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Mike Dubman
6b8f9d68e8 Merge pull request #413 from miked-mellanox/topic/revert_mxm_cov_fixes 
revert mxm cov fixes
 2015-02-23 08:56:23 +02:00
Mike Dubman
5b3b04b26e mxm: revert coverity fixes 
mxm fails on this commit: 780c93ee57
 2015-02-23 07:52:28 +02:00
Gilles Gouaillardet
8d44d7086a hwloc/base: fix misc memory leaks 
as reported by Coverity with CIDs 710636 and 1270441
 2015-02-23 13:55:04 +09:00
Gilles Gouaillardet
004160f8da coll/tuned: silence CID 1269934 2015-02-23 13:45:23 +09:00
Jeff Squyres
4c91bdfb0c MPI_Barrier.3in: fix prototypes 
Also fix MPI_Ibarrier.3in to .so to the right MPI_Barrier.3 page.

Thanks to Maximilian for bringing the issue to our attention.
 2015-02-21 06:47:12 -08:00
Jeff Squyres
134070d33d HACKING: minor updates 2015-02-21 03:25:06 -08:00
Jeff Squyres
937bbbac34 libfabric: update to 8528d35551a78b5241e615c0e6ac5a711f96a03c 
Update to latest from libfabric Github master
ofiwg/libfabric@8528d35551
 2015-02-20 12:37:27 -08:00
Jeff Squyres
15be948d79 wrappers: *_EXTRA_INCLUDES does not exist any more 
There were a few places where *_EXTRA_INCLUDES (and derivates) were
still being used.  This commit removes all of them.
 2015-02-20 08:43:25 -08:00
Jeff Squyres
9b716d946e wrappers: fix errant @{libdir} reference in pkg-config files 
The RPATH support added a @{libdir} token into
<package>_WRAPPER_EXTRA_LDFLAGS.  However, these flags are also
substituted into the pkg-config data files, and they don't understand
the @{foo} notation.  So convert @{libdir} into ${libdir}, which
pkg-config *does* understand.

Thanks to Christoph Junghans (@junghans) for notifying us of the issue.

Fixes #406.
 2015-02-20 08:43:19 -08:00
Jeff Squyres
ae5424c18b MPI_Intercomm_merge: fix typo in man page 
Thanks to Harald Servat for noticing and sending a patch.
 2015-02-20 07:13:55 -08:00
Jeff Squyres
ec62766a71 notifier base: remove unused variables 2015-02-20 07:06:13 -08:00
Elena
48eae25b8f fixed issue with grpcomm rcd and brks algorithms which led to performance issues: data just for part of processes was unpacked and stored locally during fence, therefore clients were forced to ask daemons for data directly during get request 2015-02-20 16:41:25 +02:00
Igor Ivanov
010dce307a Fix set of coverity issues 
List of CIDs (scan.coverity.com):
oshmem:
1269787, 1269907, 1270161, 1270162, 1270977, 1270978
ompi:
1270170, 1270172, 1270173

Signed-off-by: Igor Ivanov <Igor.Ivanov@itseez.com>
 2015-02-20 17:45:46 +04:00
Igor Ivanov
426d1ce146 oshmem: Fix set of coverity issues 
List of CIDs (scan.coverity.com):
1269721, 1269725, 1269787, 1269907, 1269909, 1269910, 1269911, 1269912,
1269959, 1269960, 1269984, 1269985, 1270136, 1270157, 1269845, 1269875,
1269876, 1269877, 1269878, 1269884, 1269885, 1270161, 1270162, 1270175,
1269734, 1269739, 1269742, 1269743

