1
1
Граф коммитов

5816 Коммитов

Автор SHA1 Сообщение Дата
Joshua Ladd
69e3c6f289 Merge pull request #1321 from jladd-mlnx/topic/add-allgatherv-reduce
Adding entry points for Allgatherv, iAllgatherv, Reduce, and iReduce.
2016-01-25 20:46:52 -05:00
Nathan Hjelm
500e90422d Merge pull request #1320 from hjelmn/osc_rdma_fix
osc/rdma: fix hang when performing large unaligned gets
2016-01-25 09:36:13 -07:00
Nathan Hjelm
45da311473 osc/rdma: fix hang when performing large unaligned gets
This commit adds code to handle large unaligned gets. There are two
possible code paths for these transactions:

 1) The remote region and local region have the same alignment. In
 this case the get will be broken down into at most three get
 transactions: 1 transaction to get the unaligned start of the region
 (buffered), 1 transaction to get the aligned portion of the region,
 and 1 transaction to get the end of the region.

 2) The remote and local regions do not have the same alignment. This
 should be an uncommon case and is not optimized. In this case a
 buffer is allocated and registered locally to hold the aligned data
 from the remote region. There may be cases where this fails (low
 memory, can't register memory). Those conditions are unlikely and
 will be handled later.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-01-22 21:06:46 -07:00
Valentin Petrov
5e2a2c0755 BufFix for coll/hcoll: coll_request must be set to ACTIVE when alloced
If the state of the request is not set to OMPI_REQUEST_ACTIVE
       then MPI_Test would immediately signal such request completed
       while hcoll may still be working on it.

Signed-off-by: Joshua Ladd <jladd.mlnx@gmail.com>
2016-01-23 03:23:59 +02:00
Joshua Ladd
e398bf6f3a Adding entry points for Allgatherv, iAllgatherv, Reduce, and iReduce.
Signed-off-by: Joshua Ladd <jladd.mlnx@gmail.com>
2016-01-23 03:09:29 +02:00
Nathan Hjelm
49d2f44b97 osc/rdma: use correct endpoint for local state
If atomics are not globally visible (cpu and nic atomics do not mix)
then a btl endpoint must be used to access local ranks. To avoid
issues that are caused by having the same region registered with
multiple handles osc/rdma was updated to always use the handle for
rank 0. There was a bug in the update that caused osc/rdma to continue
using the local endpoint for accessing the state even though the
pointer/handle are not valid for that endpoint. This commit fixes the
bug.

