ports/openmpi
ports/openmpi
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Автор SHA1 Сообщение Дата
Nysal Jan K.A
5a7bd898f9 Fix an invalid memory access in mrecv & imrecv 
After the call to PML mrecv/imrecv, the message handle
is set to MPI_MESSAGE_NULL. Use the cached communicator
while invoking the error handler.
 2015-07-30 19:52:40 +05:30
Jithin Jose
bc4e8b7e73 Fix warnings in direct (pml-cm,mtl-ofi) build 
Signed-off-by: Jithin Jose <jithin.jose@intel.com>
 2015-07-29 15:49:37 -07:00
Howard Pritchard
ea6f5b31fd Merge pull request #749 from nrgraham23/additional_comm_java_bindings 
Additional java bindings for the Comm class
 2015-07-29 16:17:54 -06:00
Edgar Gabriel
477083bca3 the memory chunk that has to be allocated for the llapi_get_stripe function seems to have changed compared to earlier version. This implementation now follows the code snipplet from the man pages. 2015-07-29 17:13:55 -05:00
Edgar Gabriel
217dcca853 - the memory chunk that has to be allocated for the llapi_get_stripe function seems to have changed compared to earlier version. This implementation now follows the code snipplet from the man pages. 
- implementation of file_get_size and set_size
 2015-07-29 17:10:39 -05:00
yohann
6eba52a121 mtl/ofi: add missing return. 2015-07-29 14:14:34 -07:00
Nathaniel Graham
9b5786d954 Java binding for MPI_REQUEST_GET_STATUS 
This adds the java binding for MPI_REQUEST_GET_STATUS.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-29 12:04:46 -06:00
Howard Pritchard
569764cd98 Merge pull request #759 from nrgraham23/status_java_bindings 
Java bindings for Status methods
 2015-07-29 10:36:56 -06:00
rhc54
6c7875f701 Merge pull request #758 from rhc54/topic/coverity 
Silence coverity warnings
 2015-07-29 09:30:35 -07:00
Nathaniel Graham
efe69c89a7 Java bindings for Status methods 
Includes java bindings for the MPI_STATUS_SET_ELEMENTS and
MPI_STATUS_SET_CANCELLED.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-29 09:47:03 -06:00
Ralph Castain
023936e84b Silence coverity warnings 2015-07-29 07:28:08 -07:00
Gilles Gouaillardet
83375bcc5c fortran: optimize testall and waitall when MPI_STATUSES_IGNORE is used 2015-07-29 10:00:27 +09:00
Edgar Gabriel
a3327fe299 Merge pull request #756 from edgargabriel/pr/nb-sharedfp-splitcoll2 
- make the split collective shared file pointer operations work
 2015-07-28 19:53:27 -05:00
Edgar Gabriel
3780089ce0 clean up the usage of opal_output vs. printf 2015-07-28 18:27:31 -05:00
Howard Pritchard
377bad18bd Merge pull request #747 from hppritcha/topic/ofi_progress_fix 
mtl/ofi: don't inline ofi progress method
 2015-07-28 09:42:01 -06:00
Edgar Gabriel
f09b834cab remove the C++ interfaces for the new non-blocking collective I/O functions. They are not defined in MPI 3.1 2015-07-28 09:28:37 -05:00
Edgar Gabriel
824d488709 - make the split collective shared file pointer operations work 
- minor code restructering in io/ompio required for that.
 2015-07-28 09:05:05 -05:00
Gilles Gouaillardet
429bdf1af7 oob/tcp: fix a race condition when finalizing the oob/tcp component 2015-07-28 09:16:13 +09:00
Edgar Gabriel
e380f8c235 - fix the delete priority of the ompio component 
- some application use MPI_File_delete as a collective function (e.g. IOR), which I think is not really covered by the standard. Right now, one process succeeds and theother ones return an error code. Fix that by not returning no error if the file that we try to delete does not exist anymore, to make these applications work.
 2015-07-27 15:53:40 -05:00
Edgar Gabriel
3fb0614566 mark the request as ACTIVE 2015-07-27 12:43:45 -05:00
Edgar Gabriel
5e166c81a1 Merge pull request #745 from edgargabriel/pr/sharedfp-sm-logic3 
Pr/sharedfp sm logic3
 2015-07-27 12:04:53 -05:00
Edgar Gabriel
8932387cf2 Merge pull request #4 from jsquyres/edgargabriel-pr/sharedfp-sm-logic3 
Commits on top of open-mpi/ompi#745
 2015-07-27 10:45:07 -05:00
Howard Pritchard
f5c43c1185 mtl/ofi: retain inline progress function 
Retain inline progress function for ofi
mtl, but have a non-inlined progress function
which is registered with the opal progress
mechanism.

 @jithinjosepkl

I've bad news about the psm provider.  I still notice
segfaults - not always - but frequently at finalize
when using the psm provider.  I don't notice this
when using the sockets provider.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-07-27 09:16:52 -06:00
Nathan Hjelm
579e43ffed Merge pull request #750 from bosilca/topic/pvar_update 
Topic/pvar update
 2015-07-27 08:55:09 -06:00
Gilles Gouaillardet
9c77c6b66d fortran: fix f08 bindings 
only define the unique fortran symbol depending on
 - CAPS
 - PLAIN
 - SINGLE_UNDERSCORE
 - DOUBLE_UNDERSCORE
and bind the f08 symbol to the uniquely defined C symbol.

