ports/openmpi
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Jeff Squyres
6bb356ab87 Squash a bunch of harmless compiler warnings. 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2018-09-26 12:15:21 -07:00
Ralph Castain
a32c589920
Merge pull request #5778 from rhc54/topic/maps 
Update mapping system
 2018-09-26 10:55:14 -07:00
Ralph Castain
45f23ca5c9 Update mapping system 
Correctly transfer job-level mapping directives for dynamically spawned
jobs to the mapping system.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2018-09-26 10:00:09 -07:00
Gilles Gouaillardet
23271c97ee
Merge pull request #5768 from ggouaillardet/topic/ucx__FUNCTION__ 
ucx: use the c99 __func__ macro instead
 2018-09-26 12:27:59 +09:00
Jeff Squyres
16e0ced0a4
Merge pull request #5453 from PhilippOtte/corrections_F08_signatures_collectives 
Corrections to Fortran 2008 interfaces
 2018-09-25 13:51:21 -04:00
Jeff Squyres
b14b3bc27d
Merge pull request #5773 from jsquyres/pr/moar-readme-libdir-updates 
README: additional clarification about --with-<foo>-libdir.
 2018-09-25 11:55:31 -04:00
Jeff Squyres
36c9f92117 README: additional clarification about --with-<foo>-libdir. 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2018-09-25 11:02:11 -04:00
Jeff Squyres
76e4983aa0
Merge pull request #5767 from jsquyres/pr/readme-rpath-update 
README: Add note about --with-foo and RPATH
 2018-09-25 09:33:56 -04:00
Gilles Gouaillardet
db65dbd9a8 ucx: use the c99 __func__ macro instead 
__FUNCTION__ macro was never standardized and should not be used.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-09-25 11:19:18 +09:00
Gilles Gouaillardet
f750c6932c fortran/use-mpi-f08: Corrections to PMPI signatures of collectives 
Corrected the signatures of the collectives used by the Fortran 2008
interface to state correct intent for inout arguments and use the
ASYNCHRONOUS attribute in non-blocking collective calls.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-09-25 11:17:01 +09:00
Philipp Otte
e98d794e8b fortran/use-mpi-f08: Corrections to Fortran08 signatures of collectives 
Corrected the signatures of the collectives used by the Fortran 2008
interface to state correct intent for inout arguments and use the
ASYNCHRONOUS attribute in non-blocking collective calls. Also corrected
the C-bindings in Fortran accordingly

Signed-off-by: Philipp Otte <philipp.j.otte@googlemail.com>
 2018-09-25 11:16:52 +09:00
Jeff Squyres
9367440e32 README: Add note about --with-foo and RPATH 
Specifically mention our intended behavior about /usr and /usr/lib
(and why we don't add /usr/lib[64] and /usr/local/lib[64] to RPATH).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2018-09-24 17:37:28 -04:00
Jeff Squyres
9047198320
Merge pull request #5758 from jsquyres/pr/fix-ompi-info-output-settable 
mca_base_var: fix output bug about settable vars
 2018-09-24 17:08:24 -04:00
Jeff Squyres
176da51aec mca_base_var: fix output bug about settable vars 
Fix the test that determined whether we output "writeable" or
"read-only" for MCA vars (it was checking the wrong flag).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2018-09-22 07:18:45 -07:00
bosilca
3f598e9e83
Merge pull request #5450 from mkurnosov/coll-base-allgather-fix-in-place 
coll-base-allgather: fix MPI_IN_PLACE processing
 2018-09-21 14:51:45 -04:00
bosilca
17f1684438
Merge pull request #5491 from mkurnosov/coll-base-allgatherv-fix-mpi-in-place 
coll/base/allgatherv: fix MPI_IN_PLACE processing
 2018-09-21 14:48:16 -04:00
Nathan Hjelm
c6230657a2 opal: fix warning 
Fixes #5713

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2018-09-21 00:51:40 -06:00
Yossi Itigin
8bd89b8d43
Merge pull request #5717 from yosefe/topic/shmem-lock-progress 
shmem/lock: progress communications while waiting for shmem_lock
 2018-09-20 18:49:08 +03:00
Yossi Itigin
a31dc5ddcb
Merge pull request #5725 from amaslenn/platform-mellanox 
platform/mellanox: cleanup autodetect config
 2018-09-20 18:48:43 +03:00
Yossi Itigin
b18af26f4b
Merge pull request #5726 from amaslenn/platform-mellanox-conf 
platform/mellanox: update default configuration
 2018-09-20 18:48:18 +03:00
Brian Barrett
9344afd485 openib: Disable CUDA async by default 
Disable async receive for CUDA under OpenIB.  While a performance
optimization, it also causes incorrect results for transfers
larger than the GPUDirect RDMA limit.  This change has been validated
and approved by Akshay.