Fixes open-mpi/ompi#1241.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-01-22 10:41:27 -07:00
Nathan Hjelm
6180386bea osc/rdma: disable put aggregation when using threads
Optimizing put aggregation in the presence of threads will require a
redesign of the code. For now just ensure that put aggregation is
turned off when MPI_THREAD_MULTIPLE is enabled.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-01-21 15:50:35 -07:00
Edgar Gabriel
b253d4e887 fix CID 1349739, CID 1349738, CID 1349736 and (probably) CID 1349740 (not entirely sure about the last one, since I don't understand why block[i] is a problem but max_len[i] allocated and treated exactly the same way 1 line later is not). 2016-01-21 08:32:23 -06:00
Edgar Gabriel
9b8d769e41 will rivist the addproc component later in spring, right now it is constantly in the way of doing my tests. 2016-01-20 15:05:51 -06:00
Edgar Gabriel
a9ca37059a improve the communicaton abstraction. This commit also allows all aggregators to work simultaniously, instead of the slightly staggered way of the previous version. 2016-01-17 09:48:49 -06:00
Edgar Gabriel
56e11bfc97 initialize the stripe_size variable as well. 2016-01-17 09:48:49 -06:00
Edgar Gabriel
26c57ef374 separate the size of the buffer used for the shuffle step and the size of the buffer used for a pwritev operation. 2016-01-17 09:48:49 -06:00
Edgar Gabriel
39d5c8c281 further bug fixes silencing a compiler warning and fixing a memory overrun 2016-01-17 09:48:49 -06:00
Edgar Gabriel
2bcae84e11 further debugging 2016-01-17 09:48:49 -06:00
Edgar Gabriel
2bdd6ba17a correctly free some buffers, and ensure that lustre_stripe_size and stripe_count are always read from the file system. 2016-01-17 09:48:49 -06:00
Edgar Gabriel
4bbb22bd0b add a new field to the ompio data structure (stripe_count) and set it correctly on pvfs2 and lustre. 2016-01-17 09:48:49 -06:00
Edgar Gabriel
d282e94b67 add the new dynamic_gen2 component, designed to coexist for now with the original dynamic component 2016-01-17 09:48:49 -06:00
Jeff Squyres
60ffe713b8 common syms: whitelist bison-generated common symbols
Bison generates some common symbols that we can't do anything about,
so whitelist them.
2016-01-16 03:53:14 -08:00
Joshua Ladd
18c5a21562 Fix typo in error handling flow. 2016-01-14 22:28:54 +02:00
Joshua Ladd
afa62d8ca1 Addressing reviewers' comments for https://github.com/open-mpi/ompi-release/pull/891 2016-01-14 19:22:27 +02:00
Tomislav Janjusic
3858bc8e62 Adding support for dynamic endpoint creation
Signed-off-by: Tomislav Janjusic <tomislavj@mngx-apl-01.mtl.labs.mlnx>
Signed-off-by: Tomislavj Janjusic <tomislavj@mellanox.com>
Signed-off-by: Joshua Ladd <jladd.mlnx@gmail.com>
2016-01-12 22:17:03 +02:00
Nathan Hjelm
dd4d49cbbb Merge pull request #1278 from ggouaillardet/poc/osc_pt2pt
osc/pt2pt: use two distinct "namespaces" for tags
2016-01-12 09:49:31 -07:00
Edgar Gabriel
0a1b735eed use the actual preadv and pwritev functions if available. That's what the fbtl interfaces have been designed for. 2016-01-07 08:29:17 -06:00
Edgar Gabriel
1b0b849994 remove the MCA parameter setting the number of hosts in PLFS, since the plfs_setxattr function used is causing linking problems with PLFS 2.5
remove unused variables.
2016-01-05 11:13:23 -06:00
Edgar Gabriel
7861a8c357 revise the logic in the fbtl plfs avoiding the memcpy operation 2016-01-05 10:04:46 -06:00
Edgar Gabriel
da309ac962 - use a unique pid for each process as requested by the API
- sync the file before closing it
- use plfs_access() instead of access() before closing the file
2016-01-05 10:04:12 -06:00
Gilles Gouaillardet
06ecdb6aa7 osc/pt2pt: use two distinct "namespaces" for tags 2016-01-05 16:57:37 +09:00
Gilles Gouaillardet
14fdf75944 fs/pvfs2: fix typo
Thanks Dave Love for reporting this issue.

Fixes #1272
2016-01-03 23:28:35 +09:00
Artem Polyakov
2abb2972ac Fix Mellanox copyrights with respect to the following PRs:
* https://github.com/open-mpi/ompi/pull/1184
* https://github.com/open-mpi/ompi/pull/1188
* https://github.com/open-mpi/ompi/pull/1197
* https://github.com/open-mpi/ompi/pull/1202
* https://github.com/open-mpi/ompi/pull/1210
* https://github.com/open-mpi/ompi/pull/1216
* https://github.com/open-mpi/ompi/pull/1236
* https://github.com/open-mpi/ompi/pull/1237
* https://github.com/open-mpi/ompi/pull/1248
* https://github.com/open-mpi/ompi/pull/1260
* https://github.com/open-mpi/ompi/pull/1264
2015-12-30 00:12:19 +06:00
Ralph Castain
810f2446b7 Add pmix120 component, update the error handling functions in the PMIx API.
Update the configure logic for the new pmix120 component

ckpt

Get the pmix120 component to work - still not really registering or handling notifications, but infrastructure now operates

Cleanup some of the symbol scopes, and provide a more comprehensive rename.h file. Will pretty it up later - let's see how this works

