategy
update the cartesian communicator based grouping strategy to match the other
algorithms used in the aggregator selection process.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2017-06-15 14:05:54 -05:00
Mark Allen
482d84b6e5 fixes for Dave's get/set info code
The expected sequence of events for processing info during object creation
is that if there's an incoming info arg, it is opal_info_dup()ed into the obj
at obj->s_info first. Then interested components register callbacks for
keys they want to know about using opal_infosubscribe_infosubscribe().

Inside info_subscribe_subscribe() the specified callback() is called with
whatever matching k/v is in the object's info, or with the default. The
return string from the callback goes into the new k/v stored in info, and
the input k/v is saved as __IN_<key>/<val>. It's saved the same way
whether the input came from info or whether it was a default. A null return
from the callback indicates an ignored key/val, and no k/v is stored for
it, but an __IN_<key>/<val> is still kept so we still have access to the
original.

At MPI_*_set_info() time, opal_infosubscribe_change_info() is used. That
function calls the registered callbacks for each item in the provided info.
If the callback returns non-null, the info is updated with that k/v, or if
the callback returns null, that key is deleted from info. An __IN_<key>/<val>
is saved either way, and overwrites any previously saved value.

When MPI_*_get_info() is called, opal_info_dup_mpistandard() is used, which
allows relatively easy changes in interpretation of the standard, by looking
at both the <key>/<val> and __IN_<key>/<val> in info. Right now it does
  1. includes system extras, eg k/v defaults not expliclty set by the user
  2. omits ignored keys
  3. shows input values, not callback modifications, eg not the internal values

Currently the callbacks are doing things like
    return some_condition ? "true" : "false"
that is, returning static strings that are not to be freed. If the return
strings start becoming more dynamic in the future I don't see how unallocated
strings could support that, so I'd propose a change for the future that
the callback()s registered with info_subscribe_subscribe() do a strdup on
their return, and we change the callers of callback() to free the strings
it returns (there are only two callers).

Rough outline of the smaller changes spread over the less central files:
  comm.c
    initialize comm->super.s_info to NULL
    copy into comm->super.s_info in comm creation calls that provide info
    OBJ_RELEASE comm->super.s_info at free time
  comm_init.c
    initialize comm->super.s_info to NULL
  file.c
    copy into file->super.s_info if file creation provides info
    OBJ_RELEASE file->super.s_info at free time
  win.c
    copy into win->super.s_info if win creation provides info
    OBJ_RELEASE win->super.s_info at free time

  comm_get_info.c
  file_get_info.c
  win_get_info.c
    change_info() if there's no info attached (shouldn't happen if callbacks
      are registered)
    copy the info for the user

The other category of change is generally addressing compiler warnings where
ompi_info_t and opal_info_t were being used a little too interchangably. An
ompi_info_t* contains an opal_info_t*, at &(ompi_info->super)

Also this commit updates the copyrights.

Signed-off-by: Mark Allen <markalle@us.ibm.com>
2017-05-17 01:12:49 -04:00
David Solt
50aa143ab6 Major structural changes to data types: .super infosubscriber
ompi_communicator_t, ompi_win_t, ompi_file_t all have a super class of type opal_infosubscriber_t instead of a base/super type of opal_object_t (in previous code comm used c_base, but file used super).  It may be a bit bold to say that being a subscriber of MPI_Info is the foundational piece that ties these three things together, but if you object, then I would prefer to turn infosubscriber into a more general name that encompasses other common features rather than create a different super class.  The key here is that we want to be able to pass comm, win and file objects as if they were opal_infosubscriber_t, so that one routine can heandle all 3 types of objects being passed to it.

MPI_INFO_NULL is still an ompi_predefined_info_t type since an MPI_Info is part of ompi but the internal details of the underlying information concept is part of opal.

An ompi_info_t type still exists for exposure to the user, but it is simply a wrapper for the opal object.

Routines such as ompi_info_dup, etc have all been moved to opal_info_dup and related to the opal directory.