Signed-off-by: Igor Ivanov <Igor.Ivanov@itseez.com>
 2015-02-19 23:00:17 +04:00
Ralph Castain
8b625c2756 Ensure the provider name isn't NULL before trying to strdup it 2015-02-19 08:38:23 -08:00
Jeff Squyres
4872b0fc28 openmpi-nightly-tarball: move the OMPI token file 
Also put the coverity params up top, with all other params.
 2015-02-19 09:24:36 -05:00
Jeff Squyres
6098b84294 libfabric: pass the appropriate LDFLAGS to libfabric components 
When compiling against an external libfabric, ensure to also pass the
appropriate -L flags so that the compiler/linker can find it.
 2015-02-19 05:35:38 -08:00
Jeff Squyres
2d636147e3 reachable netlink: fix the component symbol name 2015-02-19 04:25:15 -08:00
Ralph Castain
008755ab17 Remove stale file reference 2015-02-18 18:36:08 -08:00
Rolf vandeVaart
dbd0064713 Fix bug in CUDA-aware and GDR introduced by refactoring 2015-02-18 17:44:28 -05:00
Nathan Hjelm
0e09b9298a mca/base: add framework flag indicating a framework does not have 
dso components

This flag is needed for a special case framework: dl. The framework is
needed before any dl components can be used.
 2015-02-18 14:03:51 -07:00
rhc54
ae16a168ec Merge pull request #401 from rhc54/reachable 
Add reachable framework for determining TCP connections
 2015-02-18 08:22:48 -08:00
Jeff Squyres
b66fc3aed9 opal_check_visibility.m4: remove extraneous sym link 
The sym link to this m4 is not necessary down in the component.
 2015-02-18 03:40:25 -08:00
Jeff Squyres
f040ef09ff libfabric: properly define HAVE_ALIAS_ATTRIBUTE 
@ggouaillardet identified that HAVE_ALIAS_ATTRIBUTE was not properly
being defined in the embedded libfabric.  This is because the
embedded configury missed the test for it (i.e., the real configure.ac
for libfabric always defines HAVE_ALIAS_ATTRIBUTE to 0 or 1 -- we
didn't emulate that properly here in libfabric's configure.m4).

Also, fix some grammar and properly escape another AC_MSG_CHECKING
message in libfabric's configure.m4.
 2015-02-18 03:26:34 -08:00
Gilles Gouaillardet
28714b60cb btl/sm: fix misc errors 
as reported by Coverity as CIDs 711636 and 1269847
 2015-02-18 17:05:19 +09:00
Gilles Gouaillardet
5db3065d63 fortran: fix misc memory leak in lookup_name 
as reported by Coverity with CID 1269897
 2015-02-18 16:41:56 +09:00
Gilles Gouaillardet
bda8058f39 coll/tuned: fix memory leaks and misc issues 
as reported by Coverity with CIDs
70132, 70265, 70267, 70268, 70322, 70400, 70580, 70615,
1269934, 1269944, 1269968, 1269982, 1269983
 2015-02-18 16:29:42 +09:00
Ralph Castain
9ef523c152 Add reachable framework for determining TCP connections 2015-02-17 21:47:09 -08:00
Ralph Castain
f7c28ea706 Fix bad test - opal_buffer and opal_ptr can support NULL locations 2015-02-17 21:46:23 -08:00
Ralph Castain
852fbca020 Shut coverity up 2015-02-17 21:17:23 -08:00
Ralph Castain
c1282d5b99 The opal_buffer type also generates its own alloc, so need to let it pass thru the check 2015-02-17 21:06:19 -08:00
Ralph Castain
207cc74f87 Correct name of help file 2015-02-17 16:03:20 -08:00
Ralph Castain
624b16e070 Protect the unload attribute function 2015-02-17 14:21:23 -08:00
Ralph Castain
78245e8a33 Continue massaging of the notifier framework. Convert it to an event-driven interface. Add the ability to report job state if requested. Cleanup object declarations. 2015-02-17 12:51:11 -08:00
Nathan Hjelm
298f238096 opal_lifo: add missing memory barrier to 64/32-bit atomic lifo 
implementation

Need to ensure the head write is complete before updating the item's
next pointer.