Cleanup the rename files to use the pretty macros
2015-12-28 23:15:44 +09:00
Gilles Gouaillardet
fec973efda configury: test portability
replace test ... -o ... with test ... || test ...
and test ... -a ... with test ... && test ...
2015-12-28 13:58:45 +09:00
Gilles Gouaillardet
ccc96ad204 fbtl/base: add missing #include "opal/util/output.h"
Thanks Marco Atzeri for contributing the original patch
2015-12-24 14:41:26 +09:00
Gilles Gouaillardet
cebde2a753 coll/tuned: add missing #include "opal/util/output.h"
Thanks Marco Atzeri for contributing the original patch
2015-12-24 14:41:17 +09:00
Gilles Gouaillardet
ad9693c604 pml/yalla: add missing #include <alloca.h> 2015-12-24 14:33:58 +09:00
Gilles Gouaillardet
b38c17dbcb pml/cm: add missing #include <alloca.h>
Thanks Paul Hargrove for reporting this issue
2015-12-24 14:33:58 +09:00
Gilles Gouaillardet
071ae39a44 osc/rdma: add missing #include <alloca.h> 2015-12-24 14:33:58 +09:00
Gilles Gouaillardet
77f199d1d7 coll/fca: add missing #include <alloca.h> 2015-12-24 14:33:58 +09:00
Todd Kordenbrock
8a3660138e mtl-portals4: initialize endpoint nid/pid when using logical mapping
When mtl-portals4 is configured for logical mapping, coll-portals4
must disqualify because it does not yet support logical mapping.
coll-portals4 looks for the endpoint pid to be zero which tells it
that mtl-portals4 is configured for logical mapping.  This commit
initializes the endpoint nid/pid to zero for logical mapping.
2015-12-22 11:20:18 -06:00
rhc54
aa17bdf6e8 Merge pull request #1239 from rhc54/topic/cleanup
Cleanup the warnings from the ompi layer when compiling optimized under Mac OSX
2015-12-21 07:23:31 -08:00
Edgar Gabriel
46c20a1246 correctly set all variables storing information on the file pointer position to zero when setting the file view 2015-12-21 09:41:39 +09:00
Ralph Castain
ac6289dca6 Cleanup the warnings from the ompi layer when compiling optimized under Mac OSX
Cleanup per George's comments
2015-12-17 17:39:15 -08:00
igor.ivanov@itseez.com
041a6a9f53 ompi/pml: Fix warnings in yalla component 2015-12-16 16:22:30 +02:00
igor.ivanov@itseez.com
38c253c74c ompi/mtl: Fix warnings in mxm component 2015-12-16 16:22:29 +02:00
igor.ivanov@itseez.com
0a9956927a ompi/coll: Fix warnings in fca components
warning: assignment from incompatible pointer type
2015-12-16 16:22:16 +02:00
igor.ivanov@itseez.com
8f45d83d46 ompi/coll: Fix warnings in hcoll component
warning: assignment from incompatible pointer type
2015-12-16 14:52:29 +02:00
Ralph Castain
3a56f0d34b Create the pmix external component. Fix a few places where opal/util/argv.h were required when building with an external pmix (go figure).
NOTE: Building with external pmix *requires* that you also build with external libevent and hwloc libraries. Detect this at configure and error out with large message if this requirement is violated.

Closes #1204  (replaces it)
Fixes #1064
2015-12-15 15:26:13 -08:00
Nathan Hjelm
0de9445fc7 osc/rdma: fix bugs when running more than one process per node
A previous commit updated the one-sided code to register the state
region only once. This created an issue when using the scratch lock
with fetching atomics. In this case on any rank that isn't local rank
0 the module->state_handle is NULL. This commit fixes the issue by
removing the scratch lock and using a fragment pointer instead.

Fixes open-mpi/ompi#1290

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-12-15 11:25:25 -07:00
Nathan Hjelm
b7ba301310 Merge pull request #1165 from hjelmn/add_procs_group
ompi/group: release ompi_proc_t's at group destruction
2015-12-14 13:53:42 -08:00
Nathan Hjelm
9d659465b7 Merge pull request #1210 from artpol84/icbarrier_fix
Fix NBC iBarrier for inter-communicators.
2015-12-14 13:52:38 -08:00
Nathan Hjelm
4b3dac5933 Merge pull request #1216 from artpol84/icgatherv_fix
Fix NBC iGatherv for inter-communicators.
2015-12-14 13:51:58 -08:00