Use real data structures to make the code simpler.
(perl script written by Jeff)
 2015-07-27 16:28:57 +09:00
Gilles Gouaillardet
318a1a40a4 coll/libnbc: ireduce_scatter_block 
silence malloc(0) warning reported by Lisandro
 2015-07-27 16:23:08 +09:00
Gilles Gouaillardet
7af5238595 f08: misc Makefile fixes 2015-07-27 16:19:44 +09:00
Mike Dubman
551d3428be Merge pull request #748 from yosefe/topic/ikrit-dc-defaults-master 
ikrit: set DC defaults.
 2015-07-26 19:52:41 +03:00
George Bosilca
c03b3b135c Don't allow multiple pvar with the same pvar_index. 
Fix Cisco copyright.
 2015-07-25 15:57:50 -04:00
Guillaume Papauré
98b6d65385 avoid use of non initialized variable 2015-07-25 15:29:32 -04:00
George Bosilca
e239de581b Create a new topology framework using the TreeMatch library developped 
at Inria Bordeaux. This allows us to take advantage of the remap
capability of MPI to rearrange the ranks beased on the weights
povided by the application.

Fix the indentation and protect with __DEBUG__ one fprintf.

Add the Cecill-B license to the imported library.

Fix a compiler warning.

Restrict the TreeMatch dependencies.

The TreeMatch software is released under BSD3 (as indicated by their
copyright information @
https://gforge.inria.fr/scm/viewvc.php/COPYING?view=markup&root=treematch).

Update the README.
 2015-07-25 13:30:42 -04:00
bosilca
5b9f59bb43 Merge pull request #738 from rolfv/pr/fix-msg-and-spaces 
Fix arguments to error message, remove tabs and trailing spaces
 2015-07-25 11:38:54 -04:00
Jeff Squyres
3e6694f7ea sharedfp: whitespace cleanup 
No code changes.

Replace tabs with spaces and do other whitespace cleanup (via emacs).
 2015-07-25 05:46:37 -07:00
Jeff Squyres
868a84d4da sharedfp: have sm_data->mutex always point to the right mutex 
Even if the mutex is actually located in
sm_data->sm_offset_ptr->mutex, have sm_data->mutex point to it.  This
avoids a few #if blocks that are otherwise identical.
 2015-07-25 05:42:57 -07:00
Jeff Squyres
5e159feb5a get_library_version: always use "X.Y.Z" version number format 
Fix one last place where we would write only "X.Y" if Z was 0 (we now
always write all three X, Y, Z values, even if Z is zero).
 2015-07-25 08:01:36 -04:00
Nathaniel Graham
59c43f4669 Additional java bindings for the Comm class 
Added bindings for MPI_COMM_CREATE_GROUP and MPI_COMM_DUP_WITH_INFO.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-24 16:14:35 -06:00
Howard Pritchard
dd231870a2 Merge pull request #746 from nrgraham23/formatting_fixes 
Formatting fixes for Java files.
 2015-07-24 14:25:14 -06:00
yosefe
41f3b77e31 ikrit: set DC defaults. 2015-07-24 21:01:13 +03:00
Nathaniel Graham
f87c41e926 Fix a compile issue in MPI.java 
A conflict was not fully resolved in the previous merge.  This
fixes the issue that was created.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-24 11:54:52 -06:00
Howard Pritchard
13bfb2baab Merge pull request #744 from hppritcha/topic/help_lanl_admins 
lanl: help out lanl admins
 2015-07-24 11:48:17 -06:00
Nathaniel Graham
0d7a38552e Formatting fixes for Java files. 
Fixed tab indenting as well as some of the block comments
at the top of a few of the files.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-24 11:02:13 -06:00
Howard Pritchard
5f14273e32 Merge pull request #743 from nrgraham23/java_win_name_bindings 
Java bindings for window name get and set
 2015-07-24 10:53:14 -06:00
Edgar Gabriel
4f85e0d833 add the configure logic to check for sem_open and sem_init. 
Change the code to rely on HAVE_SEM_OPEN etc. instead of my internal macro.
 2015-07-24 10:23:43 -05:00
Edgar Gabriel
d1d23054c6 rename the sm_offset structure to mca_sharedfp_sm_offset to obey to the Open MPI naming convention 2015-07-24 10:10:41 -05:00
Edgar Gabriel
c91cb67787 fix a bug in the unnamed semaphore section that was introduced when I tried to unify the named and unnamed semaphore logic. 2015-07-24 10:05:07 -05:00
Howard Pritchard
1631ad7d63 Merge pull request #740 from nrgraham23/environment_java_bindings 
Java Environment Variable Bindings
 2015-07-24 09:04:50 -06:00
Howard Pritchard
5eccba17af lanl: help out lanl admins 
LANL admins want platform files and *.conf
files so oblige them.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-07-24 08:03:52 -07:00
Edgar Gabriel
57c301f25a remove an erroneous free statement. 2015-07-24 09:44:27 -05:00
Ralph Castain
93f7a51275 Update the orte/system/opal_hotel test 2015-07-24 07:34:59 -07:00
Howard Pritchard
e92c282f78 Merge pull request #741 from hppritcha/topic/failure_to_launch 
plm/alps: fix orted based launch failures.
 2015-07-23 21:13:23 -06:00