References #371
 2015-02-17 12:23:13 -07:00
Nathan Hjelm
030e9bc714 mtl/ofi: fix mca variable usage error 
The fi_fabric function appears to free the provider string passed in
in the fabric_attr. This causes MCA to free an invalid pointer when
the parameter is freed.

References #374
 2015-02-17 12:15:31 -07:00
Jeff Squyres
9cb047c1ee libfabric: don't install the osd.h headers 
When configured --with-devel-headers, there's now 2 "osd.h" header
files in libfabric (in different dirs).  Automake's "install" target
didn't like this, and errored out.

Since embedding libfabric is a temporary measure, just avoid the
problem by not installing any libfabric headers.
 2015-02-17 07:10:12 -08:00
Gilles Gouaillardet
8dc4f30fae orte/tools: fix NULL pointer dereference 
as reported by Coverity with CIDs 1196671 and 1196824
 2015-02-17 15:45:06 +09:00
Gilles Gouaillardet
7dabc7b3ab bml/r2: fix a typo 
reported by Coverity as CID 1270228
 2015-02-17 14:28:17 +09:00
Gilles Gouaillardet
55948f2a6d hwloc: fix misc memory leak 
as reported by Coverity with CID 1270441
(previous commit open-mpi/ompi@c25185f3a9 did not fully fix that one)
 2015-02-17 14:06:15 +09:00
Gilles Gouaillardet
b762766969 orte/util: fix misc memory leaks 
as reported by Coverity with CIDS 70314, 710653-710657 and 1196741-1196744
 2015-02-17 12:27:23 +09:00
Ralph Castain
22f1d29b82 Re-introduce the ORTE notifier framework for logging errors that would otherwise result in abort for persistent systems. Thanks to L. Rajeshnarayanan of Intel for the contribution 
Subsequent commits will integrate this capability with the state and errmgr frameworks.
 2015-02-16 12:46:58 -08:00
Jeff Squyres
0bb1dfeca9 osc_base_obj_convert: remove unnecessary MEMCHECKER line 
Commit open-mpi/ompi@1a3597aam changed the type of the `convertor`
variable from `ompi_osc_base_convertor_t` (which contained an
`opal_convertor_t`) to an `opal_convertor_t`.  Hence, using memchecker
to ensure that the inner convertor of the `ompi_osc_base_convertor_t`
is considered initialized is now unnecessary.
 2015-02-16 07:27:44 -08:00
Jeff Squyres
9d7171e8f1 convert: remove unnecessary/unused opal_size2int() function 
The comments in the file even said "This file will hopefully not last
long in the tree...".
 2015-02-16 07:17:33 -08:00
Jeff Squyres
4e318c9df1 coverity: Coverity updated the project name OpenMPI -> Open MPI 
Therefore, we must update the URLs the match the "new" project name. :-)
 2015-02-16 10:12:54 -05:00
Gilles Gouaillardet
02da8bfa93 ompi/java: fix misc bugs 
as reported by Coverity with CIDs 1270187, 1270189 and 1270190
 2015-02-16 15:19:53 +09:00
Gilles Gouaillardet
16c8af6725 opal/dss: correctly handle incorrect parameter in opal_value_unload 
this fixes previous commit open-mpi/ompi@f9b3fb442e
Thanks Ralph for the review !
 2015-02-16 14:53:35 +09:00
Gilles Gouaillardet
f9b3fb442e opal/dss: correctly handle data==NULL in opal_value_unload 2015-02-16 14:40:42 +09:00
Gilles Gouaillardet
da7ffb6448 btl/vader: fix memory leak 
as reported by Coverity with CID 1269904
 2015-02-16 13:51:05 +09:00
Gilles Gouaillardet
c25185f3a9 opal/hwloc: fix misc memory leaks 
as reported by Coverity with CIDS 710631-710638, 1196705,
1196716, 1196717, 1196752, 1196753
 2015-02-16 12:23:37 +09:00