References #3972

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
 2018-09-20 07:58:10 -07:00
Howard Pritchard
dccf780546
Merge pull request #5737 from hppritcha/topic/remove_scif_support 
SCIF: remove it
 2018-09-19 11:38:27 -06:00
Howard Pritchard
b9ac3d8931 SCIF: remove it 
KNC is effectively dead.  Remove corresponding SCIF
support in Open MPI.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2018-09-19 10:39:52 -06:00
bosilca
441727fcb0
Merge pull request #5680 from ggouaillardet/topic/nbc_unpack 
coll/libnbc: fix NBC_Unpack()
 2018-09-19 10:17:21 -04:00
bosilca
2ae3cfd9bc
Merge pull request #5699 from ICLDisco/export/coll_errors 
Error cases in base collectives
 2018-09-19 09:47:24 -04:00
bosilca
b0e2975f86
Merge pull request #5701 from ICLDisco/export/errors_ib 
Adding error handling in OpenIB BTL
 2018-09-19 09:45:58 -04:00
bosilca
464e1abbab
Merge pull request #5700 from ICLDisco/export/tcp_errors 
Handle error cases in TCP BTL
 2018-09-19 09:44:38 -04:00
Jeff Squyres
3dae8703a5
Merge pull request #5451 from ggouaillardet/topic/use_mpi_f08_bindings 
fortran/use-mpi-f08: clean [p]ompi_FOO_f bindings
 2018-09-19 07:53:04 -04:00
KAWASHIMA Takahiro
6e4ac8b932
Merge pull request #5734 from t-kurita/pr/java-doc-descriptions 
java: Fix typos of `javadoc`
 2018-09-19 16:39:58 +09:00
Kurita, Takehiro
fb8311d331 java: Fix typos of javadoc 
Signed-off-by: Kurita, Takehiro <fj6370fp@aa.jp.fujitsu.com>
 2018-09-19 14:45:17 +09:00
Gilles Gouaillardet
c4ce01d104 fortran/use-mpi-f08: use bindings from ompi_mpifh_bindings 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-09-19 14:13:00 +09:00
Gilles Gouaillardet
c6070fd2e0 fortran/use-mpi-f08: fix [p]ompi_FOO_f symbols handling 
- do not generate bindings for pompi_FOO_f symbols
   (they are simply not used anywhere)

 - move ompi_FOO_f bindings out of mpi_f08.mod into
   ompi_mpifh_bindings.mod that is only used at build time

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-09-19 14:12:55 +09:00
Gilles Gouaillardet
6e04b2a66a configury: do not define "dummy" empty targets any more. 
We previously needed to have empty targets because AM couldn't handle
having an AM_CONDITIONAL was targets in the "if" statement but not in the
"else".  :-(

That now appears as an old automake bug that has been fixed,
so cleanup some Makefile.am

Thanks Jeff for the pointer.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-09-19 14:12:50 +09:00
Gilles Gouaillardet
d2393251f7 use-mpi-f08: fix a typo in [P]MPI_Dist_graph_create_adjacent bindings 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-09-19 14:12:46 +09:00
Jeff Squyres
cf2880cae6
Merge pull request #5731 from jsquyres/pr/fix-c11-atomic-configury 
opal_config_asm.m4: fix typo in new C11 atomic code
 2018-09-18 18:07:53 -04:00
Jeff Squyres
c0fff499cf opal_config_asm.m4: fix typo in new C11 atomic code 
Delete an obvious typo.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2018-09-18 14:18:51 -07:00
Jeff Squyres
09d6740a72
Merge pull request #4897 from bosilca/topic/waitsome 
Be conservative with the array_of_indices
 2018-09-18 12:34:22 -04:00
Jeff Squyres
cfc03d4d63
Merge pull request #5724 from amaslenn/rpmbuild-topdir 
rpmbuild: fix rpmtopdir redefinition
 2018-09-18 12:25:02 -04:00
Ralph Castain
8a200ba2ee
Merge pull request #5716 from mkuron/eopnotsupp 
Deal with EOPNOTSUPP returned from getsockopt()
 2018-09-18 08:56:40 -07:00
Andrey Maslennikov
da18a2d24c platform/mellanox: update default configuration 
Signed-off-by: Andrey Maslennikov <andreyma@mellanox.com>
 2018-09-18 09:51:47 +03:00
Andrey Maslennikov
ced50a98ff platform/mellanox: cleanup autodetect config 
Signed-off-by: Andrey Maslennikov <andreyma@mellanox.com>
 2018-09-18 09:47:51 +03:00
KAWASHIMA Takahiro
e27f519a5e
Merge pull request #5722 from kawashima-fj/pr/pcoll-typo 
mpiext/pcollreq: fix more typos
 2018-09-18 15:41:20 +09:00
Andrey Maslennikov
c7d51a3a83 rpmbuild: fix rpmtopdir redefinition 
Erasing this variable by default makes outside definition useless.

Signed-off-by: Andrey Maslennikov <andreyma@mellanox.com>
 2018-09-18 09:38:01 +03:00
Gilles Gouaillardet
a997ec8a10
Merge pull request #5721 from ggouaillardet/topic/libnbc_error_path 
coll/libnbc: fix various error paths
 2018-09-18 15:28:03 +09:00
KAWASHIMA Takahiro
4a0a2598f6 mpiext/pcollreq: fix more typos 
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
 2018-09-18 14:45:33 +09:00
Gilles Gouaillardet
8b51862fb2 coll/libnbc: fix various error paths 
The parameter passed to NBC_Return_handle() was incorrectly casted
and not dereferenced.

Thanks Yossi for the bug report.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-09-18 13:17:43 +09:00
Gilles Gouaillardet
821cccc1f0
Merge pull request #5719 from ggouaillardet/topic/pcollreq_typos 
mpiext/pcollreq: fix misc typos
 2018-09-18 12:42:15 +09:00
Gilles Gouaillardet
8dc6985a5a mpiext/pcollreq: fix misc typos 
Thanks Jeff for the report

Fixes open-mpi/ompi#5712

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2018-09-18 10:02:04 +09:00
Yossi Itigin
41011502c8 shmem/lock: progress communications while waiting for shmem_lock 
Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
 2018-09-16 18:46:36 +03:00
Michael Kuron
17b0f1fcc3 Deal with EOPNOTSUPP returned from getsockopt() 
This can be returned when running on QEMU user-mode emulation,
which does not support getsockopt with SO_RCVTIMEO.

Signed-off-by: Michael Kuron <mkuron@icp.uni-stuttgart.de>
 2018-09-16 14:55:28 +02:00