Fortran to C translation tables are only used for MPI_Info that is exposed to the application and are therefore part of the ompi_info_t and not the opal_info_t

The data structure changes are primarily in the following files:

    communicator/communicator.h
    ompi/info/info.h
    ompi/win/win.h
    ompi/file/file.h

The following new files were created:

    opal/util/info.h
    opal/util/info.c
    opal/util/info_subscriber.h
    opal/util/info_subscriber.c

This infosubscriber concept is that communicators, files and windows can have subscribers that subscribe to any changes in the info associated with the comm/file/window.  When xxx_set_info is called, the new info is presented to each subscriber who can modify the info in any way they want.  The new value is presented to the next subscriber and so on until all subscribers have had a chance to modify the value.  Therefore, the order of subscribers can make a difference but we hope that there is generally only one subscriber that cares or modifies any given key/value pair.  The final info is then stored and returned by a call to xxx_get_info.

The new model can be seen in the following files:

    ompi/mpi/c/comm_get_info.c
    ompi/mpi/c/comm_set_info.c
    ompi/mpi/c/file_get_info.c
    ompi/mpi/c/file_set_info.c
    ompi/mpi/c/win_get_info.c
    ompi/mpi/c/win_set_info.c

The current subscribers where changed as follows:

    mca/io/ompio/io_ompio_file_open.c
    mca/io/ompio/io_ompio_module.c
    mca/osc/rmda/osc_rdma_component.c (This one actually subscribes to "no_locks")
    mca/osc/sm/osc_sm_component.c (This one actually subscribes to "blocking_fence" and "alloc_shared_contig")

Signed-off-by: Mark Allen <markalle@us.ibm.com>

Conflicts:
	AUTHORS
	ompi/communicator/comm.c
	ompi/debuggers/ompi_mpihandles_dll.c
	ompi/file/file.c
	ompi/file/file.h
	ompi/info/info.c
	ompi/mca/io/ompio/io_ompio.h
	ompi/mca/io/ompio/io_ompio_file_open.c
	ompi/mca/io/ompio/io_ompio_file_set_view.c
	ompi/mca/osc/pt2pt/osc_pt2pt.h
	ompi/mca/sharedfp/addproc/sharedfp_addproc.h
	ompi/mca/sharedfp/addproc/sharedfp_addproc_file_open.c
	ompi/mca/topo/treematch/topo_treematch_dist_graph_create.c
	ompi/mpi/c/lookup_name.c
	ompi/mpi/c/publish_name.c
	ompi/mpi/c/unpublish_name.c
	opal/mca/mpool/base/mpool_base_alloc.c
	opal/util/Makefile.am
2017-05-12 14:41:05 -04:00
Gilles Gouaillardet
fa5cd0dbe5 use ptrdiff_t instead of OPAL_PTRDIFF_TYPE
since Open MPI now requires a C99, and ptrdiff_t type is part of C99,
there is no more need for the abstract OPAL_PTRDIFF_TYPE type.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-04-19 13:41:56 +09:00
George Bosilca
366d64b7e5 Move the collective structure outside the communicator.
As we changed the ABI (forcing a major release), we can limit
the size of the predefined communicators by moving the collective
structure outside the communicator. This might have a minimal,
but unnoticeable, impact on performance. This approach has been
discussed during the January 2017 devel meeting.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-02-27 11:54:17 -06:00
Edgar Gabriel
f5289a1803 common/ompio: store correctly the SHAREDFP_IS_SET flag
it looks like disabling the lazy_open flag for sharedfp components
revealead a bug that lead to a crash in file_close in some tests. Make
sure the SHAREDFP_IS_SET flag is correctly set (and not overwritten again),
and we use that to avoid a double-free of the communicator.

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
2017-01-24 12:09:56 -06:00
Ralph Castain
1e2019ce2a Revert "Update to sync with OMPI master and cleanup to build"
This reverts commit cb55c88a8b7817d5891ff06a447ea190b0e77479.
2016-11-22 15:03:20 -08:00
Ralph Castain
cb55c88a8b Update to sync with OMPI master and cleanup to build
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2016-11-22 14:24:54 -08:00
Edgar Gabriel
be183cb3dd io/ompio: fix the reference count of basic datatypes used as etypes or ftypes. 2016-08-31 14:08:26 -05:00
Edgar Gabriel
19fe5cac50 io/ompio: next step in code-reorganization
- move the sort_iovec operations to fcoll/base
 - move set_view_internal to common/ompio
 - move set_file_default to common/ompio
 - remove io_ompio_sort, not used anymore.
2016-08-02 09:18:29 -05:00